Wall clock time and date at job start Mon Mar 30 2020 06:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.96570 * 2 1 4 4 C 1.54142 * 111.10385 * 124.13027 * 2 1 3 5 5 C 1.50877 * 110.50284 * 146.26730 * 4 2 1 6 6 C 1.39602 * 126.83070 * 159.41074 * 5 4 2 7 7 C 1.37697 * 121.04961 * 179.70446 * 6 5 4 8 8 C 1.38320 * 120.54867 * 359.94183 * 7 6 5 9 9 C 1.38022 * 119.29366 * 0.17568 * 8 7 6 10 10 C 1.50698 * 119.92481 * 179.97438 * 9 8 7 11 11 H 1.09006 * 109.47066 * 145.01720 * 10 9 8 12 12 N 1.46906 * 109.46877 * 25.02257 * 10 9 8 13 13 C 1.52999 * 109.47164 * 265.02081 * 10 9 8 14 14 C 1.50697 * 109.47060 * 184.99775 * 13 10 9 15 15 H 1.08004 * 120.00072 * 359.97438 * 14 13 10 16 16 C 1.37878 * 120.00188 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99755 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00290 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46924 * 89.99906 * 18 16 14 20 20 H 1.48499 * 109.47331 * 210.00041 * 18 16 14 21 21 H 1.48509 * 109.47286 * 330.00492 * 18 16 14 22 22 C 1.38827 * 120.15854 * 0.02562 * 9 8 7 23 23 S 1.77438 * 130.57065 * 179.32483 * 22 9 8 24 24 H 1.09002 * 109.47153 * 295.86667 * 1 2 3 25 25 H 1.09001 * 109.46832 * 175.86858 * 1 2 3 26 26 H 1.09004 * 109.47261 * 55.86839 * 1 2 3 27 27 H 1.08996 * 109.28386 * 266.55493 * 4 2 1 28 28 H 1.09002 * 109.27273 * 25.99210 * 4 2 1 29 29 H 1.07994 * 119.47108 * 359.65762 * 6 5 4 30 30 H 1.08008 * 119.72530 * 179.97438 * 7 6 5 31 31 H 1.08003 * 120.35216 * 180.19220 * 8 7 6 32 32 H 1.00900 * 110.99744 * 176.04761 * 12 10 9 33 33 H 1.00901 * 110.99508 * 299.99517 * 12 10 9 34 34 H 1.08996 * 109.47312 * 304.99589 * 13 10 9 35 35 H 1.09002 * 109.47097 * 65.00169 * 13 10 9 36 36 H 0.96996 * 119.99847 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9200 1.0179 0.0000 4 6 2.0850 -0.8068 1.1904 5 6 3.3717 -1.4956 0.8078 6 6 4.3575 -1.9691 1.6756 7 6 5.4892 -2.5886 1.1945 8 6 5.6741 -2.7570 -0.1659 9 6 4.7122 -2.2937 -1.0406 10 6 4.8994 -2.4691 -2.5256 11 1 3.9322 -2.6492 -2.9950 12 7 5.7857 -3.6138 -2.7755 13 6 5.5240 -1.2024 -3.1141 14 6 5.5982 -1.3291 -4.6139 15 1 5.2365 -2.2238 -5.0989 16 6 6.1279 -0.3029 -5.3671 17 7 6.5678 0.7868 -4.7767 18 14 6.2206 -0.4602 -7.2261 19 1 4.9731 0.0724 -7.8307 20 1 7.3842 0.3120 -7.7309 21 1 6.3779 -1.8902 -7.5947 22 6 3.5731 -1.6654 -0.5558 23 16 2.1899 -0.9603 -1.4149 24 1 -0.3633 0.4484 0.9247 25 1 -0.3633 -1.0250 -0.0740 26 1 -0.3634 0.5766 -0.8507 27 1 2.2723 -0.1327 2.0261 28 1 1.3517 -1.5553 1.4908 29 1 4.2307 -1.8469 2.7411 30 1 6.2386 -2.9464 1.8852 31 1 6.5615 -3.2461 -0.5396 32 1 5.8757 -3.7922 -3.7646 33 1 6.6894 -3.4709 -2.3502 34 1 4.9113 -0.3398 -2.8523 35 1 6.5279 -1.0711 -2.7105 36 1 6.9408 1.5086 -5.3065 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260404891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:47 Heat of formation + Delta-G solvation = 9.110045 kcal Electronic energy + Delta-G solvation = -17421.372816 eV Core-core repulsion = 14802.440005 eV Total energy + Delta-G solvation = -2618.932810 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.31830 -36.18435 -34.60234 -32.44309 -31.03713 -29.97431 -27.96556 -26.44577 -24.56591 -22.97416 -21.85062 -20.93666 -19.34711 -17.38121 -16.42749 -15.92006 -15.28393 -14.82617 -14.59055 -14.57722 -14.10298 -13.54663 -13.16563 -12.90416 -12.69422 -12.46452 -12.11733 -12.00525 -11.77913 -11.66937 -11.44274 -11.03612 -10.95854 -10.83455 -10.51521 -10.29902 -9.90060 -9.70759 -9.28118 -9.06522 -8.43231 -8.28895 -7.73069 -6.96727 -6.03369 -4.07333 1.49104 1.68103 1.91805 2.63667 3.30148 3.36531 3.39006 3.98159 4.42499 4.46364 4.69517 4.92911 5.10966 5.21677 5.30692 5.33832 5.41723 5.50842 5.56564 5.63559 5.74817 5.79478 5.89272 6.02226 6.11511 6.17095 6.42605 6.56674 6.74569 6.77624 6.96878 7.23049 7.54083 7.61186 7.89997 8.07597 8.22809 8.36242 8.98630 9.57007 11.07379 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.020371 B = 0.006326 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.164958 B = 4425.287824 C = 5315.762034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.069 4.069 3 H 0.102 0.898 4 C -0.078 4.078 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.122 4.122 8 C -0.096 4.096 9 C -0.018 4.018 10 C 0.125 3.875 11 H 0.078 0.922 12 N -0.840 5.840 13 C 0.004 3.996 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 C -0.074 4.074 23 S -0.128 6.128 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.348 0.652 33 H 0.329 0.671 34 H 0.027 0.973 35 H 0.015 0.985 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.744 -3.368 13.120 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.198 4.198 3 H 0.121 0.879 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.132 4.132 7 C -0.142 4.142 8 C -0.116 4.116 9 C -0.024 4.024 10 C 0.013 3.987 11 H 0.096 0.904 12 N -0.369 5.369 13 C -0.034 4.034 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.187 4.187 23 S 0.115 5.885 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.148 0.852 32 H 0.161 0.839 33 H 0.140 0.860 34 H 0.045 0.955 35 H 0.033 0.967 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.741 -3.665 12.233 15.476 hybrid contribution 1.323 0.921 -0.308 1.641 sum -7.418 -2.744 11.925 14.310 Atomic orbital electron populations 1.21681 0.91383 1.03244 1.02562 1.24007 0.99380 1.01608 0.94759 0.87932 1.20912 0.94120 0.98581 0.97972 1.20729 0.96429 1.01928 0.92846 1.20599 0.93769 1.00379 0.98468 1.20880 0.97500 1.00149 0.95654 1.20915 0.98960 0.99277 0.92412 1.19548 0.90835 0.95027 0.97001 1.20531 0.97389 0.92373 0.88365 0.90441 1.59294 1.16670 1.41367 1.19591 1.19740 0.95854 0.92332 0.95520 1.21123 1.40845 1.02530 0.91569 0.92623 1.24993 0.95300 0.95279 0.98534 1.69977 1.41135 1.06306 1.35490 0.86601 0.77597 0.78138 0.85712 1.20613 1.21280 1.19819 1.21787 0.97968 1.03989 0.94955 1.86396 1.26857 1.56895 1.18374 0.91228 0.91343 0.91514 0.89873 0.89397 0.86735 0.86140 0.85165 0.83875 0.85964 0.95494 0.96702 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.27 37.16 0.34 -0.94 16 2 C -0.07 -0.89 4.04 -26.14 -0.11 -1.00 16 3 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.08 -0.95 5.87 -27.20 -0.16 -1.11 16 5 C -0.11 -1.78 5.98 -103.79 -0.62 -2.40 16 6 C -0.11 -1.60 9.97 -39.27 -0.39 -1.99 16 7 C -0.12 -1.78 10.00 -39.75 -0.40 -2.17 16 8 C -0.10 -1.64 9.29 -39.63 -0.37 -2.00 16 9 C -0.02 -0.36 5.07 -104.48 -0.53 -0.89 16 10 C 0.12 2.71 2.81 -68.86 -0.19 2.52 16 11 H 0.08 1.80 7.80 -51.93 -0.40 1.39 16 12 N -0.84 -16.24 8.79 -5.65 -0.05 -16.29 16 13 C 0.00 0.11 4.60 -27.88 -0.13 -0.02 16 14 C -0.52 -14.50 8.55 -34.44 -0.29 -14.79 16 15 H 0.06 1.50 7.14 -52.48 -0.37 1.12 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 18 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.07 -1.39 6.29 -39.12 -0.25 -1.63 16 23 S -0.13 -2.28 22.01 -107.50 -2.37 -4.65 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 0.95 7.86 -51.93 -0.41 0.55 16 29 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 31 H 0.13 2.06 6.31 -52.48 -0.33 1.73 16 32 H 0.35 6.85 7.90 -39.29 -0.31 6.54 16 33 H 0.33 5.94 7.21 -39.29 -0.28 5.66 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 307.78 15.07 4.64 4.64 Total: -1.00 -31.04 307.78 -10.30 -41.35 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.05 Total: 9.19 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -3.19 Total: -24.81 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.69 Total: -42.31 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -2.37 Total: -4.65 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.04 -10.30 -41.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.456 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds