Wall clock time and date at job start Mon Mar 30 2020 07:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34178 * 125.43982 * 2 1 4 4 C 1.47016 * 105.95244 * 180.14610 * 3 2 1 5 5 C 1.47385 * 127.19280 * 179.83026 * 4 3 2 6 6 O 1.21609 * 119.99978 * 179.68571 * 5 4 3 7 7 N 1.34780 * 119.99606 * 359.68809 * 5 4 3 8 8 C 1.47024 * 125.64847 * 359.68776 * 7 5 4 9 9 C 1.54327 * 107.26774 * 179.20685 * 8 7 5 10 10 C 1.55155 * 102.94571 * 337.80617 * 9 8 7 11 11 H 1.09005 * 111.03913 * 277.41873 * 10 9 8 12 12 C 1.50695 * 111.00698 * 153.57332 * 10 9 8 13 13 H 1.08007 * 119.99678 * 6.35538 * 12 10 9 14 14 C 1.37878 * 120.00238 * 186.35131 * 12 10 9 15 15 N 1.31508 * 119.99866 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99894 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47139 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47004 * 119.99806 * 16 14 12 19 19 H 1.48497 * 109.47163 * 239.99841 * 16 14 12 20 20 C 1.47426 * 125.64645 * 179.97438 * 7 5 4 21 21 C 1.36421 * 105.61729 * 359.57349 * 4 3 2 22 22 C 1.50701 * 125.79992 * 180.26501 * 21 4 3 23 23 O 1.33651 * 108.39530 * 0.25994 * 21 4 3 24 24 H 1.09004 * 109.47273 * 180.36146 * 1 2 3 25 25 H 1.09005 * 109.47057 * 300.36142 * 1 2 3 26 26 H 1.08997 * 109.47213 * 60.35920 * 1 2 3 27 27 H 1.08000 * 127.01885 * 359.97438 * 3 2 1 28 28 H 1.08995 * 109.88316 * 298.62177 * 8 7 5 29 29 H 1.09002 * 109.88101 * 59.79072 * 8 7 5 30 30 H 1.08999 * 110.71564 * 219.44370 * 9 8 7 31 31 H 1.09000 * 110.86856 * 96.24526 * 9 8 7 32 32 H 0.97005 * 120.00309 * 180.02562 * 15 14 12 33 33 H 1.09002 * 110.36518 * 322.69812 * 20 7 5 34 34 H 1.08997 * 110.36787 * 85.02191 * 20 7 5 35 35 H 1.08991 * 109.47180 * 89.99959 * 22 21 4 36 36 H 1.09003 * 109.46542 * 209.99858 * 22 21 4 37 37 H 1.09005 * 109.46869 * 329.99200 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6027 -0.0036 5 6 4.9025 1.4123 -0.0084 6 8 5.9891 0.8663 -0.0053 7 7 4.8244 2.7578 -0.0163 8 6 3.5820 3.5439 -0.0274 9 6 3.9827 5.0342 -0.0131 10 6 5.4176 5.0027 0.5763 11 1 5.3925 4.9572 1.6651 12 6 6.2208 6.1880 0.1064 13 1 5.7454 6.9682 -0.4698 14 6 7.5623 6.2766 0.4119 15 7 8.1412 5.3264 1.1130 16 14 8.5577 7.7463 -0.1701 17 1 7.6790 8.6681 -0.9338 18 1 9.1205 8.4594 1.0046 19 1 9.6648 7.2800 -1.0431 20 6 5.9706 3.6850 -0.0213 21 6 3.5789 -0.7583 0.0044 22 6 4.7389 -1.7203 0.0100 23 8 2.2851 -1.0936 0.0064 24 1 -0.3634 -1.0277 0.0065 25 1 -0.3633 0.5195 0.8868 26 1 -0.3633 0.5082 -0.8932 27 1 1.9595 2.1230 -0.0004 28 1 3.0110 3.3222 -0.9289 29 1 2.9882 3.3112 0.8566 30 1 3.3143 5.6070 0.6297 31 1 3.9894 5.4442 -1.0230 32 1 9.0850 5.3888 1.3283 33 1 6.7765 3.2953 0.6005 34 1 6.3216 3.8487 -1.0401 35 1 5.0185 -1.9462 1.0390 36 1 4.4504 -2.6403 -0.4984 37 1 5.5867 -1.2702 -0.5065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259683430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:17 Heat of formation + Delta-G solvation = -26.500430 kcal Electronic energy + Delta-G solvation = -19844.774947 eV Core-core repulsion = 16781.545079 eV Total energy + Delta-G solvation = -3063.229868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.48607 -39.05884 -36.65242 -33.39977 -32.83435 -32.63711 -30.60915 -29.38818 -28.05858 -25.64856 -24.67819 -23.19951 -21.60723 -20.88132 -19.55544 -17.96889 -16.79464 -16.54220 -16.33951 -15.67418 -15.10351 -14.70479 -14.43462 -13.68271 -13.54951 -13.43567 -13.22703 -12.95595 -12.64420 -12.58536 -12.42608 -12.36279 -11.78753 -11.70613 -11.48089 -11.24733 -10.97170 -10.57361 -10.48344 -9.89188 -9.56283 -9.39023 -9.27108 -9.00497 -8.52846 -8.33338 -7.76081 -6.09308 -4.14996 1.56377 2.14820 2.79069 3.27480 3.36064 3.38910 3.75091 3.83804 4.38864 4.51714 4.89231 5.02526 5.13585 5.24087 5.28850 5.33689 5.47496 5.50781 5.59398 5.64140 5.67749 5.75115 5.89195 6.00000 6.25501 6.28828 6.45380 6.48373 6.74474 6.88040 7.00153 7.08753 7.19091 7.49931 7.68582 7.90489 8.28436 8.31989 8.81689 8.88888 9.51071 10.99999 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.034169 B = 0.004776 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.263331 B = 5860.738691 C = 6561.445455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.026 4.026 3 C -0.191 4.191 4 C -0.226 4.226 5 C 0.591 3.409 6 O -0.552 6.552 7 N -0.605 5.605 8 C 0.100 3.900 9 C -0.131 4.131 10 C 0.046 3.954 11 H 0.038 0.962 12 C -0.519 4.519 13 H 0.062 0.938 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.121 3.879 21 C 0.063 3.937 22 C -0.078 4.078 23 O -0.179 6.179 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.165 0.835 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.263 0.737 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.029 -9.898 -2.086 17.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 C -0.210 4.210 4 C -0.231 4.231 5 C 0.380 3.620 6 O -0.434 6.434 7 N -0.337 5.337 8 C -0.024 4.024 9 C -0.169 4.169 10 C 0.027 3.973 11 H 0.056 0.944 12 C -0.557 4.557 13 H 0.080 0.920 14 C -0.139 4.139 15 N -0.522 5.522 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C 0.000 4.000 21 C 0.010 3.990 22 C -0.134 4.134 23 O -0.076 6.076 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.182 0.818 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.388 -10.575 -2.006 17.178 hybrid contribution 0.555 1.001 -0.265 1.175 sum -12.833 -9.574 -2.271 16.171 Atomic orbital electron populations 1.20286 0.84946 1.03799 1.03612 1.22222 0.93859 0.83874 1.07483 1.23150 0.91025 1.00001 1.06825 1.21319 0.94185 0.93182 1.14393 1.16836 0.87041 0.80900 0.77184 1.90715 1.28914 1.71147 1.52579 1.48675 1.09998 1.04424 1.70624 1.22287 0.87208 0.93269 0.99590 1.22777 1.00248 0.92201 1.01711 1.19843 0.89066 0.92385 0.96041 0.94391 1.21013 0.94051 1.05445 1.35176 0.91975 1.25047 0.97968 0.96235 0.94654 1.69954 1.11769 1.32658 1.37833 0.86489 0.80128 0.82588 0.78543 1.19692 1.20953 1.20924 1.22721 0.87543 0.88920 1.00785 1.22715 0.82682 0.94136 0.99430 1.20565 0.92294 0.96282 1.04232 1.83653 1.16264 1.35659 1.72033 0.90738 0.89690 0.89718 0.81754 0.92548 0.92287 0.91720 0.91425 0.92691 0.89706 0.92841 0.89597 0.90867 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.40 36.01 0.37 -0.17 16 2 C -0.03 -0.33 7.28 -35.74 -0.26 -0.59 16 3 C -0.19 -2.76 9.30 -37.46 -0.35 -3.11 16 4 C -0.23 -3.99 6.25 -103.27 -0.64 -4.64 16 5 C 0.59 12.60 7.84 -12.54 -0.10 12.50 16 6 O -0.55 -13.17 15.10 5.27 0.08 -13.09 16 7 N -0.61 -12.96 3.33 -171.81 -0.57 -13.53 16 8 C 0.10 1.74 5.00 -3.06 -0.02 1.73 16 9 C -0.13 -2.52 6.39 -24.90 -0.16 -2.68 16 10 C 0.05 1.12 2.96 -89.64 -0.27 0.85 16 11 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 12 C -0.52 -13.76 8.55 -34.44 -0.29 -14.05 16 13 H 0.06 1.61 7.79 -52.48 -0.41 1.20 16 14 C 0.06 1.74 5.34 -17.82 -0.10 1.65 16 15 N -0.88 -25.34 12.06 55.43 0.67 -24.67 16 16 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.12 2.99 5.65 -2.54 -0.01 2.98 16 21 C 0.06 0.98 7.37 -34.96 -0.26 0.72 16 22 C -0.08 -1.02 9.89 36.01 0.36 -0.66 16 23 O -0.18 -2.54 10.52 7.65 0.08 -2.46 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.17 2.10 4.87 -52.49 -0.26 1.84 16 28 H 0.06 0.87 7.05 -51.93 -0.37 0.50 16 29 H 0.06 0.93 6.83 -51.93 -0.35 0.58 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.08 2.38 7.33 -51.93 -0.38 2.00 16 34 H 0.05 1.38 8.03 -51.93 -0.42 0.97 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.11 1.65 6.49 -51.93 -0.34 1.31 16 LS Contribution 305.82 15.07 4.61 4.61 Total: -1.00 -31.43 305.82 -6.91 -38.33 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.03 Total: 0.40 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.72 Total: -5.47 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.10 Total: -38.20 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.16 Total: -15.55 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.43 -6.91 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.834 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds