Wall clock time and date at job start Mon Mar 30 2020 06:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.99889 * 2 1 4 4 C 1.54139 * 111.09680 * 235.84994 * 2 1 3 5 5 C 1.50876 * 110.51507 * 213.79045 * 4 2 1 6 6 C 1.39603 * 126.83110 * 200.21481 * 5 4 2 7 7 C 1.37696 * 121.05822 * 180.35492 * 6 5 4 8 8 C 1.38319 * 120.54391 * 0.11657 * 7 6 5 9 9 C 1.50699 * 120.35613 * 179.85772 * 8 7 6 10 10 H 1.09001 * 109.47139 * 200.00113 * 9 8 7 11 11 N 1.46904 * 109.47277 * 320.00393 * 9 8 7 12 12 C 1.53006 * 109.47053 * 79.99896 * 9 8 7 13 13 C 1.50698 * 109.47184 * 174.99865 * 12 9 8 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 9 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 9 16 16 N 1.31511 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47261 * 60.00310 * 17 15 13 20 20 H 1.48500 * 109.47454 * 300.00304 * 17 15 13 21 21 C 1.38029 * 119.29231 * 0.13513 * 8 7 6 22 22 C 1.38823 * 120.15603 * 359.42996 * 21 8 7 23 23 S 1.77439 * 130.56698 * 180.57494 * 22 21 8 24 24 H 1.09004 * 109.47369 * 184.14829 * 1 2 3 25 25 H 1.09002 * 109.47157 * 304.15056 * 1 2 3 26 26 H 1.09006 * 109.47236 * 64.15100 * 1 2 3 27 27 H 1.08997 * 109.27704 * 93.50935 * 4 2 1 28 28 H 1.08996 * 109.21316 * 334.03261 * 4 2 1 29 29 H 1.08005 * 119.46848 * 0.37858 * 6 5 4 30 30 H 1.07998 * 119.72819 * 180.09506 * 7 6 5 31 31 H 1.00898 * 110.99974 * 59.99631 * 11 9 8 32 32 H 1.00896 * 111.00022 * 183.95255 * 11 9 8 33 33 H 1.09001 * 109.47002 * 55.00461 * 12 9 8 34 34 H 1.08993 * 109.46955 * 295.00024 * 12 9 8 35 35 H 0.97001 * 119.99934 * 359.97438 * 16 15 13 36 36 H 1.08000 * 119.91971 * 179.70118 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9206 1.0176 0.0000 4 6 2.0848 -0.8073 -1.1901 5 6 3.3708 -1.4973 -0.8074 6 6 4.3530 -1.9780 -1.6752 7 6 5.4839 -2.5989 -1.1940 8 6 5.6710 -2.7626 0.1666 9 6 6.9089 -3.4456 0.6884 10 1 6.7292 -3.7964 1.7047 11 7 7.2376 -4.5888 -0.1735 12 6 8.0756 -2.4556 0.6894 13 6 9.2807 -3.1001 1.3244 14 1 9.2206 -4.1145 1.6904 15 6 10.4602 -2.3952 1.4374 16 7 10.5335 -1.1602 0.9913 17 14 11.9542 -3.1943 2.2239 18 1 13.0866 -2.2335 2.2249 19 1 12.3324 -4.4048 1.4513 20 1 11.6315 -3.5797 3.6212 21 6 4.7091 -2.2989 1.0412 22 6 3.5732 -1.6649 0.5564 23 16 2.1898 -0.9600 1.4152 24 1 -0.3634 -1.0250 0.0743 25 1 -0.3633 0.5769 0.8505 26 1 -0.3634 0.4481 -0.9249 27 1 2.2731 -0.1332 -2.0257 28 1 1.3506 -1.5551 -1.4897 29 1 4.2239 -1.8607 -2.7411 30 1 6.2309 -2.9613 -1.8848 31 1 7.4087 -4.2894 -1.1217 32 1 8.0260 -5.1019 0.1915 33 1 7.7977 -1.5671 1.2564 34 1 8.3128 -2.1728 -0.3361 35 1 9.7578 -0.7453 0.5826 36 1 4.8425 -2.4257 2.1054 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260309560.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:41 Heat of formation + Delta-G solvation = -16.842822 kcal Electronic energy + Delta-G solvation = -17027.026389 eV Core-core repulsion = 14406.968178 eV Total energy + Delta-G solvation = -2620.058211 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72997 -37.89849 -35.96620 -34.57767 -32.00512 -31.76986 -29.67419 -27.83535 -25.67577 -24.55555 -23.39633 -22.53356 -21.20649 -19.08055 -18.25396 -17.45690 -16.64480 -16.33277 -16.12679 -15.72901 -15.23688 -15.04477 -14.76339 -14.65466 -14.61439 -14.18307 -13.61966 -13.31839 -13.21940 -13.00367 -12.77401 -12.59498 -12.37619 -12.27182 -12.09348 -11.95835 -11.85437 -11.09281 -10.79372 -10.61359 -10.59913 -9.83710 -9.42297 -8.73226 -8.46706 -6.45269 0.12439 0.27487 0.55063 1.25984 1.51125 1.58894 1.77722 2.52320 2.59172 3.11429 3.38102 3.58032 3.70600 3.86171 3.94485 4.04171 4.17886 4.28588 4.32583 4.48981 4.59289 4.64524 4.68980 4.80499 4.85955 4.91480 4.98841 5.05453 5.16636 5.22301 5.24243 5.34847 5.60673 5.84637 5.88870 6.11004 6.23730 6.49571 6.59030 7.37857 8.66788 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.036621 B = 0.004149 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.412882 B = 6747.355091 C = 6974.282036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.042 4.042 3 H 0.110 0.890 4 C -0.078 4.078 5 C -0.119 4.119 6 C -0.091 4.091 7 C -0.116 4.116 8 C -0.058 4.058 9 C 0.148 3.852 10 H 0.065 0.935 11 N -0.825 5.825 12 C -0.003 4.003 13 C -0.614 4.614 14 H 0.058 0.942 15 C -0.037 4.037 16 N -0.936 5.936 17 Si 1.118 2.882 18 H -0.287 1.287 19 H -0.264 1.264 20 H -0.272 1.272 21 C -0.107 4.107 22 C -0.093 4.093 23 S -0.197 6.197 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.155 0.845 30 H 0.130 0.870 31 H 0.336 0.664 32 H 0.347 0.653 33 H -0.022 1.022 34 H -0.007 1.007 35 H 0.253 0.747 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.328 0.672 -6.529 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.170 4.170 3 H 0.129 0.871 4 C -0.115 4.115 5 C -0.124 4.124 6 C -0.110 4.110 7 C -0.136 4.136 8 C -0.060 4.060 9 C 0.036 3.964 10 H 0.083 0.917 11 N -0.353 5.353 12 C -0.042 4.042 13 C -0.651 4.651 14 H 0.076 0.924 15 C -0.234 4.234 16 N -0.573 5.573 17 Si 0.939 3.061 18 H -0.212 1.212 19 H -0.189 1.189 20 H -0.197 1.197 21 C -0.131 4.131 22 C -0.205 4.205 23 S 0.044 5.956 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.120 0.880 27 H 0.132 0.868 28 H 0.126 0.874 29 H 0.173 0.827 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.160 0.840 33 H -0.003 1.003 34 H 0.011 0.989 35 H 0.062 0.938 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -19.024 0.602 -4.697 19.605 hybrid contribution 0.310 0.484 -1.280 1.403 sum -18.714 1.086 -5.977 19.676 Atomic orbital electron populations 1.21737 0.88758 1.03738 1.04374 1.24224 1.01109 1.00586 0.91107 0.87133 1.21035 0.92430 0.99452 0.98600 1.21265 0.97842 1.01463 0.91878 1.21065 0.92104 0.97212 1.00666 1.20924 0.98533 0.99602 0.94529 1.19916 0.94661 0.97082 0.94375 1.20056 0.90374 0.90046 0.95970 0.91712 1.59228 1.46346 1.24168 1.05598 1.19816 0.94592 0.94904 0.94842 1.22359 0.97960 1.01925 1.42896 0.92353 1.27427 1.04835 0.95313 0.95861 1.70924 1.33114 1.14387 1.38869 0.82917 0.71906 0.74965 0.76287 1.21249 1.18862 1.19701 1.20280 0.92709 1.00631 0.99463 1.22033 0.97793 1.03902 0.96745 1.86113 1.27586 1.58323 1.23552 0.91355 0.91285 0.87968 0.86765 0.87364 0.82691 0.85230 0.85122 0.83990 1.00323 0.98870 0.93763 0.86982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.27 71.98 0.67 -0.77 16 2 C -0.04 -0.74 4.04 30.98 0.13 -0.61 16 3 H 0.11 1.80 8.14 -2.39 -0.02 1.79 16 4 C -0.08 -1.35 5.87 30.29 0.18 -1.18 16 5 C -0.12 -3.21 5.98 -19.32 -0.12 -3.33 16 6 C -0.09 -2.47 9.97 22.47 0.22 -2.24 16 7 C -0.12 -3.84 9.27 22.16 0.21 -3.63 16 8 C -0.06 -2.25 4.95 -19.89 -0.10 -2.34 16 9 C 0.15 6.35 3.00 44.17 0.13 6.48 16 10 H 0.06 2.92 8.02 -2.39 -0.02 2.90 16 11 N -0.82 -31.30 9.03 -171.79 -1.55 -32.85 16 12 C 0.00 -0.15 3.91 29.85 0.12 -0.04 16 13 C -0.61 -34.21 8.55 25.60 0.22 -34.00 16 14 H 0.06 3.11 7.14 -2.91 -0.02 3.09 16 15 C -0.04 -2.11 5.46 84.65 0.46 -1.65 16 16 N -0.94 -58.38 13.65 21.45 0.29 -58.08 16 17 Si 1.12 49.84 29.90 68.60 2.05 51.89 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 21 C -0.11 -4.05 9.69 22.36 0.22 -3.83 16 22 C -0.09 -3.03 6.48 22.56 0.15 -2.88 16 23 S -0.20 -5.41 22.56 -56.49 -1.27 -6.68 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.11 1.56 7.85 -2.39 -0.02 1.55 16 29 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 30 H 0.13 4.02 6.69 -2.91 -0.02 4.00 16 31 H 0.34 11.92 7.37 -89.70 -0.66 11.26 16 32 H 0.35 13.39 7.90 -89.70 -0.71 12.68 16 33 H -0.02 -1.25 8.01 -2.39 -0.02 -1.27 16 34 H -0.01 -0.38 8.01 -2.39 -0.02 -0.40 16 35 H 0.25 16.14 7.22 -92.71 -0.67 15.47 16 36 H 0.11 4.30 8.04 -2.91 -0.02 4.28 16 Total: -1.00 -68.51 307.94 1.82 -66.69 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.18 Total: 29.05 kcal Atomic # 6 Polarization: -52.50 SS G_CDS: 2.48 Total: -50.02 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -1.26 Total: -90.94 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.05 Total: 51.89 kcal Atomic # 16 Polarization: -5.41 SS G_CDS: -1.27 Total: -6.68 kcal Total: -68.51 1.82 -66.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260309560.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.850 kcal (2) G-P(sol) polarization free energy of solvation -68.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds