Wall clock time and date at job start Mon Mar 30 2020 06:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.99897 * 2 1 4 4 C 1.54143 * 111.10587 * 235.84349 * 2 1 3 5 5 C 1.50876 * 110.43172 * 270.33740 * 4 2 1 6 6 C 1.39598 * 126.82883 * 159.41491 * 5 4 2 7 7 C 1.37702 * 121.05611 * 179.62937 * 6 5 4 8 8 C 1.50695 * 119.72735 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.47334 * 339.99934 * 8 7 6 10 10 N 1.46901 * 109.46943 * 219.99797 * 8 7 6 11 11 C 1.52998 * 109.47366 * 100.00099 * 8 7 6 12 12 C 1.50698 * 109.47329 * 185.00008 * 11 8 7 13 13 H 1.07997 * 120.00018 * 359.97438 * 12 11 8 14 14 C 1.37877 * 120.00217 * 180.02562 * 12 11 8 15 15 N 1.31523 * 120.00036 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00366 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46987 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47232 * 119.99216 * 16 14 12 19 19 H 1.48496 * 109.47358 * 239.99651 * 16 14 12 20 20 C 1.38319 * 120.53799 * 359.97438 * 7 6 5 21 21 C 1.38027 * 119.29763 * 0.18723 * 20 7 6 22 22 C 1.38819 * 120.15668 * 359.97438 * 21 20 7 23 23 S 1.77436 * 130.56965 * 179.35648 * 22 21 20 24 24 H 1.09002 * 109.46572 * 184.14996 * 1 2 3 25 25 H 1.08997 * 109.47432 * 304.15737 * 1 2 3 26 26 H 1.09008 * 109.46681 * 64.15851 * 1 2 3 27 27 H 1.09002 * 109.28294 * 150.09773 * 4 2 1 28 28 H 1.08999 * 109.27966 * 30.57405 * 4 2 1 29 29 H 1.08003 * 119.47262 * 359.61458 * 6 5 4 30 30 H 1.00892 * 111.00115 * 300.00461 * 10 8 7 31 31 H 1.00903 * 110.99868 * 63.95837 * 10 8 7 32 32 H 1.09004 * 109.46990 * 305.00119 * 11 8 7 33 33 H 1.09003 * 109.47235 * 64.99657 * 11 8 7 34 34 H 0.96996 * 119.99977 * 180.02562 * 15 14 12 35 35 H 1.08001 * 120.34757 * 180.16779 * 20 7 6 36 36 H 1.08000 * 119.91846 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9206 1.0177 0.0000 4 6 2.0850 -0.8074 -1.1900 5 6 2.2669 -2.2549 -0.8053 6 6 2.3563 -3.3461 -1.6714 7 6 2.5305 -4.6238 -1.1886 8 6 2.6237 -5.7800 -2.1507 9 1 2.1909 -5.4913 -3.1086 10 7 1.8879 -6.9296 -1.6074 11 6 4.0920 -6.1616 -2.3487 12 6 4.1945 -7.2344 -3.4021 13 1 3.3017 -7.6071 -3.8820 14 6 5.4281 -7.7410 -3.7524 15 7 6.5154 -7.2876 -3.1676 16 14 5.5552 -9.0712 -5.0576 17 1 4.1973 -9.4059 -5.5571 18 1 6.3905 -8.5818 -6.1836 19 1 6.1786 -10.2839 -4.4694 20 6 2.6216 -4.8547 0.1722 21 6 2.5322 -3.7895 1.0454 22 6 2.3533 -2.5018 0.5587 23 16 2.1896 -0.9566 1.4154 24 1 -0.3632 -1.0250 0.0744 25 1 -0.3634 0.5770 0.8503 26 1 -0.3633 0.4480 -0.9250 27 1 3.0467 -0.3912 -1.4901 28 1 1.3882 -0.7419 -2.0256 29 1 2.2875 -3.1855 -2.7372 30 1 2.2702 -7.2164 -0.7189 31 1 0.9033 -6.7239 -1.5280 32 1 4.6556 -5.2846 -2.6672 33 1 4.5004 -6.5345 -1.4094 34 1 7.3832 -7.6437 -3.4143 35 1 2.7609 -5.8578 0.5474 36 1 2.6017 -3.9583 2.1099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260256718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:27 Heat of formation + Delta-G solvation = -8.300631 kcal Electronic energy + Delta-G solvation = -17108.309276 eV Core-core repulsion = 14488.621482 eV Total energy + Delta-G solvation = -2619.687794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.75748 -37.67948 -35.80246 -34.44954 -32.02791 -31.26611 -30.18405 -27.71365 -26.30325 -24.13122 -23.38682 -22.59603 -20.53605 -18.76160 -18.44024 -17.15449 -16.49055 -16.21834 -16.14302 -16.07753 -15.92052 -14.88182 -14.55032 -14.35705 -14.18010 -14.00974 -13.71756 -13.60323 -13.17712 -12.79719 -12.55497 -12.53659 -12.41868 -12.26316 -12.23183 -11.86877 -11.63351 -11.20964 -11.00109 -10.53182 -10.41722 -9.78684 -9.45295 -8.39138 -8.11898 -6.19084 0.12811 0.30361 0.60034 1.25941 1.42169 1.43202 1.56789 2.46031 2.60350 3.20926 3.39648 3.62443 3.84510 3.88387 3.92137 3.96419 4.24194 4.34215 4.44196 4.49537 4.63774 4.66273 4.80756 4.86188 4.88970 4.95760 5.07759 5.21491 5.23449 5.26271 5.45991 5.50485 5.72055 5.85791 5.88183 6.28628 6.49242 6.80535 6.95698 7.47960 8.99678 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.037624 B = 0.004137 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.027193 B = 6766.895466 C = 6836.201130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.041 4.041 3 H 0.145 0.855 4 C -0.085 4.085 5 C -0.105 4.105 6 C -0.102 4.102 7 C -0.110 4.110 8 C 0.148 3.852 9 H 0.074 0.926 10 N -0.827 5.827 11 C 0.046 3.954 12 C -0.506 4.506 13 H 0.062 0.938 14 C -0.006 4.006 15 N -0.940 5.940 16 Si 0.962 3.038 17 H -0.263 1.263 18 H -0.281 1.281 19 H -0.283 1.283 20 C -0.111 4.111 21 C -0.092 4.092 22 C -0.103 4.103 23 S -0.181 6.181 24 H 0.045 0.955 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.129 0.871 30 H 0.338 0.662 31 H 0.341 0.659 32 H -0.011 1.011 33 H -0.009 1.009 34 H 0.259 0.741 35 H 0.132 0.868 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.969 15.101 6.699 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.169 4.169 3 H 0.162 0.838 4 C -0.122 4.122 5 C -0.110 4.110 6 C -0.122 4.122 7 C -0.114 4.114 8 C 0.036 3.964 9 H 0.092 0.908 10 N -0.356 5.356 11 C 0.008 3.992 12 C -0.544 4.544 13 H 0.080 0.920 14 C -0.202 4.202 15 N -0.582 5.582 16 Si 0.787 3.213 17 H -0.187 1.187 18 H -0.207 1.207 19 H -0.209 1.209 20 C -0.131 4.131 21 C -0.115 4.115 22 C -0.216 4.216 23 S 0.060 5.940 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.128 0.872 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.008 0.992 33 H 0.009 0.991 34 H 0.068 0.932 35 H 0.150 0.850 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.325 15.140 7.273 20.833 hybrid contribution 0.322 -0.761 -0.848 1.184 sum -12.003 14.379 6.424 19.801 Atomic orbital electron populations 1.21974 0.90960 1.02449 1.04116 1.24210 1.00154 1.01472 0.91093 0.83770 1.21077 1.03857 0.88232 0.99083 1.21153 1.01217 0.96213 0.92434 1.20871 1.00496 0.90952 0.99930 1.21003 0.98302 0.96462 0.95628 1.20347 0.95789 0.85698 0.94544 0.90825 1.58746 1.06411 1.37002 1.33491 1.18938 0.90170 0.94698 0.95379 1.21541 0.92489 1.20011 1.20380 0.91957 1.25918 0.95684 0.99511 0.99096 1.70119 0.98427 1.44995 1.44651 0.85440 0.78276 0.78773 0.78771 1.18727 1.20717 1.20863 1.20996 1.00229 0.99271 0.92603 1.20544 1.00661 0.89948 1.00334 1.22131 1.06548 0.96847 0.96030 1.85950 1.81929 1.03765 1.22344 0.93545 0.90587 0.89063 0.88279 0.87169 0.85310 0.84779 0.84601 0.99235 0.99106 0.93187 0.85033 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.30 71.98 0.67 -1.16 16 2 C -0.04 -0.67 4.03 30.98 0.12 -0.55 16 3 H 0.14 1.64 8.14 -2.38 -0.02 1.62 16 4 C -0.08 -1.64 5.83 30.29 0.18 -1.46 16 5 C -0.10 -2.92 5.98 -19.33 -0.12 -3.03 16 6 C -0.10 -3.25 9.59 22.47 0.22 -3.03 16 7 C -0.11 -3.86 4.93 -19.97 -0.10 -3.96 16 8 C 0.15 5.97 2.92 44.17 0.13 6.10 16 9 H 0.07 2.99 7.97 -2.38 -0.02 2.97 16 10 N -0.83 -29.88 8.77 -171.80 -1.51 -31.38 16 11 C 0.05 2.39 4.60 29.85 0.14 2.53 16 12 C -0.51 -28.85 8.84 25.60 0.23 -28.63 16 13 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 14 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 15 N -0.94 -58.13 13.29 21.45 0.28 -57.85 16 16 Si 0.96 45.44 29.54 68.60 2.03 47.47 16 17 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 C -0.11 -3.61 9.30 22.24 0.21 -3.41 16 21 C -0.09 -2.75 10.05 22.36 0.22 -2.53 16 22 C -0.10 -3.02 6.48 22.56 0.15 -2.87 16 23 S -0.18 -4.36 22.55 -56.49 -1.27 -5.64 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.11 1.69 7.91 -2.39 -0.02 1.67 16 29 H 0.13 3.78 8.00 -2.91 -0.02 3.76 16 30 H 0.34 11.73 7.33 -89.70 -0.66 11.07 16 31 H 0.34 10.13 9.06 -89.69 -0.81 9.32 16 32 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 33 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.13 4.05 6.67 -2.91 -0.02 4.03 16 36 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -67.88 310.83 1.65 -66.23 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -0.38 Total: 23.05 kcal Atomic # 6 Polarization: -44.38 SS G_CDS: 2.50 Total: -41.88 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -1.22 Total: -89.23 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: -4.36 SS G_CDS: -1.27 Total: -5.64 kcal Total: -67.88 1.65 -66.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.926 kcal (2) G-P(sol) polarization free energy of solvation -67.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds