Wall clock time and date at job start Mon Mar 30 2020 06:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 110.96614 * 2 1 4 4 C 1.54147 * 111.13289 * 124.15336 * 2 1 3 5 5 C 1.50879 * 110.49991 * 146.28328 * 4 2 1 6 6 C 1.39603 * 126.83226 * 159.78167 * 5 4 2 7 7 C 1.37692 * 121.05530 * 179.64360 * 6 5 4 8 8 C 1.38327 * 120.54409 * 359.50575 * 7 6 5 9 9 C 1.50705 * 120.35310 * 180.33275 * 8 7 6 10 10 H 1.09004 * 109.46566 * 160.23104 * 9 8 7 11 11 N 1.46893 * 109.47079 * 40.22996 * 9 8 7 12 12 C 1.52997 * 109.47063 * 280.22692 * 9 8 7 13 13 C 1.50704 * 109.46959 * 185.00087 * 12 9 8 14 14 H 1.07997 * 119.99836 * 0.02562 * 13 12 9 15 15 C 1.37882 * 119.99859 * 179.97438 * 13 12 9 16 16 N 1.31513 * 119.99978 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00093 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47321 * 89.99356 * 17 15 13 19 19 H 1.48496 * 109.46897 * 209.99694 * 17 15 13 20 20 H 1.48506 * 109.46909 * 329.99238 * 17 15 13 21 21 C 1.38024 * 119.28899 * 0.56069 * 8 7 6 22 22 C 1.38818 * 120.16389 * 359.79590 * 21 8 7 23 23 S 1.77428 * 130.57075 * 179.67959 * 22 21 8 24 24 H 1.09008 * 109.47576 * 182.67626 * 1 2 3 25 25 H 1.09006 * 109.47518 * 302.67660 * 1 2 3 26 26 H 1.09001 * 109.47505 * 62.67794 * 1 2 3 27 27 H 1.08998 * 109.27839 * 26.00637 * 4 2 1 28 28 H 1.08994 * 109.28133 * 266.55932 * 4 2 1 29 29 H 1.08002 * 119.46848 * 359.35606 * 6 5 4 30 30 H 1.07999 * 119.73025 * 179.74219 * 7 6 5 31 31 H 1.00904 * 111.00274 * 299.99419 * 11 9 8 32 32 H 1.00897 * 111.00392 * 63.95202 * 11 9 8 33 33 H 1.08998 * 109.47270 * 304.99828 * 12 9 8 34 34 H 1.08999 * 109.47501 * 65.00106 * 12 9 8 35 35 H 0.96994 * 119.99978 * 180.02562 * 16 15 13 36 36 H 1.08006 * 119.91880 * 179.77357 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9199 1.0178 0.0000 4 6 2.0857 -0.8072 1.1898 5 6 3.3726 -1.4951 0.8066 6 6 4.3556 -1.9750 1.6740 7 6 5.4874 -2.5939 1.1923 8 6 5.6708 -2.7635 -0.1682 9 6 6.9076 -3.4482 -0.6904 10 1 6.7267 -3.7999 -1.7061 11 7 7.2359 -4.5908 0.1724 12 6 8.0751 -2.4594 -0.6935 13 6 9.2791 -3.1057 -1.3289 14 1 9.2176 -4.1201 -1.6943 15 6 10.4590 -2.4016 -1.4446 16 7 11.5098 -2.9658 -1.9987 17 14 10.5652 -0.6468 -0.8132 18 1 10.9997 -0.6570 0.6068 19 1 11.5483 0.1131 -1.6263 20 1 9.2318 -0.0014 -0.9182 21 6 4.7113 -2.2946 -1.0426 22 6 3.5738 -1.6641 -0.5573 23 16 2.1898 -0.9596 -1.4154 24 1 -0.3634 -1.0266 0.0480 25 1 -0.3634 0.5548 0.8650 26 1 -0.3634 0.4717 -0.9130 27 1 1.3529 -1.5561 1.4902 28 1 2.2730 -0.1333 2.0258 29 1 4.2285 -1.8546 2.7397 30 1 6.2362 -2.9533 1.8825 31 1 7.4082 -4.2905 1.1202 32 1 6.5080 -5.2887 0.1408 33 1 7.7976 -1.5712 -1.2612 34 1 8.3137 -2.1755 0.3315 35 1 12.3399 -2.4706 -2.0797 36 1 4.8459 -2.4183 -2.1071 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260309557.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:39 Heat of formation + Delta-G solvation = -6.173040 kcal Electronic energy + Delta-G solvation = -17058.192099 eV Core-core repulsion = 14438.596565 eV Total energy + Delta-G solvation = -2619.595535 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.74820 -37.77114 -35.71594 -34.44271 -32.00093 -31.67021 -30.77193 -27.83409 -25.60676 -24.45461 -23.04568 -22.38999 -21.07374 -19.02102 -18.12004 -17.32310 -16.68996 -16.54209 -16.29333 -15.82985 -15.62899 -15.03855 -14.65323 -14.55260 -14.46247 -13.99747 -13.60566 -13.45625 -13.29580 -12.99557 -12.87278 -12.47758 -12.33619 -12.18545 -11.94268 -11.85450 -11.75741 -11.32104 -11.04256 -10.72191 -10.60747 -9.69246 -9.43018 -8.46596 -8.21481 -6.21900 0.10677 0.28112 0.56138 1.27144 1.34102 1.36678 1.47508 2.38515 2.57284 3.11996 3.38161 3.61561 3.80794 3.84806 3.91123 3.96551 4.20683 4.31042 4.34654 4.50839 4.59387 4.68688 4.76805 4.81879 4.86990 4.92247 5.02161 5.13361 5.20663 5.23813 5.30632 5.36529 5.60899 5.68776 5.87480 6.33388 6.48507 6.77870 6.87003 7.39274 8.95829 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.029782 B = 0.004624 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.929700 B = 6054.068154 C = 6277.558051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.042 4.042 3 H 0.111 0.889 4 C -0.079 4.079 5 C -0.118 4.118 6 C -0.089 4.089 7 C -0.123 4.123 8 C -0.099 4.099 9 C 0.154 3.846 10 H 0.065 0.935 11 N -0.829 5.829 12 C 0.007 3.993 13 C -0.498 4.498 14 H 0.038 0.962 15 C 0.001 3.999 16 N -0.955 5.955 17 Si 0.944 3.056 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.255 1.255 21 C -0.102 4.102 22 C -0.092 4.092 23 S -0.200 6.200 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.155 0.845 30 H 0.136 0.864 31 H 0.343 0.657 32 H 0.342 0.658 33 H 0.013 0.987 34 H 0.019 0.981 35 H 0.263 0.737 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.689 7.161 10.620 27.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.170 4.170 3 H 0.129 0.871 4 C -0.116 4.116 5 C -0.123 4.123 6 C -0.108 4.108 7 C -0.143 4.143 8 C -0.103 4.103 9 C 0.042 3.958 10 H 0.083 0.917 11 N -0.359 5.359 12 C -0.031 4.031 13 C -0.537 4.537 14 H 0.057 0.943 15 C -0.195 4.195 16 N -0.597 5.597 17 Si 0.768 3.232 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.179 1.179 21 C -0.126 4.126 22 C -0.204 4.204 23 S 0.041 5.959 24 H 0.087 0.913 25 H 0.119 0.881 26 H 0.085 0.915 27 H 0.125 0.875 28 H 0.132 0.868 29 H 0.173 0.827 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.031 0.969 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -24.392 7.030 8.857 26.885 hybrid contribution 0.599 0.676 1.187 1.492 sum -23.793 7.706 10.044 26.952 Atomic orbital electron populations 1.21731 0.88959 1.03884 1.04062 1.24208 1.00985 1.00642 0.91181 0.87104 1.21043 0.92569 0.99462 0.98560 1.21269 0.97808 1.01316 0.91949 1.21060 0.92027 0.97096 1.00610 1.21002 0.98509 1.00254 0.94530 1.21010 0.96241 0.98486 0.94603 1.20124 0.89375 0.90199 0.96117 0.91722 1.58699 1.49620 1.13244 1.14355 1.19489 0.93025 0.94345 0.96212 1.21272 0.95363 0.99977 1.37061 0.94331 1.25922 0.95410 1.02508 0.95634 1.70067 1.02891 1.39401 1.47297 0.85759 0.78516 0.80095 0.78834 1.19038 1.21178 1.17921 1.20379 0.92509 0.99959 0.99723 1.22096 0.97809 1.03861 0.96658 1.86211 1.27732 1.58410 1.23518 0.91282 0.88077 0.91528 0.87510 0.86793 0.82732 0.84596 0.84281 0.84503 0.96865 0.96268 0.92807 0.86739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 9.31 71.98 0.67 -0.58 16 2 C -0.04 -0.64 4.04 30.98 0.13 -0.52 16 3 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.08 -1.17 5.87 30.29 0.18 -0.99 16 5 C -0.12 -2.75 5.98 -19.32 -0.12 -2.87 16 6 C -0.09 -2.00 9.97 22.47 0.22 -1.78 16 7 C -0.12 -3.39 9.27 22.16 0.21 -3.18 16 8 C -0.10 -3.31 4.94 -19.89 -0.10 -3.41 16 9 C 0.15 6.12 2.94 44.17 0.13 6.25 16 10 H 0.06 2.77 8.02 -2.39 -0.02 2.75 16 11 N -0.83 -29.99 8.78 -171.81 -1.51 -31.50 16 12 C 0.01 0.33 3.67 29.85 0.11 0.44 16 13 C -0.50 -29.40 9.39 25.60 0.24 -29.16 16 14 H 0.04 2.54 7.99 -2.91 -0.02 2.51 16 15 C 0.00 0.05 5.47 84.66 0.46 0.51 16 16 N -0.95 -61.64 13.96 21.45 0.30 -61.34 16 17 Si 0.94 45.76 27.47 68.60 1.88 47.65 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.26 -11.75 6.54 99.48 0.65 -11.10 16 21 C -0.10 -3.39 9.69 22.36 0.22 -3.17 16 22 C -0.09 -2.67 6.48 22.56 0.15 -2.53 16 23 S -0.20 -5.00 22.56 -56.49 -1.27 -6.28 16 24 H 0.07 0.71 8.04 -2.38 -0.02 0.69 16 25 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.11 1.30 7.79 -2.39 -0.02 1.28 16 28 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 30 H 0.14 3.37 6.69 -2.91 -0.02 3.35 16 31 H 0.34 11.11 7.38 -89.69 -0.66 10.45 16 32 H 0.34 10.39 9.06 -89.70 -0.81 9.58 16 33 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 34 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 35 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 36 H 0.11 3.93 8.05 -2.91 -0.02 3.90 16 Total: -1.00 -72.18 307.27 1.46 -70.72 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -0.44 Total: 21.73 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 2.49 Total: -40.98 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -1.21 Total: -92.83 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.88 Total: 47.65 kcal Atomic # 16 Polarization: -5.00 SS G_CDS: -1.27 Total: -6.28 kcal Total: -72.18 1.46 -70.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260309557.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.547 kcal (2) G-P(sol) polarization free energy of solvation -72.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds