Wall clock time and date at job start Mon Mar 30 2020 06:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.96589 * 2 1 4 4 C 1.54143 * 111.09770 * 235.82931 * 2 1 3 5 5 C 1.50872 * 110.50573 * 213.73217 * 4 2 1 6 6 C 1.38928 * 115.36418 * 20.61139 * 5 4 2 7 7 C 1.38777 * 121.15034 * 179.29511 * 6 5 4 8 8 C 1.38076 * 120.15822 * 0.21027 * 7 6 5 9 9 C 1.38284 * 119.29063 * 0.02562 * 8 7 6 10 10 C 1.37736 * 120.54300 * 359.90740 * 9 8 7 11 11 C 1.50706 * 119.47036 * 179.97438 * 10 9 8 12 12 H 1.08997 * 109.47078 * 144.97542 * 11 10 9 13 13 N 1.46903 * 109.47255 * 24.97505 * 11 10 9 14 14 C 1.53004 * 109.46782 * 264.97450 * 11 10 9 15 15 C 1.50699 * 109.46754 * 184.99961 * 14 11 10 16 16 H 1.07996 * 120.00327 * 0.02562 * 15 14 11 17 17 C 1.37881 * 119.99593 * 180.02562 * 15 14 11 18 18 N 1.31506 * 120.00276 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99795 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46975 * 60.00232 * 19 17 15 21 21 H 1.48494 * 109.47105 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47183 * 300.00245 * 19 17 15 23 23 S 1.77433 * 108.27626 * 359.27833 * 6 5 4 24 24 H 1.09002 * 109.47153 * 297.32384 * 1 2 3 25 25 H 1.09001 * 109.46832 * 177.32575 * 1 2 3 26 26 H 1.09004 * 109.47261 * 57.32556 * 1 2 3 27 27 H 1.08995 * 109.28269 * 334.01165 * 4 2 1 28 28 H 1.09001 * 109.27705 * 93.45438 * 4 2 1 29 29 H 1.07999 * 119.92242 * 180.21686 * 7 6 5 30 30 H 1.08000 * 120.35247 * 180.02562 * 8 7 6 31 31 H 1.08003 * 119.72212 * 179.88501 * 9 8 7 32 32 H 1.00893 * 110.99753 * 176.04744 * 13 11 10 33 33 H 1.00896 * 110.99846 * 300.00015 * 13 11 10 34 34 H 1.08994 * 109.47034 * 304.99737 * 14 11 10 35 35 H 1.08997 * 109.47093 * 65.00499 * 14 11 10 36 36 H 0.97006 * 120.00526 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9200 1.0179 0.0000 4 6 2.0848 -0.8077 -1.1898 5 6 3.3715 -1.4963 -0.8071 6 6 3.5733 -1.6648 0.5571 7 6 4.7099 -2.2964 1.0421 8 6 5.6685 -2.7675 0.1670 9 6 5.4825 -2.6020 -1.1933 10 6 4.3537 -1.9764 -1.6744 11 6 4.1760 -1.8085 -3.1615 12 1 3.1198 -1.9019 -3.4140 13 7 4.9414 -2.8455 -3.8664 14 6 4.6809 -0.4270 -3.5827 15 6 4.3915 -0.2110 -5.0458 16 1 3.8966 -0.9817 -5.6179 17 6 4.7586 0.9707 -5.6540 18 7 5.3608 1.9095 -4.9572 19 14 4.4005 1.2382 -7.4678 20 1 2.9362 1.1546 -7.7008 21 1 4.8904 2.5791 -7.8765 22 1 5.0895 0.1939 -8.2676 23 16 2.1899 -0.9595 1.4156 24 1 -0.3633 0.4717 0.9130 25 1 -0.3633 -1.0266 -0.0479 26 1 -0.3634 0.5548 -0.8651 27 1 1.3516 -1.5563 -1.4899 28 1 2.2722 -0.1340 -2.0260 29 1 4.8449 -2.4199 2.1064 30 1 6.5540 -3.2598 0.5409 31 1 6.2288 -2.9662 -1.8839 32 1 4.7875 -2.7944 -4.8622 33 1 5.9245 -2.7801 -3.6486 34 1 4.1751 0.3393 -2.9953 35 1 5.7557 -0.3654 -3.4120 36 1 5.6195 2.7407 -5.3852 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260068426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:20 Heat of formation + Delta-G solvation = 6.919771 kcal Electronic energy + Delta-G solvation = -17546.489288 eV Core-core repulsion = 14927.461500 eV Total energy + Delta-G solvation = -2619.027788 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.44503 -35.55455 -35.17085 -32.56675 -31.09329 -29.79522 -28.06462 -26.47048 -24.63043 -22.87863 -21.85452 -20.68760 -19.82010 -17.21960 -16.39038 -15.84440 -15.46006 -14.93009 -14.67995 -14.54589 -14.17759 -13.48989 -13.05211 -12.86500 -12.71098 -12.49672 -12.10840 -12.04746 -11.95197 -11.64185 -11.40807 -11.17635 -10.95811 -10.81996 -10.50066 -10.32383 -10.05859 -9.82554 -9.29213 -9.20651 -8.53806 -8.32315 -7.72562 -7.19741 -6.13744 -4.19149 1.49128 1.67846 1.80703 2.44277 3.23703 3.29464 3.30930 3.98596 4.33682 4.57664 4.79650 5.03485 5.12662 5.21293 5.24514 5.35502 5.48569 5.57415 5.68098 5.76657 5.80812 5.87301 5.93934 6.06715 6.09807 6.33198 6.39391 6.53935 6.64652 6.74388 6.98950 7.23080 7.39026 7.52073 7.79513 7.98142 8.14483 8.26153 8.87306 9.46450 10.96553 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.020327 B = 0.006130 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.176408 B = 4566.897478 C = 5454.307783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.049 4.049 3 H 0.104 0.896 4 C -0.088 4.088 5 C -0.097 4.097 6 C -0.078 4.078 7 C -0.105 4.105 8 C -0.107 4.107 9 C -0.108 4.108 10 C -0.026 4.026 11 C 0.123 3.877 12 H 0.077 0.923 13 N -0.840 5.840 14 C 0.004 3.996 15 C -0.529 4.529 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 S -0.174 6.174 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.347 0.653 33 H 0.329 0.671 34 H 0.020 0.980 35 H 0.017 0.983 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 -5.919 9.637 12.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.177 4.177 3 H 0.123 0.877 4 C -0.126 4.126 5 C -0.103 4.103 6 C -0.190 4.190 7 C -0.128 4.128 8 C -0.127 4.127 9 C -0.128 4.128 10 C -0.028 4.028 11 C 0.011 3.989 12 H 0.095 0.905 13 N -0.369 5.369 14 C -0.034 4.034 15 C -0.567 4.567 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.201 1.201 23 S 0.068 5.932 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.120 0.880 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.160 0.840 33 H 0.141 0.859 34 H 0.038 0.962 35 H 0.035 0.965 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.715 -6.299 11.268 14.117 hybrid contribution 0.969 1.248 -2.642 3.078 sum -4.746 -5.050 8.626 11.065 Atomic orbital electron populations 1.21703 0.91295 1.03250 1.02712 1.23990 0.99310 1.01166 0.93240 0.87736 1.21022 0.93915 0.99183 0.98477 1.20550 0.96290 1.01292 0.92165 1.21847 0.97840 1.04140 0.95203 1.20245 0.92543 1.00667 0.99384 1.21009 0.98477 0.99957 0.93277 1.20796 0.97662 0.99291 0.95083 1.19911 0.92352 0.94538 0.96027 1.20560 0.98291 0.92914 0.87130 0.90469 1.59300 1.12929 1.50522 1.14195 1.19755 0.96670 0.90619 0.96396 1.21105 1.39346 1.01546 0.94665 0.92545 1.25009 0.94915 0.96030 0.98111 1.69956 1.39939 1.06637 1.36249 0.86652 0.78746 0.77389 0.85203 1.20172 1.21263 1.20148 1.85762 1.28582 1.57828 1.21077 0.91793 0.91358 0.90629 0.89247 0.88032 0.86308 0.85675 0.85509 0.83953 0.85858 0.96218 0.96476 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 9.31 37.16 0.35 -1.05 16 2 C -0.05 -0.66 4.04 -26.14 -0.11 -0.77 16 3 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 4 C -0.09 -1.39 5.03 -27.20 -0.14 -1.53 16 5 C -0.10 -1.73 5.94 -103.79 -0.62 -2.35 16 6 C -0.08 -1.31 6.48 -39.13 -0.25 -1.57 16 7 C -0.10 -1.61 10.05 -39.44 -0.40 -2.01 16 8 C -0.11 -1.59 10.08 -39.62 -0.40 -1.99 16 9 C -0.11 -1.81 9.21 -39.75 -0.37 -2.18 16 10 C -0.03 -0.48 5.08 -104.31 -0.53 -1.01 16 11 C 0.12 2.45 2.54 -68.86 -0.17 2.28 16 12 H 0.08 1.58 7.61 -51.93 -0.39 1.18 16 13 N -0.84 -15.34 8.77 -5.65 -0.05 -15.38 16 14 C 0.00 0.10 4.59 -27.88 -0.13 -0.03 16 15 C -0.53 -13.88 8.55 -34.44 -0.29 -14.17 16 16 H 0.06 1.43 7.15 -52.49 -0.38 1.05 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.76 13.28 55.43 0.74 -25.02 16 19 Si 0.89 20.77 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 S -0.17 -2.60 22.56 -107.50 -2.43 -5.02 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.09 1.30 7.79 -51.93 -0.40 0.89 16 28 H 0.10 1.75 7.10 -51.93 -0.37 1.39 16 29 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.13 1.97 6.19 -52.48 -0.33 1.65 16 32 H 0.35 6.44 7.90 -39.30 -0.31 6.13 16 33 H 0.33 5.71 7.15 -39.29 -0.28 5.43 16 34 H 0.02 0.52 7.34 -51.93 -0.38 0.14 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 305.11 15.07 4.60 4.60 Total: -1.00 -29.00 305.11 -10.24 -39.24 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -4.93 Total: 10.63 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -3.15 Total: -24.78 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.69 Total: -40.41 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -2.43 Total: -5.02 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.00 -10.24 -39.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260068426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.164 kcal (2) G-P(sol) polarization free energy of solvation -29.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds