Wall clock time and date at job start Mon Mar 30 2020 06:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.99889 * 2 1 4 4 C 1.54139 * 111.09680 * 235.84994 * 2 1 3 5 5 C 1.50876 * 110.51507 * 213.79045 * 4 2 1 6 6 C 1.39603 * 126.83110 * 200.21481 * 5 4 2 7 7 C 1.37696 * 121.05822 * 180.35492 * 6 5 4 8 8 C 1.38319 * 120.54391 * 0.11657 * 7 6 5 9 9 C 1.50699 * 120.35613 * 179.85772 * 8 7 6 10 10 H 1.09001 * 109.47139 * 200.00113 * 9 8 7 11 11 N 1.46904 * 109.47277 * 320.00393 * 9 8 7 12 12 C 1.53006 * 109.47053 * 79.99896 * 9 8 7 13 13 C 1.50698 * 109.47184 * 174.99865 * 12 9 8 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 9 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 9 16 16 N 1.31511 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47261 * 60.00310 * 17 15 13 20 20 H 1.48500 * 109.47454 * 300.00304 * 17 15 13 21 21 C 1.38029 * 119.29231 * 0.13513 * 8 7 6 22 22 C 1.38823 * 120.15603 * 359.42996 * 21 8 7 23 23 S 1.77439 * 130.56698 * 180.57494 * 22 21 8 24 24 H 1.09004 * 109.47369 * 184.14829 * 1 2 3 25 25 H 1.09002 * 109.47157 * 304.15056 * 1 2 3 26 26 H 1.09006 * 109.47236 * 64.15100 * 1 2 3 27 27 H 1.08997 * 109.27704 * 93.50935 * 4 2 1 28 28 H 1.08996 * 109.21316 * 334.03261 * 4 2 1 29 29 H 1.08005 * 119.46848 * 0.37858 * 6 5 4 30 30 H 1.07998 * 119.72819 * 180.09506 * 7 6 5 31 31 H 1.00898 * 110.99974 * 59.99631 * 11 9 8 32 32 H 1.00896 * 111.00022 * 183.95255 * 11 9 8 33 33 H 1.09001 * 109.47002 * 55.00461 * 12 9 8 34 34 H 1.08993 * 109.46955 * 295.00024 * 12 9 8 35 35 H 0.97001 * 119.99934 * 359.97438 * 16 15 13 36 36 H 1.08000 * 119.91971 * 179.70118 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9206 1.0176 0.0000 4 6 2.0848 -0.8073 -1.1901 5 6 3.3708 -1.4973 -0.8074 6 6 4.3530 -1.9780 -1.6752 7 6 5.4839 -2.5989 -1.1940 8 6 5.6710 -2.7626 0.1666 9 6 6.9089 -3.4456 0.6884 10 1 6.7292 -3.7964 1.7047 11 7 7.2376 -4.5888 -0.1735 12 6 8.0756 -2.4556 0.6894 13 6 9.2807 -3.1001 1.3244 14 1 9.2206 -4.1145 1.6904 15 6 10.4602 -2.3952 1.4374 16 7 10.5335 -1.1602 0.9913 17 14 11.9542 -3.1943 2.2239 18 1 13.0866 -2.2335 2.2249 19 1 12.3324 -4.4048 1.4513 20 1 11.6315 -3.5797 3.6212 21 6 4.7091 -2.2989 1.0412 22 6 3.5732 -1.6649 0.5564 23 16 2.1898 -0.9600 1.4152 24 1 -0.3634 -1.0250 0.0743 25 1 -0.3633 0.5769 0.8505 26 1 -0.3634 0.4481 -0.9249 27 1 2.2731 -0.1332 -2.0257 28 1 1.3506 -1.5551 -1.4897 29 1 4.2239 -1.8607 -2.7411 30 1 6.2309 -2.9613 -1.8848 31 1 7.4087 -4.2894 -1.1217 32 1 8.0260 -5.1019 0.1915 33 1 7.7977 -1.5671 1.2564 34 1 8.3128 -2.1728 -0.3361 35 1 9.7578 -0.7453 0.5826 36 1 4.8425 -2.4257 2.1054 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260309560.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:41 Heat of formation + Delta-G solvation = 1.061757 kcal Electronic energy + Delta-G solvation = -17026.249989 eV Core-core repulsion = 14406.968178 eV Total energy + Delta-G solvation = -2619.281810 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.45791 -36.49502 -34.67389 -32.65971 -30.74961 -30.63579 -27.82019 -26.64950 -23.97307 -23.25247 -21.97402 -21.38890 -19.82228 -17.13485 -16.95316 -16.12294 -15.44239 -15.23295 -14.90293 -13.84840 -13.74036 -13.63737 -13.51753 -13.48049 -13.12662 -12.59183 -12.43515 -12.27702 -12.02729 -11.69872 -11.60238 -11.13849 -10.86709 -10.70890 -10.67495 -10.34995 -10.13746 -10.00288 -9.44238 -8.71350 -8.50733 -8.38875 -7.82299 -7.32309 -6.44980 -4.16489 1.35142 1.53529 1.63052 2.28999 3.39123 3.40863 3.59370 3.85978 4.26896 4.47282 4.49348 4.73150 4.99221 5.02767 5.16675 5.26822 5.32226 5.37244 5.45076 5.55413 5.58886 5.62818 5.75366 5.80897 5.87661 6.16334 6.24622 6.43563 6.50808 6.58941 6.89858 7.09980 7.17278 7.30613 7.88164 7.99863 8.18850 8.34688 8.77154 9.57062 10.95160 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.036621 B = 0.004149 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.412882 B = 6747.355091 C = 6974.282036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.056 4.056 3 H 0.103 0.897 4 C -0.079 4.079 5 C -0.125 4.125 6 C -0.094 4.094 7 C -0.105 4.105 8 C -0.031 4.031 9 C 0.133 3.867 10 H 0.079 0.921 11 N -0.837 5.837 12 C -0.012 4.012 13 C -0.607 4.607 14 H 0.051 0.949 15 C 0.018 3.982 16 N -0.908 5.908 17 Si 1.069 2.931 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.287 1.287 21 C -0.086 4.086 22 C -0.074 4.074 23 S -0.161 6.161 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.328 0.672 32 H 0.349 0.651 33 H 0.011 0.989 34 H 0.009 0.991 35 H 0.269 0.731 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.647 0.778 -5.005 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.185 4.185 3 H 0.121 0.879 4 C -0.116 4.116 5 C -0.131 4.131 6 C -0.114 4.114 7 C -0.126 4.126 8 C -0.034 4.034 9 C 0.022 3.978 10 H 0.097 0.903 11 N -0.366 5.366 12 C -0.051 4.051 13 C -0.645 4.645 14 H 0.069 0.931 15 C -0.187 4.187 16 N -0.543 5.543 17 Si 0.897 3.103 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.214 1.214 21 C -0.109 4.109 22 C -0.186 4.186 23 S 0.080 5.920 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.163 0.837 33 H 0.029 0.971 34 H 0.027 0.973 35 H 0.079 0.921 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.310 0.723 -3.165 17.612 hybrid contribution -0.077 0.390 -1.727 1.772 sum -17.387 1.114 -4.892 18.096 Atomic orbital electron populations 1.21706 0.91204 1.03397 1.02719 1.23971 0.99405 1.01165 0.93936 0.87900 1.20908 0.94227 0.98646 0.97853 1.20657 0.96612 1.02953 0.92856 1.20699 0.93280 0.98696 0.98734 1.20758 0.97279 0.99056 0.95457 1.20099 0.94968 0.95207 0.93089 1.20382 0.90776 0.90694 0.95972 0.90270 1.59249 1.46630 1.25265 1.05471 1.19928 0.93216 0.95168 0.96773 1.21961 0.97262 1.01599 1.43672 0.93064 1.25855 1.01287 0.95552 0.95984 1.70783 1.33703 1.13010 1.36849 0.83542 0.75519 0.75171 0.76097 1.20771 1.21376 1.21372 1.20276 0.91425 0.99280 0.99965 1.21813 0.97766 1.03945 0.95124 1.86012 1.28312 1.57453 1.20209 0.91204 0.91576 0.90922 0.89666 0.89303 0.86377 0.85815 0.86011 0.83711 0.97061 0.97314 0.92064 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 9.27 37.16 0.34 -0.65 16 2 C -0.06 -0.58 4.04 -26.14 -0.11 -0.68 16 3 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.08 -0.84 5.87 -27.20 -0.16 -1.00 16 5 C -0.13 -1.83 5.98 -103.79 -0.62 -2.45 16 6 C -0.09 -1.38 9.97 -39.27 -0.39 -1.78 16 7 C -0.11 -1.76 9.27 -39.75 -0.37 -2.13 16 8 C -0.03 -0.58 4.95 -104.67 -0.52 -1.10 16 9 C 0.13 2.75 3.00 -68.86 -0.21 2.55 16 10 H 0.08 1.69 8.02 -51.93 -0.42 1.28 16 11 N -0.84 -15.73 9.03 -5.65 -0.05 -15.78 16 12 C -0.01 -0.31 3.91 -27.88 -0.11 -0.42 16 13 C -0.61 -16.56 8.55 -34.44 -0.29 -16.85 16 14 H 0.05 1.36 7.14 -52.48 -0.37 0.98 16 15 C 0.02 0.50 5.46 -17.82 -0.10 0.41 16 16 N -0.91 -27.54 13.65 55.43 0.76 -26.78 16 17 Si 1.07 24.83 29.90 -169.99 -5.08 19.75 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.09 -1.55 9.69 -39.44 -0.38 -1.93 16 22 C -0.07 -1.22 6.48 -39.13 -0.25 -1.47 16 23 S -0.16 -2.26 22.56 -107.50 -2.43 -4.69 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.09 0.85 7.85 -51.93 -0.41 0.45 16 29 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.12 1.95 6.69 -52.49 -0.35 1.60 16 31 H 0.33 5.81 7.37 -39.29 -0.29 5.52 16 32 H 0.35 6.72 7.90 -39.29 -0.31 6.41 16 33 H 0.01 0.30 8.01 -51.93 -0.42 -0.11 16 34 H 0.01 0.23 8.01 -51.93 -0.42 -0.19 16 35 H 0.27 8.19 7.22 -40.82 -0.29 7.90 16 36 H 0.12 2.19 8.04 -52.49 -0.42 1.77 16 LS Contribution 307.94 15.07 4.64 4.64 Total: -1.00 -30.52 307.94 -10.36 -40.88 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.03 Total: 9.50 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: -3.16 Total: -27.51 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.71 Total: -42.56 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.08 Total: 19.75 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -2.43 Total: -4.69 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.52 -10.36 -40.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260309560.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.940 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds