Wall clock time and date at job start Mon Mar 30 2020 06:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09007 * 110.99483 * 2 1 4 4 C 1.54129 * 111.10110 * 124.15161 * 2 1 3 5 5 C 1.50867 * 110.54036 * 89.77479 * 4 2 1 6 6 C 1.39603 * 126.82640 * 200.22413 * 5 4 2 7 7 C 1.37691 * 121.06292 * 180.22412 * 6 5 4 8 8 C 1.50703 * 119.73360 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.46334 * 20.00185 * 8 7 6 10 10 N 1.46891 * 109.47253 * 140.00129 * 8 7 6 11 11 C 1.53002 * 109.47245 * 260.00730 * 8 7 6 12 12 C 1.50700 * 109.46812 * 174.99695 * 11 8 7 13 13 H 1.07994 * 120.00299 * 359.97438 * 12 11 8 14 14 C 1.37881 * 119.99511 * 179.97438 * 12 11 8 15 15 N 1.31513 * 119.99692 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00188 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46968 * 89.99796 * 16 14 12 18 18 H 1.48497 * 109.46993 * 209.99979 * 16 14 12 19 19 H 1.48492 * 109.46969 * 330.00009 * 16 14 12 20 20 C 1.38321 * 120.54369 * 0.02677 * 7 6 5 21 21 C 1.38030 * 119.28752 * 359.73914 * 20 7 6 22 22 C 1.38814 * 120.16204 * 0.31934 * 21 20 7 23 23 S 1.77438 * 130.57304 * 180.15747 * 22 21 20 24 24 H 1.09004 * 109.46665 * 295.85108 * 1 2 3 25 25 H 1.08993 * 109.47330 * 55.84585 * 1 2 3 26 26 H 1.08994 * 109.46745 * 175.85518 * 1 2 3 27 27 H 1.09008 * 109.27031 * 329.48506 * 4 2 1 28 28 H 1.09006 * 109.20800 * 210.02538 * 4 2 1 29 29 H 1.08004 * 119.46818 * 0.24945 * 6 5 4 30 30 H 1.00900 * 111.00365 * 296.04727 * 10 8 7 31 31 H 1.00898 * 111.00199 * 60.00130 * 10 8 7 32 32 H 1.09001 * 109.46573 * 294.99171 * 11 8 7 33 33 H 1.08999 * 109.47347 * 54.99275 * 11 8 7 34 34 H 0.96995 * 119.99815 * 179.97438 * 15 14 12 35 35 H 1.07998 * 120.35883 * 179.97438 * 20 7 6 36 36 H 1.08004 * 119.91662 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9206 1.0177 0.0000 4 6 2.0850 -0.8072 1.1900 5 6 2.2704 -2.2547 0.8072 6 6 2.3676 -3.3439 1.6751 7 6 2.5412 -4.6223 1.1940 8 6 2.6420 -5.7763 2.1580 9 1 2.2142 -5.4864 3.1176 10 7 1.9052 -6.9283 1.6214 11 6 4.1121 -6.1549 2.3485 12 6 4.2225 -7.2254 3.4035 13 1 3.3331 -7.5980 3.8898 14 6 5.4590 -7.7289 3.7479 15 7 5.5553 -8.6627 4.6689 16 14 6.9974 -7.0838 2.9072 17 1 7.5312 -5.9278 3.6714 18 1 8.0209 -8.1584 2.8558 19 1 6.6628 -6.6523 1.5263 20 6 2.6240 -4.8561 -0.1668 21 6 2.5252 -3.7932 -1.0418 22 6 2.3514 -2.5042 -0.5566 23 16 2.1897 -0.9599 -1.4153 24 1 -0.3633 0.4481 0.9249 25 1 -0.3633 0.5769 -0.8504 26 1 -0.3632 -1.0249 -0.0743 27 1 1.3874 -0.7424 2.0252 28 1 3.0455 -0.3887 1.4905 29 1 2.3053 -3.1811 2.7410 30 1 0.9198 -6.7245 1.5471 31 1 2.2829 -7.2164 0.7312 32 1 4.5157 -6.5291 1.4076 33 1 4.6759 -5.2763 2.6619 34 1 6.4251 -9.0172 4.9109 35 1 2.7606 -5.8600 -0.5408 36 1 2.5888 -3.9641 -2.1063 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260256723.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:29 Heat of formation + Delta-G solvation = -5.208484 kcal Electronic energy + Delta-G solvation = -17175.841200 eV Core-core repulsion = 14556.287492 eV Total energy + Delta-G solvation = -2619.553708 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.78222 -37.72223 -35.80605 -34.44922 -32.04225 -31.29717 -30.76283 -27.72181 -26.23849 -23.94006 -23.38895 -22.47242 -20.57308 -18.94583 -18.65130 -17.23269 -16.44167 -16.17638 -16.08956 -16.07121 -15.94454 -14.99213 -14.72122 -14.47619 -14.22015 -14.00878 -13.81719 -13.68436 -13.33232 -12.88800 -12.57634 -12.49118 -12.35466 -12.29771 -11.98544 -11.90912 -11.68256 -11.28434 -11.01296 -10.71444 -10.47313 -9.79538 -9.44526 -8.40035 -8.20520 -6.20554 0.10985 0.29408 0.59409 1.25270 1.35043 1.36969 1.47706 2.39068 2.58099 3.13317 3.38031 3.62123 3.83227 3.86755 3.89886 3.93560 4.22796 4.33128 4.39469 4.48972 4.60345 4.66092 4.78232 4.84329 4.87544 4.88047 5.05610 5.13352 5.21307 5.23365 5.27238 5.38250 5.64602 5.69947 5.86819 6.35004 6.50450 6.78702 6.88726 7.40718 8.96640 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.031320 B = 0.004627 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.794250 B = 6050.353494 C = 6186.282306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.041 4.041 3 H 0.144 0.856 4 C -0.086 4.086 5 C -0.104 4.104 6 C -0.100 4.100 7 C -0.111 4.111 8 C 0.154 3.846 9 H 0.071 0.929 10 N -0.832 5.832 11 C 0.005 3.995 12 C -0.496 4.496 13 H 0.040 0.960 14 C 0.002 3.998 15 N -0.954 5.954 16 Si 0.941 3.059 17 H -0.270 1.270 18 H -0.286 1.286 19 H -0.253 1.253 20 C -0.110 4.110 21 C -0.091 4.091 22 C -0.101 4.101 23 S -0.183 6.183 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.130 0.870 30 H 0.342 0.658 31 H 0.340 0.660 32 H 0.016 0.984 33 H 0.015 0.985 34 H 0.263 0.737 35 H 0.136 0.864 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.634 19.945 -12.079 25.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 H 0.162 0.838 4 C -0.123 4.123 5 C -0.110 4.110 6 C -0.121 4.121 7 C -0.115 4.115 8 C 0.042 3.958 9 H 0.089 0.911 10 N -0.361 5.361 11 C -0.033 4.033 12 C -0.535 4.535 13 H 0.058 0.942 14 C -0.194 4.194 15 N -0.596 5.596 16 Si 0.766 3.234 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.177 1.177 20 C -0.130 4.130 21 C -0.114 4.114 22 C -0.214 4.214 23 S 0.058 5.942 24 H 0.109 0.891 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.148 0.852 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.071 0.929 35 H 0.154 0.846 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.032 19.907 -12.576 25.219 hybrid contribution 0.501 -0.283 0.414 0.709 sum -8.530 19.624 -12.162 24.613 Atomic orbital electron populations 1.21978 0.91106 1.02433 1.04074 1.24225 1.00038 1.01483 0.91121 0.83796 1.21077 1.03914 0.88346 0.99009 1.21141 1.01227 0.96178 0.92431 1.20877 1.00283 0.90897 1.00007 1.20940 0.98866 0.96162 0.95556 1.20171 0.95191 0.85731 0.94733 0.91074 1.58704 1.06635 1.37080 1.33725 1.19511 0.92846 0.95097 0.95809 1.21280 0.93114 1.19519 1.19566 0.94193 1.25894 1.02418 0.95300 0.95754 1.70065 1.25228 1.30530 1.33824 0.85796 0.79217 0.78138 0.80256 1.19498 1.21219 1.17699 1.21029 1.00127 0.99405 0.92422 1.20554 1.00589 0.89859 1.00394 1.22145 1.06395 0.96842 0.95973 1.86021 1.81897 1.03810 1.22422 0.89142 0.90653 0.93545 0.87290 0.88093 0.85214 0.84514 0.84523 0.96592 0.96663 0.92857 0.84638 0.84413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.30 71.98 0.67 -1.03 16 2 C -0.04 -0.60 4.04 30.98 0.13 -0.47 16 3 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 4 C -0.09 -1.48 5.82 30.28 0.18 -1.31 16 5 C -0.10 -2.63 5.98 -19.33 -0.12 -2.75 16 6 C -0.10 -2.89 9.59 22.47 0.22 -2.67 16 7 C -0.11 -3.53 4.93 -19.97 -0.10 -3.63 16 8 C 0.15 5.85 2.92 44.17 0.13 5.98 16 9 H 0.07 2.84 7.97 -2.39 -0.02 2.82 16 10 N -0.83 -29.56 8.77 -171.81 -1.51 -31.07 16 11 C 0.01 0.24 3.67 29.85 0.11 0.35 16 12 C -0.50 -28.75 9.39 25.60 0.24 -28.51 16 13 H 0.04 2.58 7.99 -2.91 -0.02 2.55 16 14 C 0.00 0.11 5.47 84.66 0.46 0.57 16 15 N -0.95 -60.99 13.96 21.45 0.30 -60.69 16 16 Si 0.94 45.41 27.47 68.60 1.88 47.29 16 17 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 19 H -0.25 -11.49 6.54 99.48 0.65 -10.84 16 20 C -0.11 -3.18 9.30 22.24 0.21 -2.97 16 21 C -0.09 -2.44 10.05 22.36 0.22 -2.22 16 22 C -0.10 -2.69 6.48 22.56 0.15 -2.54 16 23 S -0.18 -4.05 22.56 -56.49 -1.27 -5.32 16 24 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.11 1.50 7.91 -2.38 -0.02 1.48 16 28 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.13 3.46 8.00 -2.91 -0.02 3.44 16 30 H 0.34 10.13 9.06 -89.69 -0.81 9.32 16 31 H 0.34 11.14 7.33 -89.70 -0.66 10.49 16 32 H 0.02 0.74 7.20 -2.39 -0.02 0.73 16 33 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 34 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 35 H 0.14 3.61 6.66 -2.91 -0.02 3.59 16 36 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -69.52 307.23 1.46 -68.07 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -0.44 Total: 22.93 kcal Atomic # 6 Polarization: -43.69 SS G_CDS: 2.49 Total: -41.20 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -1.21 Total: -91.76 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Atomic # 16 Polarization: -4.05 SS G_CDS: -1.27 Total: -5.32 kcal Total: -69.52 1.46 -68.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256723.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.857 kcal (2) G-P(sol) polarization free energy of solvation -69.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds