Wall clock time and date at job start Mon Mar 30 2020 06:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36932 * 120.00085 * 2 1 4 4 H 1.07999 * 119.99738 * 156.20628 * 3 2 1 5 5 C 1.38808 * 119.99972 * 336.19997 * 3 2 1 6 6 N 1.31621 * 119.99970 * 330.50104 * 5 3 2 7 7 Si 1.86799 * 119.99935 * 150.49952 * 5 3 2 8 8 H 1.48502 * 109.47025 * 269.99823 * 7 5 3 9 9 H 1.48503 * 109.47320 * 150.00263 * 7 5 3 10 10 H 1.48502 * 109.47313 * 30.00094 * 7 5 3 11 11 C 1.46504 * 119.99483 * 180.02562 * 2 1 3 12 12 H 1.09006 * 109.07464 * 179.07087 * 11 2 1 13 13 C 1.51167 * 109.08969 * 298.07345 * 11 2 1 14 14 C 1.51516 * 116.26701 * 192.07642 * 13 11 2 15 15 S 1.82053 * 109.88897 * 290.29319 * 14 13 11 16 16 C 1.77500 * 101.34569 * 80.81523 * 15 14 13 17 17 C 1.38722 * 120.03080 * 113.17051 * 16 15 14 18 18 C 1.38319 * 119.16922 * 178.85752 * 17 16 15 19 19 C 1.38329 * 119.88935 * 0.04066 * 18 17 16 20 20 C 1.38282 * 120.54831 * 0.28141 * 19 18 17 21 21 C 1.37511 * 118.80080 * 292.61928 * 16 15 14 22 22 C 1.51376 * 121.57904 * 1.41177 * 21 16 15 23 23 H 1.08995 * 109.47522 * 93.00961 * 1 2 3 24 24 H 1.09005 * 109.46627 * 213.01120 * 1 2 3 25 25 H 1.08999 * 109.46921 * 333.00372 * 1 2 3 26 26 H 0.96999 * 120.00384 * 354.58239 * 6 5 3 27 27 H 1.08993 * 108.12126 * 313.84865 * 13 11 2 28 28 H 1.08995 * 108.11659 * 70.31398 * 13 11 2 29 29 H 1.08996 * 109.39467 * 170.16979 * 14 13 11 30 30 H 1.08994 * 109.33683 * 50.38181 * 14 13 11 31 31 H 1.08004 * 120.41469 * 358.88274 * 17 16 15 32 32 H 1.08001 * 120.05789 * 180.02562 * 18 17 16 33 33 H 1.08000 * 119.72342 * 180.29947 * 19 18 17 34 34 H 1.08001 * 120.13314 * 179.97438 * 20 19 18 35 35 H 1.08997 * 109.59173 * 315.65396 * 22 21 16 36 36 H 1.08997 * 109.71667 * 195.28512 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1609 1.2255 0.3774 5 6 1.5442 2.3369 -0.4851 6 7 0.6307 2.2522 -1.4288 7 14 2.0259 4.0060 0.2015 8 1 1.1560 4.3348 1.3592 9 1 1.8611 5.0405 -0.8511 10 1 3.4436 3.9696 0.6421 11 6 2.1974 -1.2688 -0.0006 12 1 3.2677 -1.0624 -0.0172 13 6 1.8624 -2.0336 1.2596 14 6 2.7357 -3.2326 1.5685 15 16 2.4120 -4.5609 0.3663 16 6 3.3883 -4.0260 -1.0163 17 6 4.4963 -4.7620 -1.4099 18 6 5.2304 -4.3420 -2.5044 19 6 4.8550 -3.2003 -3.1893 20 6 3.7529 -2.4691 -2.7858 21 6 3.0173 -2.8844 -1.6870 22 6 1.8213 -2.0637 -1.2540 23 1 -0.3634 -0.0540 -1.0262 24 1 -0.3633 -0.8618 0.5599 25 1 -0.3633 0.9157 0.4665 26 1 0.4366 1.3956 -1.8406 27 1 1.9234 -1.3438 2.1012 28 1 0.8305 -2.3764 1.1837 29 1 2.5147 -3.5920 2.5735 30 1 3.7841 -2.9398 1.5111 31 1 4.7819 -5.6520 -0.8688 32 1 6.0955 -4.9044 -2.8236 33 1 5.4273 -2.8775 -4.0464 34 1 3.4660 -1.5785 -3.3252 35 1 0.9855 -2.7263 -1.0293 36 1 1.5387 -1.3765 -2.0514 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259945374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:39 Heat of formation + Delta-G solvation = 27.551722 kcal Electronic energy + Delta-G solvation = -17974.116813 eV Core-core repulsion = 15355.983694 eV Total energy + Delta-G solvation = -2618.133119 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.55484 -38.70551 -35.65446 -33.08142 -32.48816 -31.88673 -29.10539 -28.14131 -25.87551 -24.01647 -23.79868 -22.61940 -20.78170 -19.51135 -18.39718 -17.24224 -16.87947 -16.23236 -15.85388 -15.81075 -15.49120 -15.33770 -14.85036 -14.37489 -14.23056 -14.05691 -13.82171 -13.42883 -13.04486 -12.83915 -12.71624 -12.47604 -12.36609 -12.11113 -11.91302 -11.85076 -11.71779 -11.47909 -11.14530 -10.47366 -9.94646 -9.75858 -9.02148 -8.65083 -8.28801 -5.39217 0.03595 0.34714 0.83268 1.53769 1.56677 1.63318 1.81140 2.61154 2.72277 3.15387 3.35404 3.68970 3.84009 3.90771 4.07397 4.12054 4.22414 4.29761 4.42967 4.46878 4.50499 4.60277 4.70650 4.78232 4.84842 4.88861 4.89417 5.02372 5.09021 5.24988 5.33444 5.35660 5.46293 5.57259 5.80376 5.94064 6.35771 7.02338 7.75647 8.14569 8.96335 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.024065 B = 0.006422 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.226747 B = 4358.887477 C = 4977.315573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.148 3.852 2 N -0.610 5.610 3 C -0.362 4.362 4 H 0.048 0.952 5 C -0.069 4.069 6 N -0.937 5.937 7 Si 1.112 2.888 8 H -0.283 1.283 9 H -0.294 1.294 10 H -0.275 1.275 11 C 0.190 3.810 12 H 0.037 0.963 13 C -0.123 4.123 14 C -0.072 4.072 15 S -0.170 6.170 16 C -0.119 4.119 17 C -0.076 4.076 18 C -0.126 4.126 19 C -0.099 4.099 20 C -0.142 4.142 21 C -0.056 4.056 22 C -0.088 4.088 23 H -0.006 1.006 24 H 0.048 0.952 25 H 0.025 0.975 26 H 0.256 0.744 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.131 0.869 30 H 0.083 0.917 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.148 0.852 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.813 -14.721 1.787 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 N -0.333 5.333 3 C -0.492 4.492 4 H 0.066 0.934 5 C -0.267 4.267 6 N -0.578 5.578 7 Si 0.937 3.063 8 H -0.210 1.210 9 H -0.221 1.221 10 H -0.200 1.200 11 C 0.083 3.917 12 H 0.055 0.945 13 C -0.164 4.164 14 C -0.220 4.220 15 S 0.064 5.936 16 C -0.230 4.230 17 C -0.097 4.097 18 C -0.145 4.145 19 C -0.117 4.117 20 C -0.162 4.162 21 C -0.059 4.059 22 C -0.127 4.127 23 H 0.012 0.988 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.149 0.851 30 H 0.102 0.898 31 H 0.172 0.828 32 H 0.180 0.820 33 H 0.166 0.834 34 H 0.129 0.871 35 H 0.097 0.903 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.769 -14.037 1.953 15.705 hybrid contribution 0.712 -0.071 -0.527 0.889 sum 7.482 -14.108 1.426 16.032 Atomic orbital electron populations 1.20754 0.83647 0.98544 0.96832 1.44227 1.01351 1.01405 1.86323 1.20163 1.00882 0.88315 1.39795 0.93427 1.27051 0.98864 1.05291 0.95453 1.70878 1.37681 1.27469 1.21781 0.82894 0.76029 0.71986 0.75401 1.20960 1.22072 1.20022 1.19965 0.94500 0.85085 0.92117 0.94451 1.21481 1.00202 0.96212 0.98458 1.23311 1.02780 0.95223 1.00723 1.85478 1.63901 1.34078 1.10119 1.21355 1.01015 0.99357 1.01274 1.21669 0.91897 0.99227 0.96861 1.21596 1.00798 0.96843 0.95287 1.21572 0.95431 0.94746 0.99936 1.21422 0.97105 1.00435 0.97224 1.20161 0.96411 0.94674 0.94688 1.21402 0.95685 0.96934 0.98721 0.98817 0.93401 0.95587 0.93391 0.91862 0.91688 0.85055 0.89849 0.82803 0.81962 0.83390 0.87062 0.90293 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.15 8.35 127.77 1.07 8.21 16 2 N -0.61 -30.72 2.55 -705.91 -1.80 -32.53 16 3 C -0.36 -20.46 9.38 84.03 0.79 -19.67 16 4 H 0.05 2.73 7.95 -2.91 -0.02 2.71 16 5 C -0.07 -3.96 4.61 84.86 0.39 -3.56 16 6 N -0.94 -57.38 12.74 21.65 0.28 -57.11 16 7 Si 1.11 51.44 30.01 68.60 2.06 53.50 16 8 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 9 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 C 0.19 7.95 2.37 44.43 0.11 8.06 16 12 H 0.04 1.70 7.48 -2.38 -0.02 1.69 16 13 C -0.12 -4.18 4.15 29.51 0.12 -4.06 16 14 C -0.07 -1.96 6.18 71.50 0.44 -1.52 16 15 S -0.17 -4.75 20.79 -56.49 -1.17 -5.93 16 16 C -0.12 -3.55 5.61 22.21 0.12 -3.42 16 17 C -0.08 -1.80 9.85 22.40 0.22 -1.58 16 18 C -0.13 -2.63 10.06 22.31 0.22 -2.41 16 19 C -0.10 -2.41 10.02 22.30 0.22 -2.19 16 20 C -0.14 -4.58 9.66 22.36 0.22 -4.36 16 21 C -0.06 -1.92 4.92 -19.74 -0.10 -2.02 16 22 C -0.09 -3.45 4.51 30.10 0.14 -3.31 16 23 H -0.01 -0.32 6.87 -2.39 -0.02 -0.34 16 24 H 0.05 1.98 6.68 -2.38 -0.02 1.96 16 25 H 0.03 1.35 7.27 -2.39 -0.02 1.34 16 26 H 0.26 15.99 6.37 -92.71 -0.59 15.40 16 27 H 0.06 2.26 8.13 -2.39 -0.02 2.24 16 28 H 0.06 2.19 6.80 -2.39 -0.02 2.17 16 29 H 0.13 2.81 8.14 -2.39 -0.02 2.80 16 30 H 0.08 2.28 8.12 -2.39 -0.02 2.26 16 31 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 33 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.11 3.83 7.97 -2.91 -0.02 3.80 16 35 H 0.08 2.99 7.05 -2.39 -0.02 2.97 16 36 H 0.05 2.09 7.79 -2.39 -0.02 2.07 16 Total: -1.00 -65.62 297.89 4.56 -61.06 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 1.24 Total: 12.81 kcal Atomic # 6 Polarization: -35.78 SS G_CDS: 3.96 Total: -31.81 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -1.53 Total: -89.63 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 2.06 Total: 53.50 kcal Atomic # 16 Polarization: -4.75 SS G_CDS: -1.17 Total: -5.93 kcal Total: -65.62 4.56 -61.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259945374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.616 kcal (2) G-P(sol) polarization free energy of solvation -65.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds