Wall clock time and date at job start Mon Mar 30 2020 06:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36938 * 120.00330 * 2 1 4 4 H 1.07993 * 120.00510 * 203.11158 * 3 2 1 5 5 C 1.38819 * 119.99480 * 23.10265 * 3 2 1 6 6 N 1.31619 * 120.00154 * 12.97049 * 5 3 2 7 7 Si 1.86800 * 119.99981 * 192.96359 * 5 3 2 8 8 H 1.48507 * 109.46893 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.46956 * 120.00431 * 7 5 3 10 10 H 1.48495 * 109.47083 * 240.00552 * 7 5 3 11 11 C 1.46501 * 120.00151 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.09265 * 179.09558 * 11 2 1 13 13 C 1.52323 * 109.09611 * 298.12182 * 11 2 1 14 14 S 1.79998 * 113.53202 * 188.99355 * 13 11 2 15 15 C 1.81827 * 103.67540 * 295.84102 * 14 13 11 16 16 C 1.51379 * 107.74006 * 82.54570 * 15 14 13 17 17 C 1.38517 * 119.14167 * 109.46522 * 16 15 14 18 18 C 1.38278 * 119.56891 * 181.14250 * 17 16 15 19 19 C 1.38268 * 119.87870 * 0.16994 * 18 17 16 20 20 C 1.38175 * 120.11633 * 359.39696 * 19 18 17 21 21 C 1.36364 * 120.14442 * 289.63583 * 16 15 14 22 22 C 1.51609 * 121.79815 * 356.40083 * 21 16 15 23 23 H 1.09008 * 109.46533 * 275.12358 * 1 2 3 24 24 H 1.09000 * 109.47489 * 35.12228 * 1 2 3 25 25 H 1.09002 * 109.47168 * 155.13051 * 1 2 3 26 26 H 0.96996 * 119.99862 * 179.97438 * 6 5 3 27 27 H 1.08996 * 108.68033 * 310.03836 * 13 11 2 28 28 H 1.08995 * 108.67612 * 67.97109 * 13 11 2 29 29 H 1.09001 * 109.81814 * 322.96389 * 15 14 13 30 30 H 1.09004 * 109.81543 * 202.12673 * 15 14 13 31 31 H 1.08000 * 120.21754 * 1.11904 * 17 16 15 32 32 H 1.07999 * 120.06736 * 180.14396 * 18 17 16 33 33 H 1.07996 * 119.94434 * 179.42156 * 19 18 17 34 34 H 1.07999 * 120.12558 * 179.97438 * 20 19 18 35 35 H 1.08999 * 109.38577 * 200.09736 * 22 21 16 36 36 H 1.09002 * 109.38223 * 319.88039 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1646 1.2234 -0.3671 5 6 1.5391 2.3398 0.4717 6 7 0.4131 2.2591 1.1486 7 14 2.3154 4.0074 0.1461 8 1 3.5680 3.8269 -0.6311 9 1 1.3699 4.8508 -0.6284 10 1 2.6253 4.6699 1.4384 11 6 2.1975 -1.2687 -0.0006 12 1 3.2677 -1.0625 -0.0167 13 6 1.8591 -2.0401 1.2686 14 16 2.8843 -3.4983 1.5181 15 6 2.4579 -4.5694 0.1121 16 6 3.2714 -4.1117 -1.0797 17 6 4.3007 -4.9149 -1.5424 18 6 5.0647 -4.4945 -2.6155 19 6 4.7990 -3.2774 -3.2154 20 6 3.7643 -2.4874 -2.7522 21 6 2.9916 -2.9214 -1.6834 22 6 1.8236 -2.0592 -1.2465 23 1 -0.3633 0.0918 1.0237 24 1 -0.3634 0.8405 -0.5912 25 1 -0.3633 -0.9324 -0.4322 26 1 -0.0133 3.0654 1.4785 27 1 1.9828 -1.3761 2.1241 28 1 0.8158 -2.3517 1.2199 29 1 1.3945 -4.4812 -0.1105 30 1 2.7008 -5.6052 0.3496 31 1 4.5055 -5.8632 -1.0678 32 1 5.8677 -5.1154 -2.9843 33 1 5.4010 -2.9437 -4.0476 34 1 3.5569 -1.5364 -3.2203 35 1 1.5638 -1.3685 -2.0487 36 1 0.9668 -2.6957 -1.0255 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259741176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:33 Heat of formation + Delta-G solvation = 30.204958 kcal Electronic energy + Delta-G solvation = -17889.081726 eV Core-core repulsion = 15271.063660 eV Total energy + Delta-G solvation = -2618.018066 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.68291 -38.34220 -35.10154 -33.60340 -32.58333 -30.87507 -28.53476 -28.07046 -27.07491 -25.20052 -23.08698 -22.12017 -20.68812 -18.97212 -17.54443 -17.46669 -16.75781 -16.62947 -15.93838 -15.63166 -15.43807 -14.93679 -14.71385 -14.42193 -14.13098 -13.93995 -13.61614 -13.26977 -13.11215 -12.96526 -12.77470 -12.50539 -12.24157 -12.21247 -12.06346 -11.86812 -11.75080 -11.54188 -11.07923 -10.71666 -9.63704 -9.53395 -8.97037 -8.50396 -7.86784 -5.35859 0.28465 0.52131 0.95632 1.43448 1.45048 1.55299 1.66437 2.48130 2.95554 3.27198 3.54746 3.67853 3.80177 3.95528 4.05869 4.13459 4.22863 4.34716 4.44773 4.51282 4.57124 4.66295 4.71403 4.80146 4.85371 5.07456 5.18865 5.20195 5.21690 5.34697 5.59791 5.61871 5.66841 5.66955 5.80050 6.17123 6.28584 7.10604 7.80384 8.24224 9.15587 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.023687 B = 0.006375 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.799712 B = 4390.922972 C = 5062.746908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.605 5.605 3 C -0.264 4.264 4 H 0.066 0.934 5 C -0.048 4.048 6 N -0.935 5.935 7 Si 0.966 3.034 8 H -0.268 1.268 9 H -0.288 1.288 10 H -0.292 1.292 11 C 0.192 3.808 12 H 0.050 0.950 13 C -0.084 4.084 14 S -0.270 6.270 15 C -0.035 4.035 16 C -0.087 4.087 17 C -0.109 4.109 18 C -0.124 4.124 19 C -0.123 4.123 20 C -0.131 4.131 21 C -0.082 4.082 22 C -0.085 4.085 23 H 0.006 0.994 24 H 0.016 0.984 25 H 0.031 0.969 26 H 0.249 0.751 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.138 0.862 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.828 -15.827 -6.914 18.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.328 5.328 3 C -0.395 4.395 4 H 0.084 0.916 5 C -0.243 4.243 6 N -0.582 5.582 7 Si 0.795 3.205 8 H -0.192 1.192 9 H -0.215 1.215 10 H -0.219 1.219 11 C 0.083 3.917 12 H 0.069 0.931 13 C -0.235 4.235 14 S -0.039 6.039 15 C -0.182 4.182 16 C -0.089 4.089 17 C -0.129 4.129 18 C -0.142 4.142 19 C -0.142 4.142 20 C -0.149 4.149 21 C -0.084 4.084 22 C -0.124 4.124 23 H 0.024 0.976 24 H 0.035 0.965 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.156 0.844 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.134 0.866 35 H 0.087 0.913 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.396 -15.883 -5.940 18.123 hybrid contribution -0.937 1.846 -0.663 2.174 sum 5.458 -14.037 -6.604 16.445 Atomic orbital electron populations 1.20509 0.82607 0.95937 0.97713 1.44294 1.02040 1.00828 1.85598 1.19543 0.98578 0.86571 1.34776 0.91578 1.25767 0.98575 1.01761 0.98225 1.70222 1.20701 1.27662 1.39580 0.85214 0.78071 0.80088 0.77159 1.19225 1.21497 1.21885 1.20197 0.95385 0.85076 0.91046 0.93127 1.23756 1.00720 0.96112 1.02863 1.86393 1.62150 1.18171 1.37215 1.22667 1.02295 1.01379 0.91864 1.19426 0.98436 0.94718 0.96333 1.21365 0.94356 1.00078 0.97051 1.21464 1.00093 0.96503 0.96103 1.21397 0.97207 0.94989 1.00612 1.21400 0.96640 0.99959 0.96914 1.19586 0.97305 0.94959 0.96570 1.21128 0.95711 0.97199 0.98333 0.97599 0.96517 0.95083 0.94158 0.90718 0.90684 0.88390 0.84408 0.83366 0.83187 0.84223 0.86626 0.91318 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.69 8.17 127.77 1.04 9.73 16 2 N -0.60 -30.26 2.69 -705.50 -1.90 -32.15 16 3 C -0.26 -14.68 9.58 84.03 0.80 -13.88 16 4 H 0.07 3.64 7.81 -2.91 -0.02 3.62 16 5 C -0.05 -2.69 5.10 84.86 0.43 -2.25 16 6 N -0.94 -55.40 10.71 21.65 0.23 -55.16 16 7 Si 0.97 45.47 29.57 68.60 2.03 47.50 16 8 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 9 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 10 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 11 C 0.19 7.94 2.36 44.51 0.11 8.05 16 12 H 0.05 2.30 7.53 -2.38 -0.02 2.29 16 13 C -0.08 -3.23 5.05 71.76 0.36 -2.87 16 14 S -0.27 -8.55 21.78 -56.49 -1.23 -9.78 16 15 C -0.04 -0.84 5.87 71.45 0.42 -0.42 16 16 C -0.09 -2.26 5.10 -20.02 -0.10 -2.36 16 17 C -0.11 -2.29 9.68 22.35 0.22 -2.07 16 18 C -0.12 -2.45 10.06 22.29 0.22 -2.23 16 19 C -0.12 -2.81 10.04 22.26 0.22 -2.59 16 20 C -0.13 -3.74 9.63 22.40 0.22 -3.53 16 21 C -0.08 -2.49 4.92 -19.87 -0.10 -2.59 16 22 C -0.08 -2.93 3.93 29.88 0.12 -2.81 16 23 H 0.01 0.31 7.34 -2.38 -0.02 0.29 16 24 H 0.02 0.87 7.35 -2.39 -0.02 0.85 16 25 H 0.03 1.28 7.15 -2.39 -0.02 1.26 16 26 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.07 3.33 8.14 -2.55 -0.02 3.31 16 28 H 0.07 2.75 7.74 -2.55 -0.02 2.74 16 29 H 0.10 2.26 7.10 -2.39 -0.02 2.24 16 30 H 0.14 2.43 7.90 -2.38 -0.02 2.41 16 31 H 0.15 2.24 7.95 -2.91 -0.02 2.22 16 32 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.12 3.37 7.98 -2.91 -0.02 3.35 16 35 H 0.07 2.56 7.77 -2.39 -0.02 2.54 16 36 H 0.07 2.21 6.45 -2.39 -0.02 2.19 16 Total: -1.00 -63.39 298.19 4.15 -59.23 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 1.05 Total: 10.18 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 3.97 Total: -19.81 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -1.66 Total: -87.32 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.23 Total: -9.78 kcal Total: -63.39 4.15 -59.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259741176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.438 kcal (2) G-P(sol) polarization free energy of solvation -63.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds