Wall clock time and date at job start Mon Mar 30 2020 06:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36932 * 120.00085 * 2 1 4 4 H 1.07999 * 119.99738 * 156.20628 * 3 2 1 5 5 C 1.38808 * 119.99972 * 336.19997 * 3 2 1 6 6 N 1.31621 * 119.99970 * 330.50104 * 5 3 2 7 7 Si 1.86799 * 119.99935 * 150.49952 * 5 3 2 8 8 H 1.48502 * 109.47025 * 269.99823 * 7 5 3 9 9 H 1.48503 * 109.47320 * 150.00263 * 7 5 3 10 10 H 1.48502 * 109.47313 * 30.00094 * 7 5 3 11 11 C 1.46504 * 119.99483 * 180.02562 * 2 1 3 12 12 H 1.09006 * 109.07464 * 179.07087 * 11 2 1 13 13 C 1.51167 * 109.08969 * 298.07345 * 11 2 1 14 14 C 1.51516 * 116.26701 * 192.07642 * 13 11 2 15 15 S 1.82053 * 109.88897 * 290.29319 * 14 13 11 16 16 C 1.77500 * 101.34569 * 80.81523 * 15 14 13 17 17 C 1.38722 * 120.03080 * 113.17051 * 16 15 14 18 18 C 1.38319 * 119.16922 * 178.85752 * 17 16 15 19 19 C 1.38329 * 119.88935 * 0.04066 * 18 17 16 20 20 C 1.38282 * 120.54831 * 0.28141 * 19 18 17 21 21 C 1.37511 * 118.80080 * 292.61928 * 16 15 14 22 22 C 1.51376 * 121.57904 * 1.41177 * 21 16 15 23 23 H 1.08995 * 109.47522 * 93.00961 * 1 2 3 24 24 H 1.09005 * 109.46627 * 213.01120 * 1 2 3 25 25 H 1.08999 * 109.46921 * 333.00372 * 1 2 3 26 26 H 0.96999 * 120.00384 * 354.58239 * 6 5 3 27 27 H 1.08993 * 108.12126 * 313.84865 * 13 11 2 28 28 H 1.08995 * 108.11659 * 70.31398 * 13 11 2 29 29 H 1.08996 * 109.39467 * 170.16979 * 14 13 11 30 30 H 1.08994 * 109.33683 * 50.38181 * 14 13 11 31 31 H 1.08004 * 120.41469 * 358.88274 * 17 16 15 32 32 H 1.08001 * 120.05789 * 180.02562 * 18 17 16 33 33 H 1.08000 * 119.72342 * 180.29947 * 19 18 17 34 34 H 1.08001 * 120.13314 * 179.97438 * 20 19 18 35 35 H 1.08997 * 109.59173 * 315.65396 * 22 21 16 36 36 H 1.08997 * 109.71667 * 195.28512 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1609 1.2255 0.3774 5 6 1.5442 2.3369 -0.4851 6 7 0.6307 2.2522 -1.4288 7 14 2.0259 4.0060 0.2015 8 1 1.1560 4.3348 1.3592 9 1 1.8611 5.0405 -0.8511 10 1 3.4436 3.9696 0.6421 11 6 2.1974 -1.2688 -0.0006 12 1 3.2677 -1.0624 -0.0172 13 6 1.8624 -2.0336 1.2596 14 6 2.7357 -3.2326 1.5685 15 16 2.4120 -4.5609 0.3663 16 6 3.3883 -4.0260 -1.0163 17 6 4.4963 -4.7620 -1.4099 18 6 5.2304 -4.3420 -2.5044 19 6 4.8550 -3.2003 -3.1893 20 6 3.7529 -2.4691 -2.7858 21 6 3.0173 -2.8844 -1.6870 22 6 1.8213 -2.0637 -1.2540 23 1 -0.3634 -0.0540 -1.0262 24 1 -0.3633 -0.8618 0.5599 25 1 -0.3633 0.9157 0.4665 26 1 0.4366 1.3956 -1.8406 27 1 1.9234 -1.3438 2.1012 28 1 0.8305 -2.3764 1.1837 29 1 2.5147 -3.5920 2.5735 30 1 3.7841 -2.9398 1.5111 31 1 4.7819 -5.6520 -0.8688 32 1 6.0955 -4.9044 -2.8236 33 1 5.4273 -2.8775 -4.0464 34 1 3.4660 -1.5785 -3.3252 35 1 0.9855 -2.7263 -1.0293 36 1 1.5387 -1.3765 -2.0514 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259945374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:39 Heat of formation + Delta-G solvation = 42.119799 kcal Electronic energy + Delta-G solvation = -17973.485094 eV Core-core repulsion = 15355.983694 eV Total energy + Delta-G solvation = -2617.501400 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.30458 -37.06865 -33.87532 -31.82330 -30.84007 -30.52648 -27.60585 -26.13781 -24.35780 -22.67001 -22.25703 -21.30712 -19.13513 -17.50874 -17.22831 -15.94334 -15.41093 -14.75435 -14.62243 -14.15915 -13.83401 -13.60183 -13.37289 -13.01282 -12.91868 -12.74025 -12.37266 -11.80086 -11.58373 -11.19890 -11.07446 -10.76306 -10.73445 -10.56189 -10.42651 -10.09476 -10.03242 -9.94482 -9.49539 -8.79561 -8.52387 -8.36354 -7.49650 -6.95793 -6.10049 -3.21851 1.17804 1.49666 2.00025 2.71681 3.50039 3.51125 3.67991 3.86156 4.53096 4.91225 5.00645 5.05974 5.11693 5.21411 5.34039 5.44780 5.46278 5.59886 5.73783 5.77600 5.88639 5.96620 6.14764 6.23253 6.29715 6.36511 6.42705 6.52284 6.57115 6.67056 6.81835 6.88344 6.97899 7.07834 7.12337 7.97866 8.54561 9.09439 9.83048 10.22215 11.17882 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.024065 B = 0.006422 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.226747 B = 4358.887477 C = 4977.315573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.133 3.867 2 N -0.595 5.595 3 C -0.358 4.358 4 H 0.057 0.943 5 C -0.019 4.019 6 N -0.910 5.910 7 Si 1.063 2.937 8 H -0.293 1.293 9 H -0.290 1.290 10 H -0.293 1.293 11 C 0.188 3.812 12 H 0.059 0.941 13 C -0.133 4.133 14 C -0.079 4.079 15 S -0.177 6.177 16 C -0.105 4.105 17 C -0.077 4.077 18 C -0.139 4.139 19 C -0.102 4.102 20 C -0.119 4.119 21 C -0.030 4.030 22 C -0.104 4.104 23 H 0.010 0.990 24 H 0.017 0.983 25 H 0.051 0.949 26 H 0.270 0.730 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.077 0.923 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.994 -12.797 1.000 14.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.317 5.317 3 C -0.487 4.487 4 H 0.075 0.925 5 C -0.222 4.222 6 N -0.549 5.549 7 Si 0.893 3.107 8 H -0.220 1.220 9 H -0.217 1.217 10 H -0.219 1.219 11 C 0.080 3.920 12 H 0.078 0.922 13 C -0.174 4.174 14 C -0.227 4.227 15 S 0.057 5.943 16 C -0.216 4.216 17 C -0.098 4.098 18 C -0.159 4.159 19 C -0.121 4.121 20 C -0.139 4.139 21 C -0.034 4.034 22 C -0.143 4.143 23 H 0.028 0.972 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.095 0.905 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.934 -12.066 1.157 13.087 hybrid contribution 1.201 -0.551 -0.226 1.341 sum 6.135 -12.617 0.931 14.060 Atomic orbital electron populations 1.20949 0.83963 0.98627 0.97656 1.44048 1.00941 1.00677 1.86006 1.19981 1.01028 0.86801 1.40887 0.92495 1.25744 0.98937 1.01915 0.95641 1.70759 1.35795 1.28307 1.20047 0.83554 0.75229 0.75961 0.75982 1.22040 1.21673 1.21906 1.19889 0.96327 0.85951 0.89860 0.92239 1.21661 0.99464 0.95471 1.00836 1.23341 1.03515 0.96562 0.99252 1.85526 1.63525 1.34726 1.10511 1.21172 0.99940 0.99531 1.00954 1.21289 0.92963 0.98938 0.96595 1.21125 1.00441 0.97690 0.96665 1.21251 0.96589 0.94916 0.99296 1.21381 0.95546 1.00033 0.96925 1.20321 0.96457 0.93462 0.93120 1.21735 0.94361 0.97546 1.00684 0.97182 0.96431 0.93069 0.91870 0.91009 0.91803 0.88032 0.89937 0.85385 0.85966 0.86102 0.85408 0.90457 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.12 8.35 59.85 0.50 3.62 16 2 N -0.59 -14.48 2.55 -174.47 -0.45 -14.93 16 3 C -0.36 -9.83 9.38 -15.06 -0.14 -9.98 16 4 H 0.06 1.59 7.95 -52.49 -0.42 1.17 16 5 C -0.02 -0.54 4.61 -17.43 -0.08 -0.62 16 6 N -0.91 -26.89 12.74 55.49 0.71 -26.19 16 7 Si 1.06 25.16 30.01 -169.99 -5.10 20.06 16 8 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.19 3.84 2.37 -68.79 -0.16 3.67 16 12 H 0.06 1.31 7.48 -51.93 -0.39 0.93 16 13 C -0.13 -2.31 4.15 -28.40 -0.12 -2.43 16 14 C -0.08 -1.14 6.18 36.41 0.23 -0.92 16 15 S -0.18 -2.66 20.79 -107.50 -2.24 -4.90 16 16 C -0.10 -1.65 5.61 -39.67 -0.22 -1.87 16 17 C -0.08 -1.04 9.85 -39.37 -0.39 -1.43 16 18 C -0.14 -1.73 10.06 -39.52 -0.40 -2.13 16 19 C -0.10 -1.36 10.02 -39.53 -0.40 -1.76 16 20 C -0.12 -1.90 9.66 -39.44 -0.38 -2.28 16 21 C -0.03 -0.51 4.92 -104.43 -0.51 -1.02 16 22 C -0.10 -1.96 4.51 -27.49 -0.12 -2.08 16 23 H 0.01 0.25 6.87 -51.93 -0.36 -0.11 16 24 H 0.02 0.36 6.68 -51.93 -0.35 0.01 16 25 H 0.05 1.30 7.27 -51.93 -0.38 0.92 16 26 H 0.27 8.01 6.37 -40.82 -0.26 7.75 16 27 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 28 H 0.06 1.11 6.80 -51.93 -0.35 0.76 16 29 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.21 8.12 -51.93 -0.42 0.78 16 31 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.13 2.06 7.97 -52.49 -0.42 1.64 16 35 H 0.08 1.43 7.05 -51.93 -0.37 1.06 16 36 H 0.08 1.67 7.79 -51.93 -0.40 1.27 16 LS Contribution 297.89 15.07 4.49 4.49 Total: -1.00 -29.46 297.89 -9.81 -39.27 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.02 Total: 1.43 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -2.20 Total: -19.23 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.26 Total: -41.12 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.10 Total: 20.06 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -2.24 Total: -4.90 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.46 -9.81 -39.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259945374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.385 kcal (2) G-P(sol) polarization free energy of solvation -29.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds