Wall clock time and date at job start Mon Mar 30 2020 07:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34175 * 125.44082 * 2 1 4 4 C 1.47017 * 105.95977 * 180.02562 * 3 2 1 5 5 C 1.47373 * 127.19760 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00570 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99774 * 0.02562 * 5 4 3 8 8 C 1.47024 * 125.64800 * 359.95706 * 7 5 4 9 9 C 1.54370 * 107.29114 * 181.12636 * 8 7 5 10 10 C 1.55159 * 102.91659 * 22.14427 * 9 8 7 11 11 H 1.09000 * 111.00989 * 82.63630 * 10 9 8 12 12 C 1.50708 * 111.00335 * 206.45168 * 10 9 8 13 13 H 1.07991 * 119.99789 * 356.82317 * 12 10 9 14 14 C 1.37877 * 120.00008 * 176.81628 * 12 10 9 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99938 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 C 1.47424 * 125.65006 * 180.02562 * 7 5 4 21 21 C 1.36419 * 105.61222 * 0.22900 * 4 3 2 22 22 C 1.50702 * 125.80243 * 179.75629 * 21 4 3 23 23 O 1.33658 * 108.39725 * 359.62768 * 21 4 3 24 24 H 1.09000 * 109.47178 * 90.00374 * 1 2 3 25 25 H 1.09007 * 109.47125 * 209.99788 * 1 2 3 26 26 H 1.08997 * 109.47153 * 329.99755 * 1 2 3 27 27 H 1.07997 * 127.01502 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.88362 * 300.51376 * 8 7 5 29 29 H 1.09004 * 109.87937 * 61.52523 * 8 7 5 30 30 H 1.08992 * 110.70789 * 263.79954 * 9 8 7 31 31 H 1.08995 * 110.75615 * 140.50720 * 9 8 7 32 32 H 0.96997 * 119.99848 * 180.02562 * 15 14 12 33 33 H 1.08997 * 110.36741 * 36.99173 * 20 7 5 34 34 H 1.09005 * 110.45682 * 274.71999 * 20 7 5 35 35 H 1.08997 * 109.47365 * 89.99572 * 22 21 4 36 36 H 1.08996 * 109.47062 * 209.99920 * 22 21 4 37 37 H 1.09004 * 109.46907 * 329.99494 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9025 1.4124 -0.0014 6 8 5.9892 0.8665 -0.0023 7 7 4.8244 2.7579 -0.0011 8 6 3.5820 3.5441 -0.0008 9 6 3.9822 5.0347 -0.0294 10 6 5.4189 4.9969 -0.6141 11 1 5.3966 4.9408 -1.7024 12 6 6.2209 6.1869 -0.1538 13 1 5.7567 6.9476 0.4563 14 6 7.5473 6.3044 -0.5113 15 7 8.2474 7.3426 -0.1092 16 14 8.3501 4.9889 -1.5670 17 1 8.9361 3.9415 -0.6923 18 1 9.4223 5.6019 -2.3916 19 1 7.3302 4.3773 -2.4564 20 6 5.9705 3.6852 -0.0023 21 6 3.5790 -0.7582 -0.0062 22 6 4.7390 -1.7203 -0.0142 23 8 2.2852 -1.0935 -0.0006 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.9595 2.1229 0.0004 28 1 2.9904 3.3027 -0.8840 29 1 3.0074 3.3290 0.9002 30 1 3.9865 5.4520 0.9774 31 1 3.3159 5.6012 -0.6800 32 1 9.1804 7.4254 -0.3611 33 1 6.7780 3.2894 -0.6181 34 1 6.3207 3.8593 1.0152 35 1 5.0221 -1.9566 1.0115 36 1 4.4488 -2.6350 -0.5310 37 1 5.5851 -1.2649 -0.5289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259683427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:15 Heat of formation + Delta-G solvation = -42.222926 kcal Electronic energy + Delta-G solvation = -19954.050933 eV Core-core repulsion = 16890.139286 eV Total energy + Delta-G solvation = -3063.911646 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.63737 -40.87862 -38.53141 -35.11766 -34.20548 -33.86559 -32.63538 -30.51239 -30.19211 -27.32188 -26.03589 -24.61467 -23.14064 -22.20805 -21.44620 -19.45555 -18.97779 -18.28634 -17.56623 -17.04668 -16.96267 -16.36318 -16.16775 -15.31501 -14.89256 -14.66537 -14.56669 -14.34070 -14.22656 -14.09041 -13.79488 -13.62950 -13.45924 -13.29322 -13.05538 -12.88993 -12.49243 -12.38774 -12.11344 -11.62274 -11.44536 -11.23847 -11.08005 -10.81930 -10.80658 -9.76083 -9.31182 -8.37474 -6.40935 0.25949 1.03045 1.25341 1.30817 1.36163 1.68457 2.03397 2.22904 2.24554 2.97831 3.46013 3.58676 3.81788 3.83651 4.07775 4.23323 4.27808 4.36687 4.40940 4.52116 4.56259 4.62960 4.63089 4.67473 4.77907 4.88272 4.92762 5.04451 5.06895 5.19690 5.22242 5.27524 5.45604 5.49548 5.62134 6.04368 6.24177 6.52988 6.68226 7.05145 7.25329 8.78579 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030061 B = 0.005486 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.201541 B = 5102.477902 C = 5854.422866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.012 4.012 3 C -0.204 4.204 4 C -0.262 4.262 5 C 0.587 3.413 6 O -0.591 6.591 7 N -0.611 5.611 8 C 0.101 3.899 9 C -0.111 4.111 10 C 0.002 3.998 11 H 0.040 0.960 12 C -0.507 4.507 13 H 0.054 0.946 14 C 0.029 3.971 15 N -0.938 5.938 16 Si 0.923 3.077 17 H -0.280 1.280 18 H -0.283 1.283 19 H -0.254 1.254 20 C 0.103 3.897 21 C 0.069 3.931 22 C -0.079 4.079 23 O -0.177 6.177 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.185 0.815 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.268 0.732 33 H 0.037 0.963 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.192 -16.404 -0.701 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.060 4.060 3 C -0.223 4.223 4 C -0.267 4.267 5 C 0.379 3.621 6 O -0.475 6.475 7 N -0.342 5.342 8 C -0.020 4.020 9 C -0.148 4.148 10 C -0.018 4.018 11 H 0.059 0.941 12 C -0.546 4.546 13 H 0.072 0.928 14 C -0.170 4.170 15 N -0.578 5.578 16 Si 0.749 3.251 17 H -0.207 1.207 18 H -0.209 1.209 19 H -0.179 1.179 20 C -0.020 4.020 21 C 0.015 3.985 22 C -0.135 4.135 23 O -0.074 6.074 24 H 0.116 0.884 25 H 0.106 0.894 26 H 0.129 0.871 27 H 0.202 0.798 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.599 -16.939 -0.705 24.437 hybrid contribution 1.463 0.112 -0.284 1.494 sum -16.136 -16.827 -0.989 23.334 Atomic orbital electron populations 1.20564 0.81251 1.05728 1.05105 1.23114 0.95652 0.82755 1.04461 1.23318 0.89284 1.01515 1.08145 1.21083 0.93967 0.93806 1.17813 1.17429 0.88080 0.80704 0.75851 1.90689 1.30751 1.71843 1.54173 1.48547 1.09796 1.04471 1.71404 1.22595 0.85659 0.90887 1.02903 1.22592 0.95808 0.94240 1.02183 1.20297 0.94857 0.90490 0.96161 0.94145 1.21130 0.95299 1.05925 1.32205 0.92822 1.25646 0.98068 0.96750 0.96530 1.69983 1.09594 1.30862 1.47320 0.86206 0.79057 0.79642 0.80159 1.20673 1.20943 1.17867 1.22789 0.88719 0.90317 1.00141 1.23025 0.83762 0.93901 0.97791 1.20606 0.90894 0.96997 1.04967 1.83706 1.15671 1.36402 1.71618 0.88424 0.89377 0.87134 0.79831 0.89156 0.89111 0.91131 0.88317 0.92283 0.94448 0.92824 0.88545 0.87751 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.40 71.24 0.74 0.08 16 2 C -0.01 -0.23 7.28 24.76 0.18 -0.05 16 3 C -0.20 -4.77 9.30 23.65 0.22 -4.55 16 4 C -0.26 -8.22 6.24 -18.99 -0.12 -8.34 16 5 C 0.59 23.23 7.84 86.65 0.68 23.91 16 6 O -0.59 -27.04 15.10 -4.06 -0.06 -27.11 16 7 N -0.61 -23.77 3.33 -815.65 -2.71 -26.49 16 8 C 0.10 2.94 5.00 86.74 0.43 3.38 16 9 C -0.11 -3.74 6.40 31.80 0.20 -3.53 16 10 C 0.00 0.07 2.40 -10.15 -0.02 0.05 16 11 H 0.04 1.85 7.20 -2.39 -0.02 1.84 16 12 C -0.51 -27.86 9.10 25.60 0.23 -27.62 16 13 H 0.05 3.16 8.02 -2.92 -0.02 3.14 16 14 C 0.03 1.68 5.46 84.65 0.46 2.14 16 15 N -0.94 -57.74 13.96 21.45 0.30 -57.44 16 16 Si 0.92 46.30 24.66 68.60 1.69 47.99 16 17 H -0.28 -14.34 7.11 99.48 0.71 -13.63 16 18 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 19 H -0.25 -12.22 6.50 99.48 0.65 -11.57 16 20 C 0.10 4.74 5.30 86.85 0.46 5.20 16 21 C 0.07 1.88 7.37 25.26 0.19 2.07 16 22 C -0.08 -1.82 9.89 71.24 0.70 -1.12 16 23 O -0.18 -4.19 10.52 4.41 0.05 -4.14 16 24 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.18 3.42 4.87 -2.91 -0.01 3.40 16 28 H 0.09 2.19 6.86 -2.39 -0.02 2.17 16 29 H 0.09 2.19 7.01 -2.38 -0.02 2.17 16 30 H 0.07 2.44 8.03 -2.39 -0.02 2.42 16 31 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.04 1.87 5.18 -2.39 -0.01 1.85 16 34 H 0.05 2.62 8.03 -2.38 -0.02 2.60 16 35 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.09 2.44 6.49 -2.38 -0.02 2.43 16 Total: -1.00 -73.32 299.14 4.64 -68.68 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.02 Total: 6.90 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 4.36 Total: -8.40 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -2.41 Total: -83.92 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.01 Total: -31.25 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.69 Total: 47.99 kcal Total: -73.32 4.64 -68.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.454 kcal (2) G-P(sol) polarization free energy of solvation -73.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds