Wall clock time and date at job start Mon Mar 30 2020 06:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.96570 * 2 1 4 4 C 1.54142 * 111.10385 * 124.13027 * 2 1 3 5 5 C 1.50877 * 110.50284 * 146.26730 * 4 2 1 6 6 C 1.39602 * 126.83070 * 159.41074 * 5 4 2 7 7 C 1.37697 * 121.04961 * 179.70446 * 6 5 4 8 8 C 1.38320 * 120.54867 * 359.94183 * 7 6 5 9 9 C 1.38022 * 119.29366 * 0.17568 * 8 7 6 10 10 C 1.50698 * 119.92481 * 179.97438 * 9 8 7 11 11 H 1.09006 * 109.47066 * 145.01720 * 10 9 8 12 12 N 1.46906 * 109.46877 * 25.02257 * 10 9 8 13 13 C 1.52999 * 109.47164 * 265.02081 * 10 9 8 14 14 C 1.50697 * 109.47060 * 184.99775 * 13 10 9 15 15 H 1.08004 * 120.00072 * 359.97438 * 14 13 10 16 16 C 1.37878 * 120.00188 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99755 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00290 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46924 * 89.99906 * 18 16 14 20 20 H 1.48499 * 109.47331 * 210.00041 * 18 16 14 21 21 H 1.48509 * 109.47286 * 330.00492 * 18 16 14 22 22 C 1.38827 * 120.15854 * 0.02562 * 9 8 7 23 23 S 1.77438 * 130.57065 * 179.32483 * 22 9 8 24 24 H 1.09002 * 109.47153 * 295.86667 * 1 2 3 25 25 H 1.09001 * 109.46832 * 175.86858 * 1 2 3 26 26 H 1.09004 * 109.47261 * 55.86839 * 1 2 3 27 27 H 1.08996 * 109.28386 * 266.55493 * 4 2 1 28 28 H 1.09002 * 109.27273 * 25.99210 * 4 2 1 29 29 H 1.07994 * 119.47108 * 359.65762 * 6 5 4 30 30 H 1.08008 * 119.72530 * 179.97438 * 7 6 5 31 31 H 1.08003 * 120.35216 * 180.19220 * 8 7 6 32 32 H 1.00900 * 110.99744 * 176.04761 * 12 10 9 33 33 H 1.00901 * 110.99508 * 299.99517 * 12 10 9 34 34 H 1.08996 * 109.47312 * 304.99589 * 13 10 9 35 35 H 1.09002 * 109.47097 * 65.00169 * 13 10 9 36 36 H 0.96996 * 119.99847 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9200 1.0179 0.0000 4 6 2.0850 -0.8068 1.1904 5 6 3.3717 -1.4956 0.8078 6 6 4.3575 -1.9691 1.6756 7 6 5.4892 -2.5886 1.1945 8 6 5.6741 -2.7570 -0.1659 9 6 4.7122 -2.2937 -1.0406 10 6 4.8994 -2.4691 -2.5256 11 1 3.9322 -2.6492 -2.9950 12 7 5.7857 -3.6138 -2.7755 13 6 5.5240 -1.2024 -3.1141 14 6 5.5982 -1.3291 -4.6139 15 1 5.2365 -2.2238 -5.0989 16 6 6.1279 -0.3029 -5.3671 17 7 6.5678 0.7868 -4.7767 18 14 6.2206 -0.4602 -7.2261 19 1 4.9731 0.0724 -7.8307 20 1 7.3842 0.3120 -7.7309 21 1 6.3779 -1.8902 -7.5947 22 6 3.5731 -1.6654 -0.5558 23 16 2.1899 -0.9603 -1.4149 24 1 -0.3633 0.4484 0.9247 25 1 -0.3633 -1.0250 -0.0740 26 1 -0.3634 0.5766 -0.8507 27 1 2.2723 -0.1327 2.0261 28 1 1.3517 -1.5553 1.4908 29 1 4.2307 -1.8469 2.7411 30 1 6.2386 -2.9464 1.8852 31 1 6.5615 -3.2461 -0.5396 32 1 5.8757 -3.7922 -3.7646 33 1 6.6894 -3.4709 -2.3502 34 1 4.9113 -0.3398 -2.8523 35 1 6.5279 -1.0711 -2.7105 36 1 6.9408 1.5086 -5.3065 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260404891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:47 Heat of formation + Delta-G solvation = -9.785886 kcal Electronic energy + Delta-G solvation = -17422.192205 eV Core-core repulsion = 14802.440005 eV Total energy + Delta-G solvation = -2619.752199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.59244 -37.64947 -35.91221 -34.49862 -32.15182 -31.32132 -29.96109 -27.47480 -26.38564 -24.25812 -23.42750 -22.08323 -20.85197 -18.99090 -18.22656 -17.05457 -16.80169 -16.63316 -15.99413 -15.75094 -15.40150 -14.95443 -14.63762 -14.29448 -14.25679 -13.80366 -13.67551 -13.33071 -13.25828 -12.86551 -12.77495 -12.62161 -12.43454 -12.28640 -12.10673 -11.84824 -11.83521 -11.25724 -10.93024 -10.65532 -10.42824 -9.69219 -9.34624 -8.34636 -8.23290 -6.36176 0.26153 0.41270 0.71088 1.36262 1.37817 1.43209 1.48500 2.36325 2.73765 3.08808 3.46897 3.64330 3.80044 3.96290 4.06058 4.13433 4.27099 4.43328 4.48739 4.58307 4.68334 4.71063 4.80623 4.83237 4.94693 4.96640 5.14223 5.23608 5.31458 5.35954 5.43344 5.56310 5.65891 5.72790 6.03033 6.12799 6.32455 6.64888 6.78624 7.33052 8.87527 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.020371 B = 0.006326 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.164958 B = 4425.287824 C = 5315.762034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.048 4.048 3 H 0.101 0.899 4 C -0.075 4.075 5 C -0.116 4.116 6 C -0.105 4.105 7 C -0.116 4.116 8 C -0.110 4.110 9 C -0.057 4.057 10 C 0.143 3.857 11 H 0.054 0.946 12 N -0.826 5.826 13 C 0.021 3.979 14 C -0.537 4.537 15 H 0.061 0.939 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.964 3.036 19 H -0.277 1.277 20 H -0.281 1.281 21 H -0.259 1.259 22 C -0.098 4.098 23 S -0.219 6.219 24 H 0.105 0.895 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.136 0.864 32 H 0.345 0.655 33 H 0.337 0.663 34 H -0.012 1.012 35 H -0.012 1.012 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.286 -3.808 15.289 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.176 4.176 3 H 0.119 0.881 4 C -0.112 4.112 5 C -0.122 4.122 6 C -0.125 4.125 7 C -0.136 4.136 8 C -0.129 4.129 9 C -0.063 4.063 10 C 0.031 3.969 11 H 0.072 0.928 12 N -0.355 5.355 13 C -0.018 4.018 14 C -0.575 4.575 15 H 0.079 0.921 16 C -0.194 4.194 17 N -0.570 5.570 18 Si 0.789 3.211 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.210 4.210 23 S 0.023 5.977 24 H 0.124 0.876 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.134 0.866 28 H 0.126 0.874 29 H 0.175 0.825 30 H 0.176 0.824 31 H 0.153 0.847 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.281 -4.127 14.414 17.633 hybrid contribution 1.475 1.091 -0.873 2.032 sum -7.806 -3.036 13.541 15.922 Atomic orbital electron populations 1.21704 0.88870 1.03606 1.04147 1.24211 1.01090 1.00494 0.91798 0.88068 1.21004 0.92806 0.99332 0.98064 1.21301 0.98044 1.01290 0.91578 1.21119 0.92565 0.98383 1.00390 1.21321 0.98470 0.98981 0.94856 1.21115 0.98570 0.99579 0.93683 1.19501 0.92963 0.98014 0.95779 1.20102 0.95991 0.90539 0.90283 0.92829 1.59274 1.16944 1.39948 1.19355 1.19511 0.93792 0.93315 0.95136 1.21495 1.40503 1.02780 0.92681 0.92129 1.25936 0.94777 0.94801 1.03871 1.70117 1.42102 1.07206 1.37539 0.85460 0.77640 0.78813 0.79220 1.20250 1.20674 1.18336 1.21955 0.97710 1.04852 0.96529 1.86561 1.28294 1.58822 1.24002 0.87649 0.91330 0.91983 0.86592 0.87370 0.82476 0.82397 0.84668 0.84224 0.85035 0.99351 0.99326 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 9.27 71.98 0.67 -1.52 16 2 C -0.05 -1.17 4.04 30.98 0.13 -1.05 16 3 H 0.10 2.48 8.14 -2.39 -0.02 2.47 16 4 C -0.07 -1.58 5.87 30.29 0.18 -1.41 16 5 C -0.12 -3.43 5.98 -19.32 -0.12 -3.54 16 6 C -0.11 -2.61 9.97 22.47 0.22 -2.39 16 7 C -0.12 -3.08 10.00 22.16 0.22 -2.86 16 8 C -0.11 -3.72 9.29 22.24 0.21 -3.51 16 9 C -0.06 -2.32 5.07 -19.78 -0.10 -2.42 16 10 C 0.14 6.56 2.81 44.17 0.12 6.69 16 11 H 0.05 2.68 7.80 -2.38 -0.02 2.66 16 12 N -0.83 -33.02 8.79 -171.79 -1.51 -34.53 16 13 C 0.02 1.17 4.60 29.85 0.14 1.31 16 14 C -0.54 -30.97 8.55 25.60 0.22 -30.75 16 15 H 0.06 3.36 7.14 -2.91 -0.02 3.33 16 16 C 0.00 0.26 5.46 84.65 0.46 0.72 16 17 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 18 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 22 C -0.10 -3.75 6.29 22.57 0.14 -3.60 16 23 S -0.22 -8.20 22.01 -56.49 -1.24 -9.44 16 24 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.11 1.91 7.86 -2.39 -0.02 1.89 16 29 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 30 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 31 H 0.14 4.26 6.31 -2.91 -0.02 4.24 16 32 H 0.34 13.99 7.90 -89.69 -0.71 13.28 16 33 H 0.34 12.51 7.21 -89.69 -0.65 11.86 16 34 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 35 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 36 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -71.81 307.78 1.78 -70.03 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: -0.26 Total: 28.62 kcal Atomic # 6 Polarization: -46.83 SS G_CDS: 2.49 Total: -44.33 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -1.23 Total: -92.04 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.24 Total: -9.44 kcal Total: -71.81 1.78 -70.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.241 kcal (2) G-P(sol) polarization free energy of solvation -71.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds