Wall clock time and date at job start Mon Mar 30 2020 06:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.99941 * 2 1 4 4 C 1.54134 * 111.09470 * 235.85392 * 2 1 3 5 5 C 1.50876 * 110.47640 * 213.92997 * 4 2 1 6 6 C 1.39757 * 126.69916 * 200.21615 * 5 4 2 7 7 C 1.37704 * 121.01072 * 180.26862 * 6 5 4 8 8 C 1.50696 * 119.72616 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47323 * 20.03022 * 8 7 6 10 10 N 1.46903 * 109.46755 * 140.02015 * 8 7 6 11 11 C 1.52993 * 109.47385 * 260.02225 * 8 7 6 12 12 C 1.50707 * 109.47153 * 175.00391 * 11 8 7 13 13 H 1.07994 * 120.00169 * 0.02562 * 12 11 8 14 14 C 1.37878 * 119.99861 * 179.97438 * 12 11 8 15 15 N 1.31515 * 120.00230 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99795 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47162 * 60.00488 * 16 14 12 18 18 H 1.48502 * 109.46969 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47191 * 300.00335 * 16 14 12 20 20 C 1.38313 * 120.54122 * 359.97438 * 7 6 5 21 21 C 1.38033 * 119.29396 * 359.87652 * 20 7 6 22 22 C 1.38705 * 115.49377 * 20.22453 * 5 4 2 23 23 S 1.77441 * 108.24052 * 359.66603 * 22 5 4 24 24 H 1.09003 * 109.47539 * 184.15127 * 1 2 3 25 25 H 1.09009 * 109.46857 * 304.14459 * 1 2 3 26 26 H 1.09001 * 109.47423 * 64.14352 * 1 2 3 27 27 H 1.09002 * 109.27162 * 334.18111 * 4 2 1 28 28 H 1.09002 * 109.27028 * 93.67815 * 4 2 1 29 29 H 1.08001 * 119.51869 * 0.22604 * 6 5 4 30 30 H 1.00904 * 110.99748 * 60.00074 * 10 8 7 31 31 H 1.00902 * 110.99977 * 183.95142 * 10 8 7 32 32 H 1.09000 * 109.47325 * 294.99926 * 11 8 7 33 33 H 1.08997 * 109.47310 * 55.00541 * 11 8 7 34 34 H 0.96993 * 120.00192 * 180.02562 * 15 14 12 35 35 H 1.08007 * 120.35579 * 179.89820 * 20 7 6 36 36 H 1.07996 * 119.92297 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9206 1.0176 0.0000 4 6 2.0847 -0.8072 -1.1901 5 6 3.3689 -1.4996 -0.8055 6 6 4.3511 -1.9810 -1.6753 7 6 5.4817 -2.6028 -1.1944 8 6 6.5223 -3.1114 -2.1585 9 1 6.4059 -2.6074 -3.1179 10 7 7.8622 -2.8385 -1.6215 11 6 6.3468 -4.6191 -2.3497 12 6 7.3060 -5.1067 -3.4049 13 1 7.9743 -4.4109 -3.8901 14 6 7.3312 -6.4414 -3.7499 15 7 6.5178 -7.2889 -3.1586 16 14 8.5197 -7.0456 -5.0582 17 1 9.9129 -6.7591 -4.6317 18 1 8.3494 -8.5091 -5.2437 19 1 8.2412 -6.3489 -6.3398 20 6 5.6701 -2.7643 0.1663 21 6 4.7124 -2.2927 1.0414 22 6 3.5736 -1.6642 0.5564 23 16 2.1898 -0.9600 1.4152 24 1 -0.3634 -1.0250 0.0744 25 1 -0.3633 0.5769 0.8506 26 1 -0.3634 0.4482 -0.9248 27 1 1.3500 -1.5536 -1.4923 28 1 2.2758 -0.1324 -2.0246 29 1 4.2216 -1.8643 -2.7412 30 1 7.9950 -3.2951 -0.7316 31 1 8.5776 -3.1119 -2.2785 32 1 6.5506 -5.1309 -1.4091 33 1 5.3243 -4.8290 -2.6634 34 1 6.5357 -8.2279 -3.4010 35 1 6.5572 -3.2539 0.5402 36 1 4.8493 -2.4130 2.1059 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260256732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:33 Heat of formation + Delta-G solvation = -11.899780 kcal Electronic energy + Delta-G solvation = -17016.924283 eV Core-core repulsion = 14397.080418 eV Total energy + Delta-G solvation = -2619.843865 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.66813 -37.66451 -35.89914 -34.46876 -32.05339 -31.54603 -29.90927 -27.50102 -26.42788 -24.21218 -23.21110 -22.64396 -20.55896 -18.80349 -18.47092 -17.25932 -16.62728 -16.42263 -16.24250 -15.92056 -15.12462 -14.84730 -14.58056 -14.36328 -14.31695 -14.10759 -13.79068 -13.35142 -13.20714 -12.87000 -12.78345 -12.61027 -12.38857 -12.34141 -12.11727 -11.87699 -11.83087 -11.24032 -10.99385 -10.62923 -10.45003 -9.73787 -9.42617 -8.35885 -8.21303 -6.35463 0.19861 0.35190 0.61645 1.29756 1.39997 1.41850 1.49733 2.37938 2.66229 3.10470 3.36046 3.66461 3.83924 3.89085 4.00515 4.16317 4.22701 4.39057 4.44467 4.51952 4.67481 4.70879 4.79881 4.84609 4.93992 4.94531 5.11210 5.23480 5.25822 5.27585 5.38901 5.45924 5.72461 5.74953 5.92159 6.13687 6.37085 6.69993 6.80870 7.34856 8.88214 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.035993 B = 0.004109 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.749319 B = 6813.130026 C = 7050.121151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.040 4.040 3 H 0.117 0.883 4 C -0.083 4.083 5 C -0.108 4.108 6 C -0.106 4.106 7 C -0.066 4.066 8 C 0.141 3.859 9 H 0.073 0.927 10 N -0.828 5.828 11 C 0.012 3.988 12 C -0.539 4.539 13 H 0.067 0.933 14 C 0.003 3.997 15 N -0.932 5.932 16 Si 0.964 3.036 17 H -0.264 1.264 18 H -0.288 1.288 19 H -0.268 1.268 20 C -0.102 4.102 21 C -0.093 4.093 22 C -0.106 4.106 23 S -0.185 6.185 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.129 0.871 30 H 0.334 0.666 31 H 0.346 0.654 32 H -0.008 1.008 33 H -0.015 1.015 34 H 0.263 0.737 35 H 0.132 0.868 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.352 14.858 5.541 18.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.168 4.168 3 H 0.135 0.865 4 C -0.121 4.121 5 C -0.114 4.114 6 C -0.127 4.127 7 C -0.068 4.068 8 C 0.029 3.971 9 H 0.091 0.909 10 N -0.357 5.357 11 C -0.027 4.027 12 C -0.576 4.576 13 H 0.085 0.915 14 C -0.195 4.195 15 N -0.572 5.572 16 Si 0.789 3.211 17 H -0.189 1.189 18 H -0.214 1.214 19 H -0.193 1.193 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.218 4.218 23 S 0.056 5.944 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.159 0.841 32 H 0.011 0.989 33 H 0.004 0.996 34 H 0.071 0.929 35 H 0.149 0.851 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.134 15.415 6.779 19.654 hybrid contribution 1.338 -2.021 -1.787 3.011 sum -8.796 13.395 4.992 16.784 Atomic orbital electron populations 1.21747 0.89119 1.03572 1.04364 1.24159 1.00896 1.00696 0.91064 0.86533 1.21066 0.92606 0.99362 0.99070 1.21114 0.96961 1.00826 0.92460 1.20851 0.93008 0.98883 0.99914 1.19917 0.95595 0.96559 0.94775 1.20248 0.87859 0.94111 0.94910 0.90917 1.59266 1.03144 1.65068 1.08204 1.19655 0.95496 0.92051 0.95453 1.21535 1.20659 0.93756 1.21694 0.91461 1.25950 0.97503 0.97310 0.98724 1.70107 1.39355 1.03740 1.43968 0.85509 0.79395 0.76861 0.79325 1.18882 1.21360 1.19276 1.20971 0.99174 0.99495 0.92545 1.20558 0.91957 0.98775 1.00362 1.22067 0.98573 1.05138 0.96016 1.85944 1.27766 1.58199 1.22476 0.91755 0.90774 0.88409 0.88322 0.87250 0.85337 0.85321 0.84081 0.98941 0.99612 0.92858 0.85056 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 9.27 71.98 0.67 -0.93 16 2 C -0.04 -0.71 4.04 30.98 0.13 -0.59 16 3 H 0.12 1.78 8.14 -2.39 -0.02 1.77 16 4 C -0.08 -1.73 5.87 30.29 0.18 -1.55 16 5 C -0.11 -3.21 5.98 -19.33 -0.12 -3.33 16 6 C -0.11 -3.59 9.59 22.51 0.22 -3.38 16 7 C -0.07 -2.47 4.94 -19.97 -0.10 -2.57 16 8 C 0.14 5.77 2.98 44.17 0.13 5.90 16 9 H 0.07 3.01 7.97 -2.39 -0.02 2.99 16 10 N -0.83 -30.55 9.02 -171.81 -1.55 -32.10 16 11 C 0.01 0.62 4.60 29.85 0.14 0.76 16 12 C -0.54 -29.12 8.55 25.60 0.22 -28.91 16 13 H 0.07 3.42 7.14 -2.91 -0.02 3.40 16 14 C 0.00 0.19 5.46 84.65 0.46 0.65 16 15 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 16 Si 0.96 43.13 29.54 68.60 2.03 45.15 16 17 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 18 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 C -0.10 -3.54 9.30 22.24 0.21 -3.34 16 21 C -0.09 -2.98 10.05 22.36 0.22 -2.75 16 22 C -0.11 -3.28 6.48 22.52 0.15 -3.13 16 23 S -0.18 -4.70 22.56 -56.49 -1.27 -5.97 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 0.81 8.14 -2.38 -0.02 0.80 16 26 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.10 1.94 7.85 -2.39 -0.02 1.92 16 28 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.13 3.99 8.00 -2.91 -0.02 3.97 16 30 H 0.33 11.81 7.33 -89.69 -0.66 11.16 16 31 H 0.35 12.84 7.90 -89.69 -0.71 12.14 16 32 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 33 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 34 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 35 H 0.13 4.31 6.67 -2.91 -0.02 4.30 16 36 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -64.47 309.06 1.71 -62.76 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: -0.28 Total: 29.06 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 2.50 Total: -43.15 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -1.26 Total: -87.85 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -4.70 SS G_CDS: -1.27 Total: -5.97 kcal Total: -64.47 1.71 -62.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.862 kcal (2) G-P(sol) polarization free energy of solvation -64.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds