Wall clock time and date at job start Mon Mar 30 2020 07:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34175 * 125.44082 * 2 1 4 4 C 1.47017 * 105.95977 * 180.02562 * 3 2 1 5 5 C 1.47373 * 127.19760 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00570 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99774 * 0.02562 * 5 4 3 8 8 C 1.47024 * 125.64800 * 359.95706 * 7 5 4 9 9 C 1.54370 * 107.29114 * 181.12636 * 8 7 5 10 10 C 1.55159 * 102.91659 * 22.14427 * 9 8 7 11 11 H 1.09000 * 111.00989 * 82.63630 * 10 9 8 12 12 C 1.50708 * 111.00335 * 206.45168 * 10 9 8 13 13 H 1.07991 * 119.99789 * 356.82317 * 12 10 9 14 14 C 1.37877 * 120.00008 * 176.81628 * 12 10 9 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99938 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 C 1.47424 * 125.65006 * 180.02562 * 7 5 4 21 21 C 1.36419 * 105.61222 * 0.22900 * 4 3 2 22 22 C 1.50702 * 125.80243 * 179.75629 * 21 4 3 23 23 O 1.33658 * 108.39725 * 359.62768 * 21 4 3 24 24 H 1.09000 * 109.47178 * 90.00374 * 1 2 3 25 25 H 1.09007 * 109.47125 * 209.99788 * 1 2 3 26 26 H 1.08997 * 109.47153 * 329.99755 * 1 2 3 27 27 H 1.07997 * 127.01502 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.88362 * 300.51376 * 8 7 5 29 29 H 1.09004 * 109.87937 * 61.52523 * 8 7 5 30 30 H 1.08992 * 110.70789 * 263.79954 * 9 8 7 31 31 H 1.08995 * 110.75615 * 140.50720 * 9 8 7 32 32 H 0.96997 * 119.99848 * 180.02562 * 15 14 12 33 33 H 1.08997 * 110.36741 * 36.99173 * 20 7 5 34 34 H 1.09005 * 110.45682 * 274.71999 * 20 7 5 35 35 H 1.08997 * 109.47365 * 89.99572 * 22 21 4 36 36 H 1.08996 * 109.47062 * 209.99920 * 22 21 4 37 37 H 1.09004 * 109.46907 * 329.99494 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9025 1.4124 -0.0014 6 8 5.9892 0.8665 -0.0023 7 7 4.8244 2.7579 -0.0011 8 6 3.5820 3.5441 -0.0008 9 6 3.9822 5.0347 -0.0294 10 6 5.4189 4.9969 -0.6141 11 1 5.3966 4.9408 -1.7024 12 6 6.2209 6.1869 -0.1538 13 1 5.7567 6.9476 0.4563 14 6 7.5473 6.3044 -0.5113 15 7 8.2474 7.3426 -0.1092 16 14 8.3501 4.9889 -1.5670 17 1 8.9361 3.9415 -0.6923 18 1 9.4223 5.6019 -2.3916 19 1 7.3302 4.3773 -2.4564 20 6 5.9705 3.6852 -0.0023 21 6 3.5790 -0.7582 -0.0062 22 6 4.7390 -1.7203 -0.0142 23 8 2.2852 -1.0935 -0.0006 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.9595 2.1229 0.0004 28 1 2.9904 3.3027 -0.8840 29 1 3.0074 3.3290 0.9002 30 1 3.9865 5.4520 0.9774 31 1 3.3159 5.6012 -0.6800 32 1 9.1804 7.4254 -0.3611 33 1 6.7780 3.2894 -0.6181 34 1 6.3207 3.8593 1.0152 35 1 5.0221 -1.9566 1.0115 36 1 4.4488 -2.6350 -0.5310 37 1 5.5851 -1.2649 -0.5289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259683427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:15 Heat of formation + Delta-G solvation = -20.535207 kcal Electronic energy + Delta-G solvation = -19953.110482 eV Core-core repulsion = 16890.139286 eV Total energy + Delta-G solvation = -3062.971196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.60993 -39.34030 -36.92325 -33.49434 -32.92653 -32.70913 -30.95495 -29.51640 -28.70595 -25.78144 -24.68386 -23.26734 -21.84015 -20.96394 -19.69866 -18.16843 -17.00540 -16.90964 -16.51179 -15.84112 -15.45158 -14.93248 -14.19212 -13.84037 -13.64626 -13.50617 -13.40440 -13.08046 -12.93520 -12.74429 -12.71712 -12.52224 -12.26395 -12.03372 -11.59123 -11.40706 -10.93350 -10.55567 -10.34347 -9.88292 -9.72075 -9.66320 -9.51240 -9.19891 -8.63680 -8.47905 -8.03795 -6.16255 -4.18212 1.42457 2.02265 2.67106 3.29345 3.34952 3.41298 3.50871 3.62841 4.36244 4.40360 4.76406 4.84981 5.05750 5.13670 5.19783 5.21475 5.30875 5.38058 5.47571 5.51219 5.53898 5.61997 5.70791 5.86366 6.01344 6.14343 6.15730 6.32872 6.43260 6.54167 6.66384 6.73996 6.87112 7.06225 7.31720 7.62505 8.02398 8.41058 8.57163 8.86747 9.45114 10.96070 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030061 B = 0.005486 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.201541 B = 5102.477902 C = 5854.422866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.023 4.023 3 C -0.191 4.191 4 C -0.230 4.230 5 C 0.594 3.406 6 O -0.553 6.553 7 N -0.604 5.604 8 C 0.098 3.902 9 C -0.118 4.118 10 C 0.007 3.993 11 H 0.042 0.958 12 C -0.513 4.513 13 H 0.080 0.920 14 C 0.077 3.923 15 N -0.894 5.894 16 Si 0.871 3.129 17 H -0.272 1.272 18 H -0.289 1.289 19 H -0.264 1.264 20 C 0.097 3.903 21 C 0.067 3.933 22 C -0.079 4.079 23 O -0.178 6.178 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.166 0.834 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.266 0.734 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.996 -14.662 -0.162 20.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.210 4.210 4 C -0.234 4.234 5 C 0.384 3.616 6 O -0.434 6.434 7 N -0.336 5.336 8 C -0.025 4.025 9 C -0.156 4.156 10 C -0.012 4.012 11 H 0.060 0.940 12 C -0.550 4.550 13 H 0.098 0.902 14 C -0.126 4.126 15 N -0.531 5.531 16 Si 0.699 3.301 17 H -0.198 1.198 18 H -0.215 1.215 19 H -0.189 1.189 20 C -0.025 4.025 21 C 0.015 3.985 22 C -0.135 4.135 23 O -0.075 6.075 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.184 0.816 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.353 -15.196 -0.159 20.903 hybrid contribution 0.557 -0.406 -0.505 0.854 sum -13.796 -15.602 -0.664 20.837 Atomic orbital electron populations 1.20300 0.84818 1.04055 1.03526 1.22249 0.93917 0.83803 1.07176 1.23159 0.90878 1.00050 1.06890 1.21207 0.94038 0.93165 1.15010 1.16879 0.87219 0.80730 0.76819 1.90720 1.28994 1.71179 1.52530 1.48508 1.09583 1.04339 1.71188 1.22385 0.86844 0.93144 1.00154 1.22621 0.98638 0.92156 1.02218 1.20381 0.92189 0.92388 0.96266 0.93978 1.20844 0.95164 1.05279 1.33757 0.90226 1.24994 0.97220 0.95233 0.95183 1.69878 1.09094 1.28908 1.45251 0.87050 0.79613 0.82039 0.81444 1.19783 1.21550 1.18916 1.23196 0.87968 0.89525 1.01767 1.22722 0.82763 0.94051 0.98993 1.20578 0.92242 0.96415 1.04261 1.83660 1.16194 1.35679 1.71951 0.90121 0.90636 0.89200 0.81648 0.91939 0.91948 0.90725 0.91024 0.92397 0.92239 0.90965 0.89522 0.90697 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.40 36.01 0.37 -0.13 16 2 C -0.02 -0.27 7.28 -35.74 -0.26 -0.53 16 3 C -0.19 -2.56 9.30 -37.46 -0.35 -2.90 16 4 C -0.23 -3.79 6.24 -103.28 -0.64 -4.44 16 5 C 0.59 11.85 7.84 -12.54 -0.10 11.75 16 6 O -0.55 -12.40 15.10 5.27 0.08 -12.32 16 7 N -0.60 -12.05 3.33 -171.78 -0.57 -12.63 16 8 C 0.10 1.57 5.00 -3.04 -0.02 1.56 16 9 C -0.12 -2.13 6.40 -24.87 -0.16 -2.29 16 10 C 0.01 0.17 2.40 -89.63 -0.21 -0.05 16 11 H 0.04 0.99 7.20 -51.93 -0.37 0.61 16 12 C -0.51 -13.84 9.10 -34.44 -0.31 -14.16 16 13 H 0.08 2.29 8.02 -52.49 -0.42 1.87 16 14 C 0.08 2.17 5.46 -17.82 -0.10 2.08 16 15 N -0.89 -26.81 13.96 55.43 0.77 -26.03 16 16 Si 0.87 21.93 24.66 -169.99 -4.19 17.74 16 17 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.26 -6.49 6.50 56.52 0.37 -6.13 16 20 C 0.10 2.21 5.30 -2.54 -0.01 2.19 16 21 C 0.07 0.98 7.37 -34.96 -0.26 0.73 16 22 C -0.08 -0.96 9.89 36.01 0.36 -0.60 16 23 O -0.18 -2.37 10.52 7.64 0.08 -2.29 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.17 1.91 4.87 -52.49 -0.26 1.66 16 28 H 0.06 0.89 6.86 -51.93 -0.36 0.53 16 29 H 0.06 0.87 7.01 -51.93 -0.36 0.51 16 30 H 0.07 1.35 8.03 -51.93 -0.42 0.93 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.06 1.46 5.18 -51.93 -0.27 1.19 16 34 H 0.07 1.71 8.03 -51.93 -0.42 1.29 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.11 1.54 6.49 -51.93 -0.34 1.20 16 LS Contribution 299.14 15.07 4.51 4.51 Total: -1.00 -32.64 299.14 -5.93 -38.57 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.92 Total: -0.76 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -1.69 Total: -6.79 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.20 Total: -38.66 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.16 Total: -14.61 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.19 Total: 17.74 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.64 -5.93 -38.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.039 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds