Wall clock time and date at job start Mon Mar 30 2020 06:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 110.96505 * 2 1 4 4 C 1.54140 * 111.13423 * 124.15699 * 2 1 3 5 5 C 1.50879 * 110.50250 * 146.28597 * 4 2 1 6 6 C 1.39602 * 126.83264 * 159.78667 * 5 4 2 7 7 C 1.37702 * 121.05534 * 179.40206 * 6 5 4 8 8 C 1.38325 * 120.54099 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.35146 * 180.10733 * 8 7 6 10 10 H 1.09008 * 109.46977 * 199.99578 * 9 8 7 11 11 N 1.46904 * 109.46837 * 319.98835 * 9 8 7 12 12 C 1.52997 * 109.47721 * 79.99428 * 9 8 7 13 13 C 1.50701 * 109.47212 * 174.99887 * 12 9 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 9 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 9 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.38018 * 119.29408 * 0.36717 * 8 7 6 22 22 C 1.38830 * 120.16067 * 359.47989 * 21 8 7 23 23 S 1.77438 * 130.56668 * 179.88830 * 22 21 8 24 24 H 1.09008 * 109.46878 * 182.67360 * 1 2 3 25 25 H 1.08995 * 109.47045 * 302.67343 * 1 2 3 26 26 H 1.08999 * 109.47058 * 62.67906 * 1 2 3 27 27 H 1.08996 * 109.28405 * 26.00217 * 4 2 1 28 28 H 1.09004 * 109.28420 * 266.56075 * 4 2 1 29 29 H 1.07997 * 119.47558 * 359.37139 * 6 5 4 30 30 H 1.07994 * 119.72938 * 179.97438 * 7 6 5 31 31 H 1.00898 * 111.00551 * 296.05373 * 11 9 8 32 32 H 1.00898 * 110.99372 * 60.01160 * 11 9 8 33 33 H 1.09002 * 109.47153 * 54.99889 * 12 9 8 34 34 H 1.09001 * 109.46832 * 295.00079 * 12 9 8 35 35 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 36 36 H 1.08006 * 119.92415 * 179.73038 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9200 1.0178 0.0000 4 6 2.0858 -0.8072 1.1897 5 6 3.3728 -1.4951 0.8064 6 6 4.3557 -1.9750 1.6739 7 6 5.4852 -2.5983 1.1924 8 6 5.6709 -2.7636 -0.1684 9 6 6.9075 -3.4485 -0.6906 10 1 7.0570 -3.1805 -1.7366 11 7 8.0727 -3.0214 0.0956 12 6 6.7397 -4.9645 -0.5715 13 6 7.9218 -5.6520 -1.2050 14 1 8.7137 -5.0662 -1.6478 15 6 7.9927 -7.0289 -1.2183 16 7 7.0287 -7.7423 -0.6786 17 14 9.4582 -7.8810 -2.0028 18 1 10.5175 -8.0842 -0.9821 19 1 9.0340 -9.1970 -2.5446 20 1 9.9883 -7.0394 -3.1055 21 6 4.7140 -2.2897 -1.0430 22 6 3.5738 -1.6642 -0.5573 23 16 2.1898 -0.9596 -1.4156 24 1 -0.3633 -1.0266 0.0479 25 1 -0.3633 0.5548 0.8650 26 1 -0.3633 0.4717 -0.9130 27 1 1.3531 -1.5562 1.4902 28 1 2.2731 -0.1334 2.0258 29 1 4.2285 -1.8551 2.7396 30 1 6.2322 -2.9611 1.8827 31 1 8.2433 -2.0335 -0.0182 32 1 7.9583 -3.2588 1.0696 33 1 5.8258 -5.2701 -1.0809 34 1 6.6792 -5.2418 0.4809 35 1 7.0785 -8.7110 -0.6883 36 1 4.8507 -2.4094 -2.1076 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260309553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:37 Heat of formation + Delta-G solvation = -9.106114 kcal Electronic energy + Delta-G solvation = -16984.286102 eV Core-core repulsion = 14364.563380 eV Total energy + Delta-G solvation = -2619.722722 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72287 -37.72575 -35.71264 -34.44004 -31.98574 -31.63091 -30.22357 -27.78027 -25.75931 -24.50825 -23.16293 -22.44944 -21.07076 -18.63865 -18.08757 -17.20475 -16.73826 -16.58223 -16.33371 -15.91790 -15.56170 -14.88679 -14.64457 -14.40627 -14.29230 -14.05368 -13.47019 -13.32554 -13.17407 -12.91418 -12.77979 -12.54379 -12.39790 -12.33569 -12.20510 -11.84987 -11.52753 -11.25058 -11.03944 -10.59807 -10.53130 -9.67951 -9.42068 -8.45946 -8.13306 -6.20305 0.12319 0.29457 0.56212 1.28211 1.41975 1.43382 1.54542 2.45215 2.59529 3.19652 3.38457 3.63254 3.82465 3.89073 3.93074 3.97568 4.21671 4.33062 4.37930 4.52161 4.61734 4.69260 4.79898 4.87731 4.89996 4.94288 5.05197 5.20027 5.24526 5.31085 5.43947 5.47909 5.69276 5.84464 5.88525 6.26881 6.47051 6.79550 6.93654 7.46513 8.98558 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.036326 B = 0.004128 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.610165 B = 6781.935432 C = 7005.965303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.039 4.039 3 H 0.117 0.883 4 C -0.079 4.079 5 C -0.120 4.120 6 C -0.090 4.090 7 C -0.124 4.124 8 C -0.098 4.098 9 C 0.148 3.852 10 H 0.068 0.932 11 N -0.825 5.825 12 C 0.047 3.953 13 C -0.509 4.509 14 H 0.061 0.939 15 C -0.005 4.005 16 N -0.939 5.939 17 Si 0.963 3.037 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.266 1.266 21 C -0.103 4.103 22 C -0.092 4.092 23 S -0.200 6.200 24 H 0.064 0.936 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.154 0.846 30 H 0.132 0.868 31 H 0.341 0.659 32 H 0.340 0.660 33 H -0.014 1.014 34 H -0.005 1.005 35 H 0.260 0.740 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.859 18.342 6.104 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 H 0.135 0.865 4 C -0.117 4.117 5 C -0.125 4.125 6 C -0.109 4.109 7 C -0.144 4.144 8 C -0.102 4.102 9 C 0.036 3.964 10 H 0.086 0.914 11 N -0.354 5.354 12 C 0.010 3.990 13 C -0.547 4.547 14 H 0.080 0.920 15 C -0.202 4.202 16 N -0.581 5.581 17 Si 0.789 3.211 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.190 1.190 21 C -0.127 4.127 22 C -0.204 4.204 23 S 0.041 5.959 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.087 0.913 27 H 0.119 0.881 28 H 0.136 0.864 29 H 0.171 0.829 30 H 0.149 0.851 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.004 0.996 34 H 0.013 0.987 35 H 0.069 0.931 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.985 17.626 4.428 21.770 hybrid contribution 0.634 -0.441 0.971 1.241 sum -11.351 17.185 5.399 21.291 Atomic orbital electron populations 1.21743 0.89148 1.03710 1.04175 1.24205 1.00857 1.00704 0.90927 0.86453 1.21046 0.92397 0.99420 0.98823 1.21256 0.97675 1.01628 0.91955 1.21052 0.92111 0.97208 1.00558 1.20969 0.99067 0.99818 0.94566 1.21065 0.97763 0.96796 0.94575 1.20302 0.84598 0.94872 0.96607 0.91424 1.58732 1.40495 1.21796 1.14384 1.18914 0.95113 0.89726 0.95265 1.21500 1.05982 0.91368 1.35854 0.92040 1.25924 0.99130 0.98595 0.96530 1.70108 1.34678 1.06033 1.47266 0.85472 0.79328 0.77512 0.78835 1.19964 1.21127 1.19037 1.20374 0.92749 0.99897 0.99696 1.22098 0.97609 1.04021 0.96678 1.86198 1.27996 1.58327 1.23388 0.91728 0.87932 0.91329 0.88124 0.86444 0.82854 0.85068 0.84563 0.84564 0.99605 0.98676 0.93122 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 9.32 71.98 0.67 -0.78 16 2 C -0.04 -0.64 4.04 30.98 0.13 -0.51 16 3 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.08 -1.34 5.87 30.29 0.18 -1.17 16 5 C -0.12 -3.12 5.98 -19.32 -0.12 -3.23 16 6 C -0.09 -2.33 9.97 22.47 0.22 -2.11 16 7 C -0.12 -3.89 9.27 22.16 0.21 -3.68 16 8 C -0.10 -3.59 4.94 -19.90 -0.10 -3.69 16 9 C 0.15 6.23 2.94 44.17 0.13 6.36 16 10 H 0.07 2.94 8.02 -2.38 -0.02 2.93 16 11 N -0.82 -30.26 8.78 -171.79 -1.51 -31.77 16 12 C 0.05 2.53 4.60 29.85 0.14 2.67 16 13 C -0.51 -29.58 8.84 25.60 0.23 -29.36 16 14 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 15 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 16 N -0.94 -58.63 13.29 21.45 0.28 -58.34 16 17 Si 0.96 46.05 29.54 68.60 2.03 48.08 16 18 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 21 C -0.10 -3.73 9.69 22.36 0.22 -3.51 16 22 C -0.09 -2.90 6.48 22.57 0.15 -2.76 16 23 S -0.20 -5.36 22.56 -56.49 -1.27 -6.64 16 24 H 0.06 0.83 8.04 -2.38 -0.02 0.81 16 25 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.10 1.58 7.79 -2.39 -0.02 1.56 16 28 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 30 H 0.13 3.82 6.68 -2.91 -0.02 3.80 16 31 H 0.34 10.35 9.06 -89.70 -0.81 9.54 16 32 H 0.34 11.73 7.37 -89.70 -0.66 11.07 16 33 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 34 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 35 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.11 4.20 8.04 -2.91 -0.02 4.17 16 Total: -1.00 -70.31 310.86 1.65 -68.66 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.39 Total: 21.63 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 2.51 Total: -41.62 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -1.22 Total: -90.11 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -1.27 Total: -6.64 kcal Total: -70.31 1.65 -68.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260309553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.557 kcal (2) G-P(sol) polarization free energy of solvation -70.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds