Wall clock time and date at job start Mon Mar 30 2020 06:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.99897 * 2 1 4 4 C 1.54143 * 111.10587 * 235.84349 * 2 1 3 5 5 C 1.50876 * 110.43172 * 270.33740 * 4 2 1 6 6 C 1.39598 * 126.82883 * 159.41491 * 5 4 2 7 7 C 1.37702 * 121.05611 * 179.62937 * 6 5 4 8 8 C 1.50695 * 119.72735 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.47334 * 339.99934 * 8 7 6 10 10 N 1.46901 * 109.46943 * 219.99797 * 8 7 6 11 11 C 1.52998 * 109.47366 * 100.00099 * 8 7 6 12 12 C 1.50698 * 109.47329 * 185.00008 * 11 8 7 13 13 H 1.07997 * 120.00018 * 359.97438 * 12 11 8 14 14 C 1.37877 * 120.00217 * 180.02562 * 12 11 8 15 15 N 1.31523 * 120.00036 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00366 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46987 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47232 * 119.99216 * 16 14 12 19 19 H 1.48496 * 109.47358 * 239.99651 * 16 14 12 20 20 C 1.38319 * 120.53799 * 359.97438 * 7 6 5 21 21 C 1.38027 * 119.29763 * 0.18723 * 20 7 6 22 22 C 1.38819 * 120.15668 * 359.97438 * 21 20 7 23 23 S 1.77436 * 130.56965 * 179.35648 * 22 21 20 24 24 H 1.09002 * 109.46572 * 184.14996 * 1 2 3 25 25 H 1.08997 * 109.47432 * 304.15737 * 1 2 3 26 26 H 1.09008 * 109.46681 * 64.15851 * 1 2 3 27 27 H 1.09002 * 109.28294 * 150.09773 * 4 2 1 28 28 H 1.08999 * 109.27966 * 30.57405 * 4 2 1 29 29 H 1.08003 * 119.47262 * 359.61458 * 6 5 4 30 30 H 1.00892 * 111.00115 * 300.00461 * 10 8 7 31 31 H 1.00903 * 110.99868 * 63.95837 * 10 8 7 32 32 H 1.09004 * 109.46990 * 305.00119 * 11 8 7 33 33 H 1.09003 * 109.47235 * 64.99657 * 11 8 7 34 34 H 0.96996 * 119.99977 * 180.02562 * 15 14 12 35 35 H 1.08001 * 120.34757 * 180.16779 * 20 7 6 36 36 H 1.08000 * 119.91846 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9206 1.0177 0.0000 4 6 2.0850 -0.8074 -1.1900 5 6 2.2669 -2.2549 -0.8053 6 6 2.3563 -3.3461 -1.6714 7 6 2.5305 -4.6238 -1.1886 8 6 2.6237 -5.7800 -2.1507 9 1 2.1909 -5.4913 -3.1086 10 7 1.8879 -6.9296 -1.6074 11 6 4.0920 -6.1616 -2.3487 12 6 4.1945 -7.2344 -3.4021 13 1 3.3017 -7.6071 -3.8820 14 6 5.4281 -7.7410 -3.7524 15 7 6.5154 -7.2876 -3.1676 16 14 5.5552 -9.0712 -5.0576 17 1 4.1973 -9.4059 -5.5571 18 1 6.3905 -8.5818 -6.1836 19 1 6.1786 -10.2839 -4.4694 20 6 2.6216 -4.8547 0.1722 21 6 2.5322 -3.7895 1.0454 22 6 2.3533 -2.5018 0.5587 23 16 2.1896 -0.9566 1.4154 24 1 -0.3632 -1.0250 0.0744 25 1 -0.3634 0.5770 0.8503 26 1 -0.3633 0.4480 -0.9250 27 1 3.0467 -0.3912 -1.4901 28 1 1.3882 -0.7419 -2.0256 29 1 2.2875 -3.1855 -2.7372 30 1 2.2702 -7.2164 -0.7189 31 1 0.9033 -6.7239 -1.5280 32 1 4.6556 -5.2846 -2.6672 33 1 4.5004 -6.5345 -1.4094 34 1 7.3832 -7.6437 -3.4143 35 1 2.7609 -5.8578 0.5474 36 1 2.6017 -3.9583 2.1099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260256718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:28 Heat of formation + Delta-G solvation = 9.978679 kcal Electronic energy + Delta-G solvation = -17107.516625 eV Core-core repulsion = 14488.621482 eV Total energy + Delta-G solvation = -2618.895144 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.54618 -36.40720 -34.54054 -32.42312 -30.94755 -30.05289 -28.22746 -26.80352 -24.53380 -22.77035 -22.26064 -21.28369 -19.15404 -17.63412 -16.41802 -15.72471 -15.26978 -15.06165 -14.86988 -14.75654 -14.29923 -13.67458 -13.40435 -13.10099 -12.93935 -12.79353 -12.41805 -12.09414 -11.71160 -11.56491 -11.35316 -11.11158 -11.04738 -10.72092 -10.58214 -10.24137 -10.11453 -9.81118 -9.10633 -8.98617 -8.61502 -8.30424 -7.99069 -7.30281 -5.91703 -3.90834 1.30874 1.49822 1.60472 2.24082 3.37019 3.44438 3.50070 3.81827 4.29424 4.50148 4.54841 4.63621 4.99834 5.02520 5.25061 5.31211 5.37892 5.42557 5.46199 5.53500 5.55123 5.61253 5.67932 5.87164 5.96123 6.05154 6.29925 6.39791 6.49777 6.71487 6.89484 7.10188 7.53204 7.69409 7.96668 8.08403 8.15867 8.51761 9.15753 9.71383 11.19998 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.037624 B = 0.004137 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.027193 B = 6766.895466 C = 6836.201130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.054 4.054 3 H 0.117 0.883 4 C -0.083 4.083 5 C -0.103 4.103 6 C -0.091 4.091 7 C -0.091 4.091 8 C 0.131 3.869 9 H 0.078 0.922 10 N -0.820 5.820 11 C 0.037 3.963 12 C -0.494 4.494 13 H 0.063 0.937 14 C 0.050 3.950 15 N -0.902 5.902 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.287 1.287 19 H -0.286 1.286 20 C -0.103 4.103 21 C -0.084 4.084 22 C -0.092 4.092 23 S -0.164 6.164 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.334 0.666 31 H 0.322 0.678 32 H 0.020 0.980 33 H 0.017 0.983 34 H 0.258 0.742 35 H 0.129 0.871 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.616 13.853 7.096 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.183 4.183 3 H 0.135 0.865 4 C -0.121 4.121 5 C -0.109 4.109 6 C -0.111 4.111 7 C -0.095 4.095 8 C 0.020 3.980 9 H 0.096 0.904 10 N -0.347 5.347 11 C 0.000 4.000 12 C -0.533 4.533 13 H 0.081 0.919 14 C -0.149 4.149 15 N -0.543 5.543 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.213 1.213 19 H -0.213 1.213 20 C -0.123 4.123 21 C -0.108 4.108 22 C -0.204 4.204 23 S 0.077 5.923 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.140 0.860 30 H 0.148 0.852 31 H 0.133 0.867 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.067 0.933 35 H 0.146 0.854 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.942 13.882 7.661 19.265 hybrid contribution -0.074 -0.474 -1.023 1.129 sum -11.016 13.408 6.639 18.579 Atomic orbital electron populations 1.21972 0.92184 1.03157 1.02422 1.23988 0.99260 1.01129 0.93910 0.86487 1.20967 1.02712 0.90525 0.97888 1.20740 1.02600 0.94694 0.92833 1.20729 1.00322 0.90902 0.99196 1.21259 0.95894 0.96723 0.95653 1.20843 0.99359 0.84186 0.93632 0.90402 1.58861 1.05234 1.37500 1.33139 1.19143 0.86689 0.96684 0.97522 1.21196 0.92496 1.19595 1.19995 0.91867 1.25028 0.95989 0.97101 0.96810 1.69986 0.97863 1.43435 1.42969 0.86529 0.77955 0.81856 0.81603 1.19709 1.21343 1.21252 1.20926 0.99963 0.98605 0.92841 1.20334 1.00927 0.89878 0.99617 1.21794 1.07444 0.95968 0.95156 1.85908 1.81608 1.04484 1.20307 0.91742 0.91588 0.91392 0.89005 0.89312 0.85985 0.85238 0.86704 0.96214 0.96470 0.93286 0.85369 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.30 37.16 0.35 -0.81 16 2 C -0.05 -0.53 4.03 -26.13 -0.11 -0.63 16 3 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.08 -0.91 5.83 -27.20 -0.16 -1.07 16 5 C -0.10 -1.50 5.98 -103.79 -0.62 -2.12 16 6 C -0.09 -1.46 9.59 -39.27 -0.38 -1.83 16 7 C -0.09 -1.58 4.93 -104.79 -0.52 -2.09 16 8 C 0.13 2.60 2.92 -68.87 -0.20 2.39 16 9 H 0.08 1.56 7.97 -51.93 -0.41 1.14 16 10 N -0.82 -14.77 8.77 -5.65 -0.05 -14.82 16 11 C 0.04 0.93 4.60 -27.89 -0.13 0.80 16 12 C -0.49 -13.85 8.84 -34.44 -0.30 -14.16 16 13 H 0.06 1.77 7.74 -52.49 -0.41 1.36 16 14 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 15 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 16 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 C -0.10 -1.66 9.30 -39.63 -0.37 -2.02 16 21 C -0.08 -1.27 10.05 -39.44 -0.40 -1.67 16 22 C -0.09 -1.37 6.48 -39.13 -0.25 -1.63 16 23 S -0.16 -2.12 22.55 -107.50 -2.42 -4.54 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 27 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.09 0.83 7.91 -51.93 -0.41 0.42 16 29 H 0.12 1.81 8.00 -52.48 -0.42 1.39 16 30 H 0.33 5.72 7.33 -39.30 -0.29 5.43 16 31 H 0.32 4.88 9.06 -39.29 -0.36 4.52 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.13 1.92 6.67 -52.49 -0.35 1.57 16 36 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 310.83 15.07 4.68 4.68 Total: -1.00 -31.17 310.83 -10.42 -41.59 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.16 Total: 6.13 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -3.18 Total: -23.49 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.69 Total: -41.37 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -2.42 Total: -4.54 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.17 -10.42 -41.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.567 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds