Wall clock time and date at job start Mon Mar 30 2020 06:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 110.96505 * 2 1 4 4 C 1.54140 * 111.13423 * 124.15699 * 2 1 3 5 5 C 1.50879 * 110.50250 * 146.28597 * 4 2 1 6 6 C 1.39602 * 126.83264 * 159.78667 * 5 4 2 7 7 C 1.37702 * 121.05534 * 179.40206 * 6 5 4 8 8 C 1.38325 * 120.54099 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.35146 * 180.10733 * 8 7 6 10 10 H 1.09008 * 109.46977 * 199.99578 * 9 8 7 11 11 N 1.46904 * 109.46837 * 319.98835 * 9 8 7 12 12 C 1.52997 * 109.47721 * 79.99428 * 9 8 7 13 13 C 1.50701 * 109.47212 * 174.99887 * 12 9 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 9 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 9 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.38018 * 119.29408 * 0.36717 * 8 7 6 22 22 C 1.38830 * 120.16067 * 359.47989 * 21 8 7 23 23 S 1.77438 * 130.56668 * 179.88830 * 22 21 8 24 24 H 1.09008 * 109.46878 * 182.67360 * 1 2 3 25 25 H 1.08995 * 109.47045 * 302.67343 * 1 2 3 26 26 H 1.08999 * 109.47058 * 62.67906 * 1 2 3 27 27 H 1.08996 * 109.28405 * 26.00217 * 4 2 1 28 28 H 1.09004 * 109.28420 * 266.56075 * 4 2 1 29 29 H 1.07997 * 119.47558 * 359.37139 * 6 5 4 30 30 H 1.07994 * 119.72938 * 179.97438 * 7 6 5 31 31 H 1.00898 * 111.00551 * 296.05373 * 11 9 8 32 32 H 1.00898 * 110.99372 * 60.01160 * 11 9 8 33 33 H 1.09002 * 109.47153 * 54.99889 * 12 9 8 34 34 H 1.09001 * 109.46832 * 295.00079 * 12 9 8 35 35 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 36 36 H 1.08006 * 119.92415 * 179.73038 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9200 1.0178 0.0000 4 6 2.0858 -0.8072 1.1897 5 6 3.3728 -1.4951 0.8064 6 6 4.3557 -1.9750 1.6739 7 6 5.4852 -2.5983 1.1924 8 6 5.6709 -2.7636 -0.1684 9 6 6.9075 -3.4485 -0.6906 10 1 7.0570 -3.1805 -1.7366 11 7 8.0727 -3.0214 0.0956 12 6 6.7397 -4.9645 -0.5715 13 6 7.9218 -5.6520 -1.2050 14 1 8.7137 -5.0662 -1.6478 15 6 7.9927 -7.0289 -1.2183 16 7 7.0287 -7.7423 -0.6786 17 14 9.4582 -7.8810 -2.0028 18 1 10.5175 -8.0842 -0.9821 19 1 9.0340 -9.1970 -2.5446 20 1 9.9883 -7.0394 -3.1055 21 6 4.7140 -2.2897 -1.0430 22 6 3.5738 -1.6642 -0.5573 23 16 2.1898 -0.9596 -1.4156 24 1 -0.3633 -1.0266 0.0479 25 1 -0.3633 0.5548 0.8650 26 1 -0.3633 0.4717 -0.9130 27 1 1.3531 -1.5562 1.4902 28 1 2.2731 -0.1334 2.0258 29 1 4.2285 -1.8551 2.7396 30 1 6.2322 -2.9611 1.8827 31 1 8.2433 -2.0335 -0.0182 32 1 7.9583 -3.2588 1.0696 33 1 5.8258 -5.2701 -1.0809 34 1 6.6792 -5.2418 0.4809 35 1 7.0785 -8.7110 -0.6883 36 1 4.8507 -2.4094 -2.1076 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260309553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:37 Heat of formation + Delta-G solvation = 9.776086 kcal Electronic energy + Delta-G solvation = -16983.467309 eV Core-core repulsion = 14364.563380 eV Total energy + Delta-G solvation = -2618.903929 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.50334 -36.44502 -34.46428 -32.42146 -30.77855 -30.54955 -28.28875 -26.66092 -24.08426 -23.25640 -21.91481 -21.25901 -19.65478 -17.12851 -16.46386 -15.90073 -15.41611 -15.36573 -14.73672 -14.47446 -14.25351 -13.67898 -13.60083 -13.29270 -12.74462 -12.58712 -12.26768 -12.09692 -12.05485 -11.69874 -11.31610 -11.09810 -11.00003 -10.71324 -10.53868 -10.22214 -10.07600 -9.73812 -9.36027 -9.07720 -8.34784 -8.26843 -7.97569 -7.35397 -5.90279 -3.89328 1.30685 1.50553 1.58275 2.26967 3.39850 3.45419 3.49863 3.80994 4.23464 4.46563 4.55610 4.69699 4.97793 4.99978 5.22821 5.26149 5.32777 5.37633 5.44494 5.49001 5.55526 5.59335 5.70304 5.79620 5.87114 6.14904 6.26751 6.40169 6.52200 6.71568 6.88052 7.10174 7.54413 7.69923 7.97205 8.09483 8.16304 8.52881 9.16801 9.72696 11.21471 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.036326 B = 0.004128 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.610165 B = 6781.935432 C = 7005.965303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.056 4.056 3 H 0.102 0.898 4 C -0.080 4.080 5 C -0.125 4.125 6 C -0.092 4.092 7 C -0.117 4.117 8 C -0.077 4.077 9 C 0.132 3.868 10 H 0.080 0.920 11 N -0.820 5.820 12 C 0.037 3.963 13 C -0.495 4.495 14 H 0.063 0.937 15 C 0.051 3.949 16 N -0.902 5.902 17 Si 0.893 3.107 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.274 1.274 21 C -0.083 4.083 22 C -0.074 4.074 23 S -0.160 6.160 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.322 0.678 32 H 0.334 0.666 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.258 0.742 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.173 16.602 4.666 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.185 4.185 3 H 0.120 0.880 4 C -0.117 4.117 5 C -0.131 4.131 6 C -0.112 4.112 7 C -0.137 4.137 8 C -0.082 4.082 9 C 0.020 3.980 10 H 0.098 0.902 11 N -0.346 5.346 12 C 0.000 4.000 13 C -0.533 4.533 14 H 0.081 0.919 15 C -0.149 4.149 16 N -0.543 5.543 17 Si 0.722 3.278 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.199 1.199 21 C -0.107 4.107 22 C -0.186 4.186 23 S 0.082 5.918 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.133 0.867 32 H 0.148 0.852 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.068 0.932 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.303 15.858 2.994 19.703 hybrid contribution 0.526 0.021 1.389 1.485 sum -10.777 15.879 4.383 19.685 Atomic orbital electron populations 1.21707 0.91188 1.03469 1.02695 1.23964 0.99485 1.00984 0.94019 0.87996 1.20925 0.94309 0.98698 0.97798 1.20672 0.96503 1.03004 0.92887 1.20694 0.93208 0.98574 0.98717 1.20808 0.97881 0.99542 0.95466 1.21395 0.98345 0.95029 0.93404 1.20841 0.82322 0.98217 0.96590 0.90225 1.58866 1.41356 1.20238 1.14186 1.19137 0.97467 0.85771 0.97604 1.21154 1.05401 0.90817 1.35967 0.91899 1.25024 0.96189 0.97712 0.95984 1.69974 1.32627 1.05734 1.45929 0.86569 0.82956 0.78732 0.79549 1.20854 1.21566 1.19943 1.20378 0.91593 0.98591 1.00138 1.21905 0.97600 1.03963 0.95154 1.86081 1.28485 1.57334 1.19904 0.91161 0.90959 0.91553 0.89193 0.89728 0.86389 0.85766 0.86661 0.85249 0.96148 0.96468 0.93236 0.85596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 9.32 37.16 0.35 -0.63 16 2 C -0.06 -0.55 4.04 -26.13 -0.11 -0.65 16 3 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.08 -0.83 5.87 -27.20 -0.16 -0.99 16 5 C -0.13 -1.76 5.98 -103.79 -0.62 -2.38 16 6 C -0.09 -1.30 9.97 -39.27 -0.39 -1.69 16 7 C -0.12 -1.85 9.27 -39.75 -0.37 -2.22 16 8 C -0.08 -1.37 4.94 -104.67 -0.52 -1.89 16 9 C 0.13 2.66 2.94 -68.86 -0.20 2.46 16 10 H 0.08 1.64 8.02 -51.92 -0.42 1.22 16 11 N -0.82 -14.89 8.78 -5.65 -0.05 -14.94 16 12 C 0.04 0.96 4.60 -27.88 -0.13 0.83 16 13 C -0.49 -14.00 8.84 -34.44 -0.30 -14.30 16 14 H 0.06 1.77 7.74 -52.49 -0.41 1.37 16 15 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 16 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 17 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 C -0.08 -1.44 9.69 -39.44 -0.38 -1.82 16 22 C -0.07 -1.17 6.48 -39.12 -0.25 -1.43 16 23 S -0.16 -2.18 22.56 -107.50 -2.43 -4.60 16 24 H 0.07 0.55 8.04 -51.92 -0.42 0.13 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.89 7.79 -51.93 -0.40 0.48 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.12 1.84 6.68 -52.49 -0.35 1.49 16 31 H 0.32 4.94 9.06 -39.29 -0.36 4.58 16 32 H 0.33 5.74 7.37 -39.29 -0.29 5.45 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.13 2.12 8.04 -52.48 -0.42 1.70 16 LS Contribution 310.86 15.07 4.68 4.68 Total: -1.00 -31.47 310.86 -10.42 -41.89 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.16 Total: 5.84 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -3.19 Total: -23.34 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.69 Total: -41.65 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: -2.18 SS G_CDS: -2.43 Total: -4.60 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.47 -10.42 -41.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260309553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.665 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds