Wall clock time and date at job start Mon Mar 30 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38257 * 120.00173 * 2 1 4 4 C 1.38219 * 120.00091 * 180.02562 * 3 2 1 5 5 C 1.38254 * 120.00020 * 359.94895 * 4 3 2 6 6 C 1.38217 * 119.99764 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.99670 * 180.02562 * 6 5 4 8 8 H 1.08996 * 110.30157 * 348.08164 * 7 6 5 9 9 S 1.83397 * 110.33819 * 225.79850 * 7 6 5 10 10 C 1.83993 * 95.85101 * 221.38025 * 9 7 6 11 11 C 1.55147 * 100.91007 * 35.35029 * 10 9 7 12 12 H 1.09003 * 109.45776 * 78.40100 * 11 10 9 13 13 C 1.50703 * 109.60665 * 198.63191 * 11 10 9 14 14 H 1.08001 * 120.00076 * 119.53342 * 13 11 10 15 15 C 1.37881 * 119.99840 * 299.54149 * 13 11 10 16 16 N 1.31510 * 120.00005 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99640 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47473 * 60.00012 * 17 15 13 19 19 H 1.48504 * 109.46567 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47327 * 299.99408 * 17 15 13 21 21 C 1.52946 * 108.96351 * 318.56200 * 11 10 9 22 22 H 1.08998 * 108.88958 * 269.30966 * 21 11 10 23 23 N 1.46900 * 108.88930 * 150.89001 * 21 11 10 24 24 C 1.38214 * 120.00203 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47139 * 89.99969 * 1 2 3 26 26 H 1.09000 * 109.47402 * 210.00658 * 1 2 3 27 27 H 1.08999 * 109.47023 * 330.00100 * 1 2 3 28 28 H 1.08003 * 120.00156 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.00059 * 179.97438 * 4 3 2 30 30 H 1.07994 * 120.00188 * 179.72843 * 5 4 3 31 31 H 1.09003 * 111.12956 * 277.43746 * 10 9 7 32 32 H 1.08994 * 111.13340 * 153.26424 * 10 9 7 33 33 H 0.96999 * 120.00276 * 180.02562 * 16 15 13 34 34 H 1.00894 * 110.99882 * 183.35106 * 23 21 11 35 35 H 1.00891 * 111.00324 * 307.31086 * 23 21 11 36 36 H 1.08000 * 119.99576 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 0.0000 6 6 3.5806 -1.1970 0.0005 7 6 4.3341 -2.5021 0.0017 8 1 5.3895 -2.3297 -0.2091 9 16 3.6150 -3.6544 -1.2306 10 6 3.7219 -5.1540 -0.1699 11 6 3.4299 -4.5466 1.2276 12 1 2.3578 -4.3823 1.3352 13 6 3.9065 -5.4925 2.2997 14 1 4.6622 -5.1750 3.0029 15 6 3.3779 -6.7632 2.3826 16 7 2.4574 -7.1497 1.5265 17 14 3.9691 -7.9358 3.7110 18 1 3.6989 -7.3470 5.0472 19 1 3.2496 -9.2289 3.5858 20 1 5.4283 -8.1638 3.5564 21 6 4.1686 -3.2134 1.3542 22 1 5.1553 -3.3957 1.7800 23 7 3.4170 -2.3377 2.2632 24 6 2.1981 -1.1969 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6583 2.1327 -0.0004 29 1 4.1205 2.1326 -0.0010 30 1 5.3516 -0.0001 -0.0049 31 1 4.7195 -5.5917 -0.2076 32 1 2.9632 -5.8859 -0.4466 33 1 2.0852 -8.0435 1.5850 34 1 3.8481 -1.4278 2.3274 35 1 2.4526 -2.2615 1.9767 36 1 1.6580 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259631043.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:18 Heat of formation + Delta-G solvation = 1.255304 kcal Electronic energy + Delta-G solvation = -17814.036691 eV Core-core repulsion = 15194.763274 eV Total energy + Delta-G solvation = -2619.273418 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.79061 -38.21932 -35.17354 -33.66896 -32.39189 -31.52582 -28.74738 -27.66887 -27.24807 -24.60662 -22.93425 -22.13036 -20.44515 -18.75339 -17.61623 -17.28611 -16.46235 -16.34814 -16.08581 -15.87584 -15.52158 -15.14602 -14.55247 -14.38116 -14.05343 -13.94414 -13.61029 -13.28020 -13.02790 -12.85620 -12.63650 -12.55397 -12.43085 -12.35590 -11.98724 -11.81966 -11.59795 -11.25224 -10.76910 -10.44720 -9.76324 -9.49293 -9.37660 -8.61168 -8.14757 -6.25259 0.26848 0.49419 1.17596 1.43176 1.43937 1.52136 1.57081 2.43162 2.85850 3.15118 3.54879 3.80037 3.91607 4.00848 4.09452 4.20386 4.29764 4.45947 4.53829 4.58892 4.69804 4.75583 4.78121 4.83964 4.90312 4.99692 5.16429 5.32021 5.38222 5.56745 5.60232 5.67172 5.73927 5.81774 6.12794 6.21640 6.35078 6.67903 6.80525 7.41885 8.92032 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.028659 B = 0.005776 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.764459 B = 4846.613103 C = 4925.192095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.121 4.121 4 C -0.112 4.112 5 C -0.124 4.124 6 C -0.075 4.075 7 C -0.021 4.021 8 H 0.103 0.897 9 S -0.356 6.356 10 C -0.020 4.020 11 C 0.063 3.937 12 H 0.011 0.989 13 C -0.515 4.515 14 H 0.056 0.944 15 C 0.016 3.984 16 N -0.918 5.918 17 Si 0.957 3.043 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.270 1.270 21 C 0.109 3.891 22 H 0.074 0.926 23 N -0.826 5.826 24 C -0.116 4.116 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.135 0.865 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.263 0.737 34 H 0.340 0.660 35 H 0.337 0.663 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.498 16.021 -2.846 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.139 4.139 4 C -0.130 4.130 5 C -0.144 4.144 6 C -0.077 4.077 7 C -0.152 4.152 8 H 0.121 0.879 9 S -0.127 6.127 10 C -0.168 4.168 11 C 0.042 3.958 12 H 0.029 0.971 13 C -0.555 4.555 14 H 0.075 0.925 15 C -0.183 4.183 16 N -0.557 5.557 17 Si 0.783 3.217 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.195 1.195 21 C -0.004 4.004 22 H 0.092 0.908 23 N -0.357 5.357 24 C -0.135 4.135 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.166 0.834 29 H 0.170 0.830 30 H 0.153 0.847 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.159 15.450 -3.479 15.838 hybrid contribution 0.454 -0.973 0.692 1.277 sum 0.613 14.477 -2.788 14.756 Atomic orbital electron populations 1.20829 0.89939 1.03420 1.02866 1.20165 0.97240 0.92682 0.99185 1.21375 0.94583 0.97834 1.00103 1.21399 0.94428 0.98184 0.98969 1.21199 1.00611 0.91437 1.01115 1.19405 0.93809 0.92970 1.01483 1.23613 1.01019 0.93914 0.96611 0.87893 1.87396 1.84699 1.10865 1.29694 1.24419 1.03027 0.93894 0.95459 1.19311 0.95041 0.90191 0.91237 0.97100 1.21286 1.22629 0.97646 1.13908 0.92537 1.25712 0.94898 0.99765 0.97938 1.70013 1.28491 1.19649 1.37564 0.85618 0.78571 0.77854 0.79665 1.19985 1.21120 1.19472 1.21956 0.98359 0.92391 0.87677 0.90776 1.58870 1.06163 1.16717 1.53987 1.21005 0.93710 0.98107 1.00687 0.90650 0.92243 0.89497 0.83405 0.83016 0.84737 0.91781 0.89457 0.92822 0.84539 0.84746 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 10.01 71.23 0.71 -1.60 16 2 C -0.09 -2.29 5.88 -19.87 -0.12 -2.40 16 3 C -0.12 -2.43 9.70 22.27 0.22 -2.22 16 4 C -0.11 -2.21 10.05 22.27 0.22 -1.98 16 5 C -0.12 -2.99 9.56 22.27 0.21 -2.78 16 6 C -0.07 -2.26 3.26 -19.86 -0.06 -2.33 16 7 C -0.02 -0.74 3.52 30.09 0.11 -0.64 16 8 H 0.10 3.34 7.97 -2.39 -0.02 3.32 16 9 S -0.36 -14.66 21.59 -56.49 -1.22 -15.88 16 10 C -0.02 -0.94 6.18 72.72 0.45 -0.49 16 11 C 0.06 3.07 2.09 -10.82 -0.02 3.05 16 12 H 0.01 0.60 7.76 -2.39 -0.02 0.58 16 13 C -0.52 -27.67 8.44 25.60 0.22 -27.46 16 14 H 0.06 3.02 7.54 -2.91 -0.02 3.00 16 15 C 0.02 0.89 5.31 84.66 0.45 1.34 16 16 N -0.92 -52.01 11.78 21.45 0.25 -51.76 16 17 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 C 0.11 4.40 3.19 45.14 0.14 4.55 16 22 H 0.07 3.09 7.63 -2.39 -0.02 3.07 16 23 N -0.83 -30.49 8.59 -167.76 -1.44 -31.93 16 24 C -0.12 -3.57 6.63 22.27 0.15 -3.43 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.32 8.09 -2.39 -0.02 1.30 16 27 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16 28 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 29 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 30 H 0.13 2.77 8.00 -2.91 -0.02 2.75 16 31 H 0.06 3.09 8.10 -2.39 -0.02 3.07 16 32 H 0.09 4.63 7.08 -2.39 -0.02 4.61 16 33 H 0.26 14.28 8.31 -92.71 -0.77 13.50 16 34 H 0.34 10.79 7.77 -89.70 -0.70 10.09 16 35 H 0.34 12.66 6.23 -89.70 -0.56 12.10 16 36 H 0.10 3.80 7.32 -2.91 -0.02 3.78 16 Total: -1.00 -59.52 300.76 2.12 -57.39 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: -0.17 Total: 33.34 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 2.67 Total: -36.39 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -1.19 Total: -83.69 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -14.66 SS G_CDS: -1.22 Total: -15.88 kcal Total: -59.52 2.12 -57.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259631043.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.648 kcal (2) G-P(sol) polarization free energy of solvation -59.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds