Wall clock time and date at job start Mon Mar 30 2020 06:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.99941 * 2 1 4 4 C 1.54134 * 111.09470 * 235.85392 * 2 1 3 5 5 C 1.50876 * 110.47640 * 213.92997 * 4 2 1 6 6 C 1.39757 * 126.69916 * 200.21615 * 5 4 2 7 7 C 1.37704 * 121.01072 * 180.26862 * 6 5 4 8 8 C 1.50696 * 119.72616 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47323 * 20.03022 * 8 7 6 10 10 N 1.46903 * 109.46755 * 140.02015 * 8 7 6 11 11 C 1.52993 * 109.47385 * 260.02225 * 8 7 6 12 12 C 1.50707 * 109.47153 * 175.00391 * 11 8 7 13 13 H 1.07994 * 120.00169 * 0.02562 * 12 11 8 14 14 C 1.37878 * 119.99861 * 179.97438 * 12 11 8 15 15 N 1.31515 * 120.00230 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99795 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47162 * 60.00488 * 16 14 12 18 18 H 1.48502 * 109.46969 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47191 * 300.00335 * 16 14 12 20 20 C 1.38313 * 120.54122 * 359.97438 * 7 6 5 21 21 C 1.38033 * 119.29396 * 359.87652 * 20 7 6 22 22 C 1.38705 * 115.49377 * 20.22453 * 5 4 2 23 23 S 1.77441 * 108.24052 * 359.66603 * 22 5 4 24 24 H 1.09003 * 109.47539 * 184.15127 * 1 2 3 25 25 H 1.09009 * 109.46857 * 304.14459 * 1 2 3 26 26 H 1.09001 * 109.47423 * 64.14352 * 1 2 3 27 27 H 1.09002 * 109.27162 * 334.18111 * 4 2 1 28 28 H 1.09002 * 109.27028 * 93.67815 * 4 2 1 29 29 H 1.08001 * 119.51869 * 0.22604 * 6 5 4 30 30 H 1.00904 * 110.99748 * 60.00074 * 10 8 7 31 31 H 1.00902 * 110.99977 * 183.95142 * 10 8 7 32 32 H 1.09000 * 109.47325 * 294.99926 * 11 8 7 33 33 H 1.08997 * 109.47310 * 55.00541 * 11 8 7 34 34 H 0.96993 * 120.00192 * 180.02562 * 15 14 12 35 35 H 1.08007 * 120.35579 * 179.89820 * 20 7 6 36 36 H 1.07996 * 119.92297 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9206 1.0176 0.0000 4 6 2.0847 -0.8072 -1.1901 5 6 3.3689 -1.4996 -0.8055 6 6 4.3511 -1.9810 -1.6753 7 6 5.4817 -2.6028 -1.1944 8 6 6.5223 -3.1114 -2.1585 9 1 6.4059 -2.6074 -3.1179 10 7 7.8622 -2.8385 -1.6215 11 6 6.3468 -4.6191 -2.3497 12 6 7.3060 -5.1067 -3.4049 13 1 7.9743 -4.4109 -3.8901 14 6 7.3312 -6.4414 -3.7499 15 7 6.5178 -7.2889 -3.1586 16 14 8.5197 -7.0456 -5.0582 17 1 9.9129 -6.7591 -4.6317 18 1 8.3494 -8.5091 -5.2437 19 1 8.2412 -6.3489 -6.3398 20 6 5.6701 -2.7643 0.1663 21 6 4.7124 -2.2927 1.0414 22 6 3.5736 -1.6642 0.5564 23 16 2.1898 -0.9600 1.4152 24 1 -0.3634 -1.0250 0.0744 25 1 -0.3633 0.5769 0.8506 26 1 -0.3634 0.4482 -0.9248 27 1 1.3500 -1.5536 -1.4923 28 1 2.2758 -0.1324 -2.0246 29 1 4.2216 -1.8643 -2.7412 30 1 7.9950 -3.2951 -0.7316 31 1 8.5776 -3.1119 -2.2785 32 1 6.5506 -5.1309 -1.4091 33 1 5.3243 -4.8290 -2.6634 34 1 6.5357 -8.2279 -3.4010 35 1 6.5572 -3.2539 0.5402 36 1 4.8493 -2.4130 2.1059 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260256732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:33 Heat of formation + Delta-G solvation = 4.841992 kcal Electronic energy + Delta-G solvation = -17016.198306 eV Core-core repulsion = 14397.080418 eV Total energy + Delta-G solvation = -2619.117887 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.39176 -36.29678 -34.65203 -32.51142 -30.95887 -30.23155 -27.98522 -26.53838 -24.70100 -22.80961 -22.01698 -21.34244 -19.15025 -17.42046 -16.76535 -15.97729 -15.17955 -14.96395 -14.86477 -14.64751 -13.80481 -13.64928 -13.30538 -13.06823 -12.90415 -12.58077 -12.26382 -12.07232 -11.93939 -11.75274 -11.58515 -11.09124 -11.04181 -10.83826 -10.61402 -10.27245 -10.13339 -9.89178 -9.28010 -9.12203 -8.52180 -8.46032 -7.82530 -7.18910 -6.10767 -4.16009 1.43725 1.60987 1.69091 2.33882 3.26073 3.31532 3.33126 3.94797 4.31694 4.37365 4.55160 4.78195 5.06603 5.10010 5.22621 5.27950 5.35822 5.43839 5.55956 5.62569 5.66261 5.71237 5.83090 5.87206 6.03907 6.14602 6.40371 6.50557 6.62288 6.67773 7.03156 7.20301 7.42920 7.54592 7.82429 8.00584 8.17550 8.29227 8.90476 9.49359 10.99702 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.035993 B = 0.004109 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.749319 B = 6813.130026 C = 7050.121151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 H 0.102 0.898 4 C -0.082 4.082 5 C -0.106 4.106 6 C -0.094 4.094 7 C -0.041 4.041 8 C 0.125 3.875 9 H 0.077 0.923 10 N -0.840 5.840 11 C 0.001 3.999 12 C -0.528 4.528 13 H 0.057 0.943 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.091 4.091 21 C -0.087 4.087 22 C -0.092 4.092 23 S -0.169 6.169 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.329 0.671 31 H 0.347 0.653 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.262 0.738 35 H 0.129 0.871 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.796 13.205 6.053 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.181 4.181 3 H 0.120 0.880 4 C -0.120 4.120 5 C -0.112 4.112 6 C -0.114 4.114 7 C -0.043 4.043 8 C 0.013 3.987 9 H 0.095 0.905 10 N -0.368 5.368 11 C -0.037 4.037 12 C -0.566 4.566 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.111 4.111 21 C -0.110 4.110 22 C -0.204 4.204 23 S 0.071 5.929 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.161 0.839 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.146 0.854 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.584 13.736 7.279 18.263 hybrid contribution 1.259 -1.567 -2.003 2.838 sum -8.325 12.170 5.276 15.660 Atomic orbital electron populations 1.21715 0.91266 1.03469 1.02659 1.23944 0.99378 1.00943 0.93872 0.88007 1.20957 0.94400 0.98800 0.97851 1.20666 0.96068 1.01586 0.92835 1.20687 0.92954 0.98693 0.99115 1.19994 0.95141 0.94601 0.94599 1.20563 0.86387 0.97557 0.94166 0.90535 1.59272 1.03996 1.65472 1.08100 1.19793 0.97926 0.88687 0.97306 1.21112 1.20568 0.93358 1.21601 0.92526 1.25015 0.95736 0.96966 0.96418 1.69958 1.37355 1.03451 1.42095 0.86639 0.81424 0.77694 0.82142 1.20154 1.21271 1.20182 1.20882 0.98449 0.99025 0.92710 1.20339 0.91996 0.99062 0.99605 1.21708 0.98025 1.05607 0.95084 1.85901 1.28845 1.57730 1.20407 0.91139 0.91677 0.90891 0.89050 0.89493 0.86093 0.85941 0.83939 0.96364 0.96196 0.92794 0.85355 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 9.27 37.16 0.34 -0.70 16 2 C -0.05 -0.55 4.04 -26.14 -0.11 -0.65 16 3 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 4 C -0.08 -0.96 5.87 -27.20 -0.16 -1.12 16 5 C -0.11 -1.63 5.98 -103.80 -0.62 -2.25 16 6 C -0.09 -1.59 9.59 -39.21 -0.38 -1.97 16 7 C -0.04 -0.75 4.94 -104.79 -0.52 -1.27 16 8 C 0.12 2.50 2.98 -68.87 -0.21 2.30 16 9 H 0.08 1.56 7.97 -51.93 -0.41 1.15 16 10 N -0.84 -15.44 9.02 -5.66 -0.05 -15.49 16 11 C 0.00 0.03 4.60 -27.88 -0.13 -0.10 16 12 C -0.53 -14.10 8.55 -34.44 -0.29 -14.40 16 13 H 0.06 1.45 7.14 -52.49 -0.37 1.07 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 16 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.09 -1.55 9.30 -39.63 -0.37 -1.92 16 21 C -0.09 -1.39 10.05 -39.44 -0.40 -1.78 16 22 C -0.09 -1.46 6.48 -39.19 -0.25 -1.72 16 23 S -0.17 -2.29 22.56 -107.50 -2.43 -4.72 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 1.01 7.85 -51.93 -0.41 0.61 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.12 1.88 8.00 -52.49 -0.42 1.46 16 30 H 0.33 5.75 7.33 -39.29 -0.29 5.46 16 31 H 0.35 6.49 7.90 -39.29 -0.31 6.18 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.13 2.05 6.67 -52.48 -0.35 1.70 16 36 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 309.06 15.07 4.66 4.66 Total: -1.00 -29.61 309.06 -10.36 -39.97 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.08 Total: 8.98 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -3.18 Total: -23.99 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.69 Total: -40.89 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.43 Total: -4.72 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.61 -10.36 -39.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.816 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds