Wall clock time and date at job start Mon Mar 30 2020 06:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36938 * 120.00330 * 2 1 4 4 H 1.07993 * 120.00510 * 203.11158 * 3 2 1 5 5 C 1.38819 * 119.99480 * 23.10265 * 3 2 1 6 6 N 1.31619 * 120.00154 * 12.97049 * 5 3 2 7 7 Si 1.86800 * 119.99981 * 192.96359 * 5 3 2 8 8 H 1.48507 * 109.46893 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.46956 * 120.00431 * 7 5 3 10 10 H 1.48495 * 109.47083 * 240.00552 * 7 5 3 11 11 C 1.46501 * 120.00151 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.09265 * 179.09558 * 11 2 1 13 13 C 1.52323 * 109.09611 * 298.12182 * 11 2 1 14 14 S 1.79998 * 113.53202 * 188.99355 * 13 11 2 15 15 C 1.81827 * 103.67540 * 295.84102 * 14 13 11 16 16 C 1.51379 * 107.74006 * 82.54570 * 15 14 13 17 17 C 1.38517 * 119.14167 * 109.46522 * 16 15 14 18 18 C 1.38278 * 119.56891 * 181.14250 * 17 16 15 19 19 C 1.38268 * 119.87870 * 0.16994 * 18 17 16 20 20 C 1.38175 * 120.11633 * 359.39696 * 19 18 17 21 21 C 1.36364 * 120.14442 * 289.63583 * 16 15 14 22 22 C 1.51609 * 121.79815 * 356.40083 * 21 16 15 23 23 H 1.09008 * 109.46533 * 275.12358 * 1 2 3 24 24 H 1.09000 * 109.47489 * 35.12228 * 1 2 3 25 25 H 1.09002 * 109.47168 * 155.13051 * 1 2 3 26 26 H 0.96996 * 119.99862 * 179.97438 * 6 5 3 27 27 H 1.08996 * 108.68033 * 310.03836 * 13 11 2 28 28 H 1.08995 * 108.67612 * 67.97109 * 13 11 2 29 29 H 1.09001 * 109.81814 * 322.96389 * 15 14 13 30 30 H 1.09004 * 109.81543 * 202.12673 * 15 14 13 31 31 H 1.08000 * 120.21754 * 1.11904 * 17 16 15 32 32 H 1.07999 * 120.06736 * 180.14396 * 18 17 16 33 33 H 1.07996 * 119.94434 * 179.42156 * 19 18 17 34 34 H 1.07999 * 120.12558 * 179.97438 * 20 19 18 35 35 H 1.08999 * 109.38577 * 200.09736 * 22 21 16 36 36 H 1.09002 * 109.38223 * 319.88039 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1646 1.2234 -0.3671 5 6 1.5391 2.3398 0.4717 6 7 0.4131 2.2591 1.1486 7 14 2.3154 4.0074 0.1461 8 1 3.5680 3.8269 -0.6311 9 1 1.3699 4.8508 -0.6284 10 1 2.6253 4.6699 1.4384 11 6 2.1975 -1.2687 -0.0006 12 1 3.2677 -1.0625 -0.0167 13 6 1.8591 -2.0401 1.2686 14 16 2.8843 -3.4983 1.5181 15 6 2.4579 -4.5694 0.1121 16 6 3.2714 -4.1117 -1.0797 17 6 4.3007 -4.9149 -1.5424 18 6 5.0647 -4.4945 -2.6155 19 6 4.7990 -3.2774 -3.2154 20 6 3.7643 -2.4874 -2.7522 21 6 2.9916 -2.9214 -1.6834 22 6 1.8236 -2.0592 -1.2465 23 1 -0.3633 0.0918 1.0237 24 1 -0.3634 0.8405 -0.5912 25 1 -0.3633 -0.9324 -0.4322 26 1 -0.0133 3.0654 1.4785 27 1 1.9828 -1.3761 2.1241 28 1 0.8158 -2.3517 1.2199 29 1 1.3945 -4.4812 -0.1105 30 1 2.7008 -5.6052 0.3496 31 1 4.5055 -5.8632 -1.0678 32 1 5.8677 -5.1154 -2.9843 33 1 5.4010 -2.9437 -4.0476 34 1 3.5569 -1.5364 -3.2203 35 1 1.5638 -1.3685 -2.0487 36 1 0.9668 -2.6957 -1.0255 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259741176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:33 Heat of formation + Delta-G solvation = 44.016613 kcal Electronic energy + Delta-G solvation = -17888.482808 eV Core-core repulsion = 15271.063660 eV Total energy + Delta-G solvation = -2617.419148 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.55483 -36.66536 -33.50491 -32.33679 -31.11605 -29.17196 -27.38088 -26.05991 -25.82187 -23.38662 -21.96838 -20.82942 -19.14612 -17.05051 -16.39060 -15.95777 -15.46095 -15.04920 -14.72575 -14.13251 -13.72449 -13.48502 -13.12773 -13.10338 -12.83609 -12.74168 -12.14597 -11.83395 -11.67104 -11.14764 -11.14514 -10.86638 -10.69535 -10.58877 -10.48648 -10.24664 -10.04595 -9.91376 -9.62165 -8.68988 -8.54563 -8.37527 -7.38318 -6.77516 -5.78477 -3.24897 1.38394 1.57163 2.23944 2.96178 3.35358 3.42896 3.44985 4.01029 4.45604 4.73886 4.93073 5.07480 5.15540 5.24594 5.34056 5.40137 5.55301 5.57539 5.63826 5.74313 5.81615 6.01638 6.08417 6.11181 6.26700 6.30751 6.60552 6.64102 6.67803 6.73911 6.86160 6.94844 7.19866 7.29819 7.65806 7.77080 8.33096 9.16898 9.78744 10.27572 11.25805 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.023687 B = 0.006375 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.799712 B = 4390.922972 C = 5062.746908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.589 5.589 3 C -0.256 4.256 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.905 5.905 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.186 3.814 12 H 0.074 0.926 13 C -0.091 4.091 14 S -0.268 6.268 15 C -0.044 4.044 16 C -0.076 4.076 17 C -0.110 4.110 18 C -0.129 4.129 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.060 4.060 22 C -0.099 4.099 23 H 0.032 0.968 24 H 0.042 0.958 25 H -0.002 1.002 26 H 0.253 0.747 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.292 -13.387 -5.786 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.311 5.311 3 C -0.386 4.386 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.076 3.924 12 H 0.092 0.908 13 C -0.241 4.241 14 S -0.038 6.038 15 C -0.191 4.191 16 C -0.078 4.078 17 C -0.130 4.130 18 C -0.147 4.147 19 C -0.142 4.142 20 C -0.129 4.129 21 C -0.062 4.062 22 C -0.138 4.138 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.017 0.983 26 H 0.063 0.937 27 H 0.125 0.875 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.102 0.898 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.838 -13.410 -4.802 15.043 hybrid contribution -0.565 1.244 -0.945 1.661 sum 4.273 -12.166 -5.747 14.118 Atomic orbital electron populations 1.20805 0.82616 0.95522 0.99597 1.44148 1.01809 0.99990 1.85168 1.19300 0.98632 0.85136 1.35512 0.91163 1.25054 0.97855 0.98635 0.97911 1.70070 1.19386 1.27263 1.38276 0.86176 0.78637 0.84142 0.77569 1.20209 1.21568 1.21657 1.20153 0.97266 0.86004 0.88995 0.90792 1.24177 0.99842 0.95009 1.05095 1.86441 1.62703 1.19464 1.35149 1.22512 1.01887 1.00883 0.93843 1.19299 0.97535 0.94907 0.96082 1.20983 0.95522 0.99375 0.97145 1.21032 0.99914 0.96829 0.96939 1.21091 0.97971 0.94919 1.00202 1.21309 0.95515 0.99578 0.96491 1.19671 0.97224 0.94097 0.95205 1.21414 0.94235 0.97477 1.00683 0.95003 0.93882 0.98300 0.93703 0.87499 0.91141 0.89039 0.87704 0.86297 0.86487 0.86473 0.85787 0.89774 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.78 8.17 59.84 0.49 4.27 16 2 N -0.59 -14.25 2.69 -174.34 -0.47 -14.72 16 3 C -0.26 -6.89 9.58 -15.06 -0.14 -7.03 16 4 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 5 C 0.00 0.12 5.10 -17.43 -0.09 0.03 16 6 N -0.91 -25.91 10.71 55.49 0.59 -25.32 16 7 Si 0.90 21.64 29.57 -169.99 -5.03 16.61 16 8 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 C 0.19 3.77 2.36 -68.68 -0.16 3.61 16 12 H 0.07 1.63 7.53 -51.93 -0.39 1.24 16 13 C -0.09 -1.72 5.05 36.81 0.19 -1.53 16 14 S -0.27 -4.42 21.78 -107.50 -2.34 -6.76 16 15 C -0.04 -0.59 5.87 36.34 0.21 -0.38 16 16 C -0.08 -1.09 5.10 -104.86 -0.53 -1.63 16 17 C -0.11 -1.40 9.68 -39.46 -0.38 -1.78 16 18 C -0.13 -1.55 10.06 -39.56 -0.40 -1.95 16 19 C -0.12 -1.58 10.04 -39.59 -0.40 -1.97 16 20 C -0.11 -1.64 9.63 -39.38 -0.38 -2.02 16 21 C -0.06 -0.94 4.92 -104.63 -0.52 -1.46 16 22 C -0.10 -1.71 3.93 -27.84 -0.11 -1.82 16 23 H 0.03 0.82 7.34 -51.92 -0.38 0.44 16 24 H 0.04 1.10 7.35 -51.93 -0.38 0.72 16 25 H 0.00 -0.03 7.15 -51.93 -0.37 -0.40 16 26 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.11 2.28 8.14 -51.68 -0.42 1.86 16 28 H 0.07 1.29 7.74 -51.67 -0.40 0.89 16 29 H 0.09 1.19 7.10 -51.93 -0.37 0.83 16 30 H 0.10 1.17 7.90 -51.93 -0.41 0.76 16 31 H 0.12 1.24 7.95 -52.49 -0.42 0.82 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.12 1.79 7.98 -52.49 -0.42 1.37 16 35 H 0.08 1.54 7.77 -51.93 -0.40 1.14 16 36 H 0.06 0.97 6.45 -51.93 -0.34 0.64 16 LS Contribution 298.19 15.07 4.49 4.49 Total: -1.00 -28.59 298.19 -10.06 -38.65 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.09 Total: 0.73 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -2.22 Total: -13.68 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.13 Total: -40.04 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Atomic # 16 Polarization: -4.42 SS G_CDS: -2.34 Total: -6.76 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.59 -10.06 -38.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259741176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.664 kcal (2) G-P(sol) polarization free energy of solvation -28.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds