Wall clock time and date at job start Mon Mar 30 2020 06:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.96589 * 2 1 4 4 C 1.54143 * 111.09770 * 235.82931 * 2 1 3 5 5 C 1.50872 * 110.50573 * 213.73217 * 4 2 1 6 6 C 1.38928 * 115.36418 * 20.61139 * 5 4 2 7 7 C 1.38777 * 121.15034 * 179.29511 * 6 5 4 8 8 C 1.38076 * 120.15822 * 0.21027 * 7 6 5 9 9 C 1.38284 * 119.29063 * 0.02562 * 8 7 6 10 10 C 1.37736 * 120.54300 * 359.90740 * 9 8 7 11 11 C 1.50706 * 119.47036 * 179.97438 * 10 9 8 12 12 H 1.08997 * 109.47078 * 144.97542 * 11 10 9 13 13 N 1.46903 * 109.47255 * 24.97505 * 11 10 9 14 14 C 1.53004 * 109.46782 * 264.97450 * 11 10 9 15 15 C 1.50699 * 109.46754 * 184.99961 * 14 11 10 16 16 H 1.07996 * 120.00327 * 0.02562 * 15 14 11 17 17 C 1.37881 * 119.99593 * 180.02562 * 15 14 11 18 18 N 1.31506 * 120.00276 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99795 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46975 * 60.00232 * 19 17 15 21 21 H 1.48494 * 109.47105 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47183 * 300.00245 * 19 17 15 23 23 S 1.77433 * 108.27626 * 359.27833 * 6 5 4 24 24 H 1.09002 * 109.47153 * 297.32384 * 1 2 3 25 25 H 1.09001 * 109.46832 * 177.32575 * 1 2 3 26 26 H 1.09004 * 109.47261 * 57.32556 * 1 2 3 27 27 H 1.08995 * 109.28269 * 334.01165 * 4 2 1 28 28 H 1.09001 * 109.27705 * 93.45438 * 4 2 1 29 29 H 1.07999 * 119.92242 * 180.21686 * 7 6 5 30 30 H 1.08000 * 120.35247 * 180.02562 * 8 7 6 31 31 H 1.08003 * 119.72212 * 179.88501 * 9 8 7 32 32 H 1.00893 * 110.99753 * 176.04744 * 13 11 10 33 33 H 1.00896 * 110.99846 * 300.00015 * 13 11 10 34 34 H 1.08994 * 109.47034 * 304.99737 * 14 11 10 35 35 H 1.08997 * 109.47093 * 65.00499 * 14 11 10 36 36 H 0.97006 * 120.00526 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9200 1.0179 0.0000 4 6 2.0848 -0.8077 -1.1898 5 6 3.3715 -1.4963 -0.8071 6 6 3.5733 -1.6648 0.5571 7 6 4.7099 -2.2964 1.0421 8 6 5.6685 -2.7675 0.1670 9 6 5.4825 -2.6020 -1.1933 10 6 4.3537 -1.9764 -1.6744 11 6 4.1760 -1.8085 -3.1615 12 1 3.1198 -1.9019 -3.4140 13 7 4.9414 -2.8455 -3.8664 14 6 4.6809 -0.4270 -3.5827 15 6 4.3915 -0.2110 -5.0458 16 1 3.8966 -0.9817 -5.6179 17 6 4.7586 0.9707 -5.6540 18 7 5.3608 1.9095 -4.9572 19 14 4.4005 1.2382 -7.4678 20 1 2.9362 1.1546 -7.7008 21 1 4.8904 2.5791 -7.8765 22 1 5.0895 0.1939 -8.2676 23 16 2.1899 -0.9595 1.4156 24 1 -0.3633 0.4717 0.9130 25 1 -0.3633 -1.0266 -0.0479 26 1 -0.3634 0.5548 -0.8651 27 1 1.3516 -1.5563 -1.4899 28 1 2.2722 -0.1340 -2.0260 29 1 4.8449 -2.4199 2.1064 30 1 6.5540 -3.2598 0.5409 31 1 6.2288 -2.9662 -1.8839 32 1 4.7875 -2.7944 -4.8622 33 1 5.9245 -2.7801 -3.6486 34 1 4.1751 0.3393 -2.9953 35 1 5.7557 -0.3654 -3.4120 36 1 5.6195 2.7407 -5.3852 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260068426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:19 Heat of formation + Delta-G solvation = -9.254091 kcal Electronic energy + Delta-G solvation = -17547.190639 eV Core-core repulsion = 14927.461500 eV Total energy + Delta-G solvation = -2619.729139 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.75999 -37.14806 -36.35341 -34.56192 -32.22726 -31.16410 -29.95132 -27.63384 -26.34522 -24.27312 -23.30163 -21.90256 -21.32759 -18.88538 -18.01437 -17.07855 -16.85829 -16.61856 -16.19041 -15.81406 -15.39260 -14.92675 -14.59355 -14.27187 -14.19800 -13.96025 -13.69845 -13.31988 -13.24084 -12.90649 -12.83097 -12.71804 -12.43936 -12.36906 -12.02926 -11.89684 -11.81605 -11.18959 -11.04710 -10.63250 -10.52057 -9.72579 -9.28675 -8.39825 -8.23355 -6.36084 0.22980 0.38755 0.62562 1.24001 1.39363 1.40651 1.48635 2.37051 2.70788 3.09718 3.40971 3.68723 3.75292 3.90762 4.03830 4.11918 4.24642 4.41806 4.46202 4.55486 4.64618 4.66671 4.79634 4.82651 4.91657 4.97209 5.10217 5.19533 5.28994 5.35184 5.41561 5.51598 5.68676 5.74298 5.98341 6.12859 6.36626 6.68141 6.79860 7.34229 8.87221 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.020327 B = 0.006130 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.176408 B = 4566.897478 C = 5454.307783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.046 4.046 3 H 0.099 0.901 4 C -0.086 4.086 5 C -0.118 4.118 6 C -0.097 4.097 7 C -0.105 4.105 8 C -0.100 4.100 9 C -0.119 4.119 10 C -0.055 4.055 11 C 0.140 3.860 12 H 0.069 0.931 13 N -0.828 5.828 14 C 0.018 3.982 15 C -0.537 4.537 16 H 0.066 0.934 17 C 0.006 3.994 18 N -0.930 5.930 19 Si 0.962 3.038 20 H -0.268 1.268 21 H -0.288 1.288 22 H -0.265 1.265 23 S -0.164 6.164 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.145 0.855 30 H 0.163 0.837 31 H 0.135 0.865 32 H 0.346 0.654 33 H 0.335 0.665 34 H -0.012 1.012 35 H -0.013 1.013 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.306 -6.939 10.010 13.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.174 4.174 3 H 0.117 0.883 4 C -0.124 4.124 5 C -0.123 4.123 6 C -0.209 4.209 7 C -0.128 4.128 8 C -0.119 4.119 9 C -0.139 4.139 10 C -0.057 4.057 11 C 0.028 3.972 12 H 0.087 0.913 13 N -0.357 5.357 14 C -0.021 4.021 15 C -0.575 4.575 16 H 0.084 0.916 17 C -0.193 4.193 18 N -0.570 5.570 19 Si 0.787 3.213 20 H -0.193 1.193 21 H -0.214 1.214 22 H -0.190 1.190 23 S 0.077 5.923 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.117 0.883 28 H 0.095 0.905 29 H 0.163 0.837 30 H 0.180 0.820 31 H 0.153 0.847 32 H 0.159 0.841 33 H 0.148 0.852 34 H 0.007 0.993 35 H 0.006 0.994 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.203 -7.341 11.643 15.098 hybrid contribution 1.149 1.553 -2.683 3.306 sum -5.055 -5.789 8.960 11.804 Atomic orbital electron populations 1.21717 0.88739 1.03996 1.03960 1.24088 1.01299 1.00281 0.91752 0.88256 1.21014 0.93795 0.99053 0.98544 1.20812 0.96920 1.01719 0.92884 1.22194 0.99050 1.04568 0.95136 1.20679 0.91842 0.99415 1.00905 1.21405 0.99402 0.98942 0.92181 1.21028 0.97184 0.99179 0.96527 1.19909 0.94008 0.96770 0.95016 1.20212 0.97689 0.90545 0.88799 0.91274 1.59292 1.13271 1.49256 1.13924 1.19576 0.94387 0.92679 0.95427 1.21503 1.38667 1.01715 0.95629 0.91624 1.25913 0.94719 0.95826 1.02814 1.70102 1.41420 1.07205 1.38269 0.85547 0.78913 0.77291 0.79585 1.19273 1.21365 1.18965 1.85640 1.27803 1.57645 1.21204 0.90363 0.90843 0.89516 0.88287 0.90523 0.83723 0.81976 0.84739 0.84121 0.85172 0.99321 0.99419 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.31 71.98 0.67 -1.81 16 2 C -0.05 -1.23 4.04 30.98 0.13 -1.11 16 3 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 4 C -0.09 -2.77 5.03 30.29 0.15 -2.62 16 5 C -0.12 -4.22 5.94 -19.33 -0.11 -4.34 16 6 C -0.10 -3.19 6.48 22.56 0.15 -3.04 16 7 C -0.11 -3.01 10.05 22.36 0.22 -2.78 16 8 C -0.10 -2.73 10.08 22.24 0.22 -2.51 16 9 C -0.12 -3.90 9.21 22.16 0.20 -3.70 16 10 C -0.05 -2.07 5.08 -19.66 -0.10 -2.17 16 11 C 0.14 5.71 2.54 44.17 0.11 5.83 16 12 H 0.07 2.91 7.61 -2.39 -0.02 2.89 16 13 N -0.83 -30.18 8.77 -171.79 -1.51 -31.69 16 14 C 0.02 0.91 4.59 29.85 0.14 1.05 16 15 C -0.54 -28.69 8.55 25.60 0.22 -28.47 16 16 H 0.07 3.31 7.15 -2.91 -0.02 3.29 16 17 C 0.01 0.32 5.46 84.66 0.46 0.78 16 18 N -0.93 -55.25 13.28 21.45 0.28 -54.97 16 19 Si 0.96 42.70 29.54 68.60 2.03 44.72 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 23 S -0.16 -4.72 22.56 -56.49 -1.27 -6.00 16 24 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.39 8.04 -2.39 -0.02 1.37 16 26 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.10 2.90 7.79 -2.39 -0.02 2.88 16 28 H 0.08 2.81 7.10 -2.39 -0.02 2.80 16 29 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 30 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.13 4.07 6.19 -2.91 -0.02 4.05 16 32 H 0.35 12.73 7.90 -89.70 -0.71 12.02 16 33 H 0.34 11.60 7.15 -89.70 -0.64 10.95 16 34 H -0.01 -0.65 7.34 -2.39 -0.02 -0.67 16 35 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 36 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 Total: -1.00 -62.94 305.11 1.74 -61.20 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -0.25 Total: 31.62 kcal Atomic # 6 Polarization: -47.35 SS G_CDS: 2.46 Total: -44.89 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -1.22 Total: -86.66 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: -4.72 SS G_CDS: -1.27 Total: -6.00 kcal Total: -62.94 1.74 -61.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260068426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.943 kcal (2) G-P(sol) polarization free energy of solvation -62.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds