Wall clock time and date at job start Mon Mar 30 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38257 * 120.00173 * 2 1 4 4 C 1.38219 * 120.00091 * 180.02562 * 3 2 1 5 5 C 1.38254 * 120.00020 * 359.94895 * 4 3 2 6 6 C 1.38217 * 119.99764 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.99670 * 180.02562 * 6 5 4 8 8 H 1.08996 * 110.30157 * 348.08164 * 7 6 5 9 9 S 1.83397 * 110.33819 * 225.79850 * 7 6 5 10 10 C 1.83993 * 95.85101 * 221.38025 * 9 7 6 11 11 C 1.55147 * 100.91007 * 35.35029 * 10 9 7 12 12 H 1.09003 * 109.45776 * 78.40100 * 11 10 9 13 13 C 1.50703 * 109.60665 * 198.63191 * 11 10 9 14 14 H 1.08001 * 120.00076 * 119.53342 * 13 11 10 15 15 C 1.37881 * 119.99840 * 299.54149 * 13 11 10 16 16 N 1.31510 * 120.00005 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99640 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47473 * 60.00012 * 17 15 13 19 19 H 1.48504 * 109.46567 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47327 * 299.99408 * 17 15 13 21 21 C 1.52946 * 108.96351 * 318.56200 * 11 10 9 22 22 H 1.08998 * 108.88958 * 269.30966 * 21 11 10 23 23 N 1.46900 * 108.88930 * 150.89001 * 21 11 10 24 24 C 1.38214 * 120.00203 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47139 * 89.99969 * 1 2 3 26 26 H 1.09000 * 109.47402 * 210.00658 * 1 2 3 27 27 H 1.08999 * 109.47023 * 330.00100 * 1 2 3 28 28 H 1.08003 * 120.00156 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.00059 * 179.97438 * 4 3 2 30 30 H 1.07994 * 120.00188 * 179.72843 * 5 4 3 31 31 H 1.09003 * 111.12956 * 277.43746 * 10 9 7 32 32 H 1.08994 * 111.13340 * 153.26424 * 10 9 7 33 33 H 0.96999 * 120.00276 * 180.02562 * 16 15 13 34 34 H 1.00894 * 110.99882 * 183.35106 * 23 21 11 35 35 H 1.00891 * 111.00324 * 307.31086 * 23 21 11 36 36 H 1.08000 * 119.99576 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 0.0000 6 6 3.5806 -1.1970 0.0005 7 6 4.3341 -2.5021 0.0017 8 1 5.3895 -2.3297 -0.2091 9 16 3.6150 -3.6544 -1.2306 10 6 3.7219 -5.1540 -0.1699 11 6 3.4299 -4.5466 1.2276 12 1 2.3578 -4.3823 1.3352 13 6 3.9065 -5.4925 2.2997 14 1 4.6622 -5.1750 3.0029 15 6 3.3779 -6.7632 2.3826 16 7 2.4574 -7.1497 1.5265 17 14 3.9691 -7.9358 3.7110 18 1 3.6989 -7.3470 5.0472 19 1 3.2496 -9.2289 3.5858 20 1 5.4283 -8.1638 3.5564 21 6 4.1686 -3.2134 1.3542 22 1 5.1553 -3.3957 1.7800 23 7 3.4170 -2.3377 2.2632 24 6 2.1981 -1.1969 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6583 2.1327 -0.0004 29 1 4.1205 2.1326 -0.0010 30 1 5.3516 -0.0001 -0.0049 31 1 4.7195 -5.5917 -0.2076 32 1 2.9632 -5.8859 -0.4466 33 1 2.0852 -8.0435 1.5850 34 1 3.8481 -1.4278 2.3274 35 1 2.4526 -2.2615 1.9767 36 1 1.6580 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259631043.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:18 Heat of formation + Delta-G solvation = 15.653564 kcal Electronic energy + Delta-G solvation = -17813.412336 eV Core-core repulsion = 15194.763274 eV Total energy + Delta-G solvation = -2618.649062 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.64328 -36.68979 -33.46100 -32.49324 -30.96134 -29.92334 -27.40513 -26.59854 -25.29845 -23.00571 -21.81426 -20.77062 -18.91968 -16.87061 -16.39164 -15.74536 -15.21401 -14.80151 -14.45314 -14.42839 -13.97717 -13.81747 -13.40888 -13.05573 -12.83715 -12.31339 -12.29029 -11.97796 -11.80765 -11.18065 -11.02525 -10.99877 -10.82629 -10.67481 -10.56280 -10.43798 -9.87932 -9.42081 -8.85124 -8.61595 -8.45564 -8.41664 -7.92920 -6.96659 -6.11312 -4.14558 1.38894 1.52838 2.67246 3.25543 3.32823 3.34528 3.38782 3.91752 4.37906 4.80017 4.93456 4.98403 5.16764 5.25835 5.37155 5.43101 5.57774 5.58558 5.63673 5.68250 5.80111 5.90666 6.15893 6.20622 6.28548 6.51724 6.56701 6.61077 6.64157 6.72785 6.81091 7.14479 7.27394 7.54893 7.86171 7.90595 8.09659 8.24143 8.86415 9.49353 10.97031 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.028659 B = 0.005776 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.764459 B = 4846.613103 C = 4925.192095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.127 4.127 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.055 4.055 7 C -0.035 4.035 8 H 0.089 0.911 9 S -0.358 6.358 10 C -0.022 4.022 11 C 0.058 3.942 12 H 0.044 0.956 13 C -0.500 4.500 14 H 0.061 0.939 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.101 3.899 22 H 0.081 0.919 23 N -0.825 5.825 24 C -0.098 4.098 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.263 0.737 34 H 0.326 0.674 35 H 0.337 0.663 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.189 13.341 -3.141 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.137 4.137 5 C -0.142 4.142 6 C -0.057 4.057 7 C -0.166 4.166 8 H 0.107 0.893 9 S -0.129 6.129 10 C -0.170 4.170 11 C 0.038 3.962 12 H 0.062 0.938 13 C -0.539 4.539 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.012 4.012 22 H 0.100 0.900 23 N -0.355 5.355 24 C -0.117 4.117 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.073 0.927 34 H 0.139 0.861 35 H 0.152 0.848 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.537 12.755 -3.773 13.312 hybrid contribution 0.710 -0.270 0.804 1.106 sum 0.174 12.485 -2.969 12.834 Atomic orbital electron populations 1.20785 0.91266 1.02776 1.02238 1.19908 0.96082 0.92954 0.99736 1.20973 0.94213 0.97309 1.02034 1.21001 0.94255 0.97549 1.00874 1.20980 0.99661 0.91818 1.01729 1.19546 0.93870 0.93394 0.98884 1.23631 1.00061 0.93625 0.99290 0.89293 1.87488 1.84012 1.11878 1.29478 1.24827 1.04570 0.93017 0.94609 1.19463 0.96778 0.88476 0.91496 0.93755 1.20992 1.22767 0.96871 1.13304 0.92046 1.24986 0.94752 0.98247 0.96050 1.69882 1.27524 1.19420 1.36218 0.86558 0.78789 0.79857 0.82251 1.20150 1.21344 1.20260 1.22287 0.99395 0.93486 0.86028 0.90049 1.58936 1.06139 1.15999 1.54425 1.21155 0.93567 0.98208 0.98755 0.91321 0.91175 0.91818 0.86510 0.86355 0.86359 0.91043 0.86721 0.92696 0.86134 0.84768 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 36.00 0.36 -0.89 16 2 C -0.09 -1.16 5.88 -104.63 -0.62 -1.77 16 3 C -0.13 -1.53 9.70 -39.58 -0.38 -1.92 16 4 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 5 C -0.12 -1.66 9.56 -39.58 -0.38 -2.04 16 6 C -0.06 -0.87 3.26 -104.62 -0.34 -1.21 16 7 C -0.04 -0.63 3.52 -27.51 -0.10 -0.73 16 8 H 0.09 1.51 7.97 -51.93 -0.41 1.09 16 9 S -0.36 -7.22 21.59 -107.50 -2.32 -9.54 16 10 C -0.02 -0.51 6.18 38.29 0.24 -0.28 16 11 C 0.06 1.37 2.09 -90.66 -0.19 1.18 16 12 H 0.04 1.16 7.76 -51.93 -0.40 0.75 16 13 C -0.50 -13.07 8.44 -34.44 -0.29 -13.36 16 14 H 0.06 1.62 7.54 -52.49 -0.40 1.22 16 15 C 0.06 1.64 5.31 -17.82 -0.09 1.54 16 16 N -0.89 -24.43 11.78 55.43 0.65 -23.78 16 17 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.10 2.01 3.19 -67.37 -0.21 1.79 16 22 H 0.08 1.69 7.63 -51.93 -0.40 1.29 16 23 N -0.83 -15.24 8.59 -4.38 -0.04 -15.28 16 24 C -0.10 -1.53 6.63 -39.59 -0.26 -1.79 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 27 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.12 1.44 8.00 -52.49 -0.42 1.02 16 31 H 0.07 1.65 8.10 -51.93 -0.42 1.23 16 32 H 0.11 2.86 7.08 -51.93 -0.37 2.50 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.33 5.36 7.77 -39.30 -0.31 5.06 16 35 H 0.34 6.20 6.23 -39.30 -0.24 5.96 16 36 H 0.13 2.33 7.32 -52.49 -0.38 1.95 16 LS Contribution 300.76 15.07 4.53 4.53 Total: -1.00 -27.02 300.76 -9.86 -36.87 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -4.99 Total: 12.70 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -2.67 Total: -21.28 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.62 Total: -39.05 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -7.22 SS G_CDS: -2.32 Total: -9.54 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.02 -9.86 -36.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259631043.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.525 kcal (2) G-P(sol) polarization free energy of solvation -27.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds