Wall clock time and date at job start Mon Mar 30 2020 07:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34178 * 125.43982 * 2 1 4 4 C 1.47016 * 105.95244 * 180.14610 * 3 2 1 5 5 C 1.47385 * 127.19280 * 179.83026 * 4 3 2 6 6 O 1.21609 * 119.99978 * 179.68571 * 5 4 3 7 7 N 1.34780 * 119.99606 * 359.68809 * 5 4 3 8 8 C 1.47024 * 125.64847 * 359.68776 * 7 5 4 9 9 C 1.54327 * 107.26774 * 179.20685 * 8 7 5 10 10 C 1.55155 * 102.94571 * 337.80617 * 9 8 7 11 11 H 1.09005 * 111.03913 * 277.41873 * 10 9 8 12 12 C 1.50695 * 111.00698 * 153.57332 * 10 9 8 13 13 H 1.08007 * 119.99678 * 6.35538 * 12 10 9 14 14 C 1.37878 * 120.00238 * 186.35131 * 12 10 9 15 15 N 1.31508 * 119.99866 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99894 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47139 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47004 * 119.99806 * 16 14 12 19 19 H 1.48497 * 109.47163 * 239.99841 * 16 14 12 20 20 C 1.47426 * 125.64645 * 179.97438 * 7 5 4 21 21 C 1.36421 * 105.61729 * 359.57349 * 4 3 2 22 22 C 1.50701 * 125.79992 * 180.26501 * 21 4 3 23 23 O 1.33651 * 108.39530 * 0.25994 * 21 4 3 24 24 H 1.09004 * 109.47273 * 180.36146 * 1 2 3 25 25 H 1.09005 * 109.47057 * 300.36142 * 1 2 3 26 26 H 1.08997 * 109.47213 * 60.35920 * 1 2 3 27 27 H 1.08000 * 127.01885 * 359.97438 * 3 2 1 28 28 H 1.08995 * 109.88316 * 298.62177 * 8 7 5 29 29 H 1.09002 * 109.88101 * 59.79072 * 8 7 5 30 30 H 1.08999 * 110.71564 * 219.44370 * 9 8 7 31 31 H 1.09000 * 110.86856 * 96.24526 * 9 8 7 32 32 H 0.97005 * 120.00309 * 180.02562 * 15 14 12 33 33 H 1.09002 * 110.36518 * 322.69812 * 20 7 5 34 34 H 1.08997 * 110.36787 * 85.02191 * 20 7 5 35 35 H 1.08991 * 109.47180 * 89.99959 * 22 21 4 36 36 H 1.09003 * 109.46542 * 209.99858 * 22 21 4 37 37 H 1.09005 * 109.46869 * 329.99200 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6027 -0.0036 5 6 4.9025 1.4123 -0.0084 6 8 5.9891 0.8663 -0.0053 7 7 4.8244 2.7578 -0.0163 8 6 3.5820 3.5439 -0.0274 9 6 3.9827 5.0342 -0.0131 10 6 5.4176 5.0027 0.5763 11 1 5.3925 4.9572 1.6651 12 6 6.2208 6.1880 0.1064 13 1 5.7454 6.9682 -0.4698 14 6 7.5623 6.2766 0.4119 15 7 8.1412 5.3264 1.1130 16 14 8.5577 7.7463 -0.1701 17 1 7.6790 8.6681 -0.9338 18 1 9.1205 8.4594 1.0046 19 1 9.6648 7.2800 -1.0431 20 6 5.9706 3.6850 -0.0213 21 6 3.5789 -0.7583 0.0044 22 6 4.7389 -1.7203 0.0100 23 8 2.2851 -1.0936 0.0064 24 1 -0.3634 -1.0277 0.0065 25 1 -0.3633 0.5195 0.8868 26 1 -0.3633 0.5082 -0.8932 27 1 1.9595 2.1230 -0.0004 28 1 3.0110 3.3222 -0.9289 29 1 2.9882 3.3112 0.8566 30 1 3.3143 5.6070 0.6297 31 1 3.9894 5.4442 -1.0230 32 1 9.0850 5.3888 1.3283 33 1 6.7765 3.2953 0.6005 34 1 6.3216 3.8487 -1.0401 35 1 5.0185 -1.9462 1.0390 36 1 4.4504 -2.6403 -0.4984 37 1 5.5867 -1.2702 -0.5065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259683430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:17 Heat of formation + Delta-G solvation = -45.987147 kcal Electronic energy + Delta-G solvation = -19845.619954 eV Core-core repulsion = 16781.545079 eV Total energy + Delta-G solvation = -3064.074875 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.61393 -40.72955 -38.38531 -35.09771 -34.12570 -33.84068 -32.32541 -30.39969 -29.76196 -27.31872 -26.08923 -24.61669 -23.01405 -22.25085 -21.35281 -19.33455 -18.60080 -18.11001 -17.52343 -16.91414 -16.84921 -16.34874 -16.22684 -15.23817 -14.67827 -14.51748 -14.23610 -14.20294 -14.15565 -13.99186 -13.54650 -13.49476 -13.44021 -13.23378 -13.03401 -12.83673 -12.49267 -12.46710 -12.19078 -11.61546 -11.15176 -11.09375 -10.95018 -10.78295 -10.60186 -9.65581 -9.26845 -8.17688 -6.30612 0.29929 1.04973 1.41693 1.43768 1.55488 1.71724 2.15570 2.29735 2.42766 3.15197 3.50741 3.65906 3.85289 3.94462 4.24270 4.26986 4.37021 4.41719 4.55435 4.57805 4.61323 4.67686 4.71179 4.79893 4.93752 4.98212 5.05249 5.13710 5.18936 5.21786 5.33599 5.45700 5.53207 5.66890 5.84707 6.06418 6.24756 6.66261 6.82068 7.16130 7.39851 8.91401 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.034169 B = 0.004776 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.263331 B = 5860.738691 C = 6561.445455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.011 4.011 3 C -0.206 4.206 4 C -0.261 4.261 5 C 0.582 3.418 6 O -0.593 6.593 7 N -0.613 5.613 8 C 0.102 3.898 9 C -0.119 4.119 10 C 0.037 3.963 11 H 0.009 0.991 12 C -0.529 4.529 13 H 0.070 0.930 14 C 0.010 3.990 15 N -0.923 5.923 16 Si 0.962 3.038 17 H -0.258 1.258 18 H -0.281 1.281 19 H -0.286 1.286 20 C 0.137 3.863 21 C 0.065 3.935 22 C -0.077 4.077 23 O -0.176 6.176 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.182 0.818 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.261 0.739 33 H 0.038 0.962 34 H 0.033 0.967 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.257 -9.811 -2.786 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.060 4.060 3 C -0.225 4.225 4 C -0.265 4.265 5 C 0.374 3.626 6 O -0.477 6.477 7 N -0.344 5.344 8 C -0.019 4.019 9 C -0.157 4.157 10 C 0.018 3.982 11 H 0.027 0.973 12 C -0.567 4.567 13 H 0.088 0.912 14 C -0.190 4.190 15 N -0.562 5.562 16 Si 0.787 3.213 17 H -0.181 1.181 18 H -0.207 1.207 19 H -0.212 1.212 20 C 0.015 3.985 21 C 0.012 3.988 22 C -0.133 4.133 23 O -0.073 6.073 24 H 0.106 0.894 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.199 0.801 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.672 -10.477 -2.711 19.877 hybrid contribution 1.505 0.900 -0.032 1.754 sum -15.167 -9.576 -2.743 18.146 Atomic orbital electron populations 1.20563 0.81110 1.05365 1.05506 1.23123 0.95684 0.82707 1.04438 1.23283 0.89363 1.01502 1.08333 1.21149 0.94019 0.93888 1.17440 1.17468 0.88037 0.80927 0.76131 1.90678 1.30865 1.71878 1.54311 1.48712 1.10270 1.04605 1.70848 1.22505 0.85845 0.91397 1.02196 1.22709 0.96964 0.93979 1.02061 1.19767 0.92595 0.91426 0.94428 0.97306 1.21429 0.94508 1.06147 1.34655 0.91164 1.25916 0.99351 0.98882 0.94819 1.70119 1.11871 1.34725 1.39436 0.85444 0.78479 0.79354 0.78039 1.18141 1.20661 1.21187 1.22193 0.87866 0.90090 0.98398 1.23007 0.83768 0.93886 0.98113 1.20590 0.90892 0.96989 1.04864 1.83704 1.15630 1.36340 1.71644 0.89386 0.87760 0.87639 0.80065 0.89456 0.89957 0.89036 0.90849 0.92971 0.94296 0.94908 0.88745 0.87600 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.40 71.24 0.74 -0.02 16 2 C -0.01 -0.25 7.28 24.76 0.18 -0.07 16 3 C -0.21 -5.41 9.30 23.65 0.22 -5.19 16 4 C -0.26 -9.04 6.25 -18.99 -0.12 -9.16 16 5 C 0.58 25.62 7.84 86.65 0.68 26.30 16 6 O -0.59 -30.01 15.10 -4.06 -0.06 -30.07 16 7 N -0.61 -26.77 3.33 -815.73 -2.71 -29.48 16 8 C 0.10 3.38 5.00 86.73 0.43 3.81 16 9 C -0.12 -4.37 6.39 31.78 0.20 -4.17 16 10 C 0.04 1.85 2.96 -10.16 -0.03 1.82 16 11 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 12 C -0.53 -28.41 8.55 25.60 0.22 -28.19 16 13 H 0.07 3.57 7.79 -2.91 -0.02 3.55 16 14 C 0.01 0.54 5.34 84.66 0.45 0.99 16 15 N -0.92 -55.21 12.06 21.45 0.26 -54.95 16 16 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 17 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 20 C 0.14 7.13 5.65 86.85 0.49 7.62 16 21 C 0.07 1.98 7.37 25.26 0.19 2.16 16 22 C -0.08 -2.00 9.89 71.24 0.70 -1.29 16 23 O -0.18 -4.55 10.52 4.45 0.05 -4.51 16 24 H 0.09 0.77 8.14 -2.38 -0.02 0.76 16 25 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.18 3.95 4.87 -2.91 -0.01 3.94 16 28 H 0.09 2.40 7.05 -2.39 -0.02 2.38 16 29 H 0.08 2.37 6.83 -2.39 -0.02 2.35 16 30 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.07 2.61 8.03 -2.39 -0.02 2.59 16 32 H 0.26 14.95 8.31 -92.70 -0.77 14.17 16 33 H 0.04 2.35 7.33 -2.39 -0.02 2.33 16 34 H 0.03 1.79 8.03 -2.39 -0.02 1.77 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.08 2.67 6.49 -2.38 -0.02 2.65 16 Total: -1.00 -72.56 305.82 4.99 -67.57 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.07 Total: 11.36 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 4.36 Total: -5.39 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -2.45 Total: -84.43 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.01 Total: -34.58 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -72.56 4.99 -67.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.578 kcal (2) G-P(sol) polarization free energy of solvation -72.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds