Wall clock time and date at job start Mon Mar 30 2020 06:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 110.96614 * 2 1 4 4 C 1.54147 * 111.13289 * 124.15336 * 2 1 3 5 5 C 1.50879 * 110.49991 * 146.28328 * 4 2 1 6 6 C 1.39603 * 126.83226 * 159.78167 * 5 4 2 7 7 C 1.37692 * 121.05530 * 179.64360 * 6 5 4 8 8 C 1.38327 * 120.54409 * 359.50575 * 7 6 5 9 9 C 1.50705 * 120.35310 * 180.33275 * 8 7 6 10 10 H 1.09004 * 109.46566 * 160.23104 * 9 8 7 11 11 N 1.46893 * 109.47079 * 40.22996 * 9 8 7 12 12 C 1.52997 * 109.47063 * 280.22692 * 9 8 7 13 13 C 1.50704 * 109.46959 * 185.00087 * 12 9 8 14 14 H 1.07997 * 119.99836 * 0.02562 * 13 12 9 15 15 C 1.37882 * 119.99859 * 179.97438 * 13 12 9 16 16 N 1.31513 * 119.99978 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00093 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47321 * 89.99356 * 17 15 13 19 19 H 1.48496 * 109.46897 * 209.99694 * 17 15 13 20 20 H 1.48506 * 109.46909 * 329.99238 * 17 15 13 21 21 C 1.38024 * 119.28899 * 0.56069 * 8 7 6 22 22 C 1.38818 * 120.16389 * 359.79590 * 21 8 7 23 23 S 1.77428 * 130.57075 * 179.67959 * 22 21 8 24 24 H 1.09008 * 109.47576 * 182.67626 * 1 2 3 25 25 H 1.09006 * 109.47518 * 302.67660 * 1 2 3 26 26 H 1.09001 * 109.47505 * 62.67794 * 1 2 3 27 27 H 1.08998 * 109.27839 * 26.00637 * 4 2 1 28 28 H 1.08994 * 109.28133 * 266.55932 * 4 2 1 29 29 H 1.08002 * 119.46848 * 359.35606 * 6 5 4 30 30 H 1.07999 * 119.73025 * 179.74219 * 7 6 5 31 31 H 1.00904 * 111.00274 * 299.99419 * 11 9 8 32 32 H 1.00897 * 111.00392 * 63.95202 * 11 9 8 33 33 H 1.08998 * 109.47270 * 304.99828 * 12 9 8 34 34 H 1.08999 * 109.47501 * 65.00106 * 12 9 8 35 35 H 0.96994 * 119.99978 * 180.02562 * 16 15 13 36 36 H 1.08006 * 119.91880 * 179.77357 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9199 1.0178 0.0000 4 6 2.0857 -0.8072 1.1898 5 6 3.3726 -1.4951 0.8066 6 6 4.3556 -1.9750 1.6740 7 6 5.4874 -2.5939 1.1923 8 6 5.6708 -2.7635 -0.1682 9 6 6.9076 -3.4482 -0.6904 10 1 6.7267 -3.7999 -1.7061 11 7 7.2359 -4.5908 0.1724 12 6 8.0751 -2.4594 -0.6935 13 6 9.2791 -3.1057 -1.3289 14 1 9.2176 -4.1201 -1.6943 15 6 10.4590 -2.4016 -1.4446 16 7 11.5098 -2.9658 -1.9987 17 14 10.5652 -0.6468 -0.8132 18 1 10.9997 -0.6570 0.6068 19 1 11.5483 0.1131 -1.6263 20 1 9.2318 -0.0014 -0.9182 21 6 4.7113 -2.2946 -1.0426 22 6 3.5738 -1.6641 -0.5573 23 16 2.1898 -0.9596 -1.4154 24 1 -0.3634 -1.0266 0.0480 25 1 -0.3634 0.5548 0.8650 26 1 -0.3634 0.4717 -0.9130 27 1 1.3529 -1.5561 1.4902 28 1 2.2730 -0.1333 2.0258 29 1 4.2285 -1.8546 2.7397 30 1 6.2362 -2.9533 1.8825 31 1 7.4082 -4.2905 1.1202 32 1 6.5080 -5.2887 0.1408 33 1 7.7976 -1.5712 -1.2612 34 1 8.3137 -2.1755 0.3315 35 1 12.3399 -2.4706 -2.0797 36 1 4.8459 -2.4183 -2.1071 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260309557.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:39 Heat of formation + Delta-G solvation = 13.999762 kcal Electronic energy + Delta-G solvation = -17057.317341 eV Core-core repulsion = 14438.596565 eV Total energy + Delta-G solvation = -2618.720776 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.61717 -36.55948 -34.56043 -32.37595 -30.88739 -30.65177 -28.87003 -26.81418 -24.11492 -23.25219 -21.94246 -21.16932 -19.68485 -17.30278 -16.69188 -16.09062 -15.54690 -15.44288 -14.88022 -14.50310 -14.11944 -13.72873 -13.64923 -13.47527 -12.89478 -12.54646 -12.51611 -12.28479 -12.18482 -11.79795 -11.56648 -11.38308 -11.09196 -10.83868 -10.39401 -10.23710 -10.03107 -9.77504 -9.50805 -9.11807 -8.49045 -8.43118 -8.04235 -7.43557 -5.93448 -3.88691 1.19683 1.39067 1.51078 2.18538 3.34626 3.42463 3.45828 3.69474 4.16116 4.39649 4.52295 4.62376 4.89162 4.91666 5.13029 5.15486 5.23162 5.30138 5.37333 5.41213 5.46006 5.51230 5.60958 5.72376 5.76473 6.04003 6.13029 6.30063 6.40775 6.50333 6.73047 6.97821 7.10407 7.30028 7.77821 7.92191 8.08205 8.67835 9.18946 9.68702 11.20313 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.029782 B = 0.004624 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.929700 B = 6054.068154 C = 6277.558051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.056 4.056 3 H 0.103 0.897 4 C -0.080 4.080 5 C -0.124 4.124 6 C -0.092 4.092 7 C -0.119 4.119 8 C -0.083 4.083 9 C 0.143 3.857 10 H 0.086 0.914 11 N -0.817 5.817 12 C 0.001 3.999 13 C -0.495 4.495 14 H 0.081 0.919 15 C 0.064 3.936 16 N -0.905 5.905 17 Si 0.872 3.128 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.268 1.268 21 C -0.082 4.082 22 C -0.074 4.074 23 S -0.158 6.158 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.333 0.667 32 H 0.326 0.674 33 H 0.020 0.980 34 H 0.011 0.989 35 H 0.261 0.739 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.157 4.990 7.761 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.185 4.185 3 H 0.121 0.879 4 C -0.117 4.117 5 C -0.129 4.129 6 C -0.112 4.112 7 C -0.139 4.139 8 C -0.087 4.087 9 C 0.031 3.969 10 H 0.104 0.896 11 N -0.344 5.344 12 C -0.037 4.037 13 C -0.533 4.533 14 H 0.099 0.901 15 C -0.136 4.136 16 N -0.545 5.545 17 Si 0.700 3.300 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.193 1.193 21 C -0.106 4.106 22 C -0.187 4.187 23 S 0.083 5.917 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.137 0.863 33 H 0.038 0.962 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.831 4.869 5.991 23.156 hybrid contribution -0.091 1.407 2.103 2.532 sum -21.923 6.277 8.094 24.197 Atomic orbital electron populations 1.21702 0.91126 1.03368 1.02807 1.23979 0.99482 1.01181 0.93861 0.87858 1.20927 0.94170 0.98708 0.97928 1.20702 0.96650 1.02694 0.92885 1.20703 0.93165 0.98532 0.98799 1.20826 0.97374 1.00188 0.95514 1.21433 0.97053 0.96827 0.93431 1.20585 0.89437 0.90496 0.96408 0.89623 1.58805 1.48470 1.13136 1.13959 1.19623 0.93325 0.93914 0.96822 1.21026 0.93361 1.01510 1.37449 0.90085 1.24992 0.95864 0.97544 0.95241 1.69903 1.02047 1.37224 1.45362 0.86909 0.78015 0.86098 0.79014 1.20489 1.21474 1.19275 1.20396 0.91293 0.98724 1.00196 1.21931 0.97852 1.03680 0.95189 1.86076 1.28043 1.57443 1.20099 0.91243 0.90903 0.91497 0.89239 0.89613 0.86308 0.85691 0.85310 0.86286 0.96213 0.97049 0.92949 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 9.31 37.15 0.35 -0.55 16 2 C -0.06 -0.53 4.04 -26.13 -0.11 -0.64 16 3 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.08 -0.77 5.87 -27.20 -0.16 -0.93 16 5 C -0.12 -1.64 5.98 -103.79 -0.62 -2.26 16 6 C -0.09 -1.21 9.97 -39.27 -0.39 -1.60 16 7 C -0.12 -1.76 9.27 -39.75 -0.37 -2.13 16 8 C -0.08 -1.39 4.94 -104.67 -0.52 -1.91 16 9 C 0.14 2.76 2.94 -68.87 -0.20 2.56 16 10 H 0.09 1.72 8.02 -51.93 -0.42 1.30 16 11 N -0.82 -14.59 8.78 -5.66 -0.05 -14.64 16 12 C 0.00 0.02 3.67 -27.88 -0.10 -0.09 16 13 C -0.50 -14.13 9.39 -34.44 -0.32 -14.45 16 14 H 0.08 2.53 7.99 -52.49 -0.42 2.11 16 15 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 16 N -0.91 -28.37 13.96 55.43 0.77 -27.59 16 17 Si 0.87 22.07 27.47 -169.99 -4.67 17.40 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 21 C -0.08 -1.34 9.69 -39.45 -0.38 -1.73 16 22 C -0.07 -1.11 6.48 -39.13 -0.25 -1.37 16 23 S -0.16 -2.06 22.56 -107.50 -2.43 -4.48 16 24 H 0.07 0.48 8.04 -51.92 -0.42 0.06 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.77 7.79 -51.93 -0.40 0.36 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.13 1.70 6.69 -52.49 -0.35 1.35 16 31 H 0.33 5.50 7.38 -39.29 -0.29 5.21 16 32 H 0.33 4.92 9.06 -39.29 -0.36 4.56 16 33 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 34 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 35 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.13 2.03 8.05 -52.48 -0.42 1.61 16 LS Contribution 307.27 15.07 4.63 4.63 Total: -1.00 -32.14 307.27 -10.04 -42.18 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.12 Total: 5.81 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -3.18 Total: -23.30 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.72 Total: -42.24 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Atomic # 16 Polarization: -2.06 SS G_CDS: -2.43 Total: -4.48 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.14 -10.04 -42.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260309557.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.183 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds