Wall clock time and date at job start Mon Mar 30 2020 06:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47003 * 2 1 4 4 C 1.50697 * 109.47044 * 239.99943 * 2 1 3 5 5 C 1.38234 * 119.99873 * 195.86850 * 4 2 1 6 6 C 1.38242 * 120.00050 * 179.80778 * 5 4 2 7 7 C 1.38227 * 119.99501 * 0.39842 * 6 5 4 8 8 C 1.38232 * 120.00605 * 359.85581 * 7 6 5 9 9 C 1.38231 * 120.00288 * 16.13844 * 4 2 1 10 10 N 1.46500 * 109.47080 * 119.99983 * 2 1 3 11 11 C 1.36939 * 119.99975 * 241.46947 * 10 2 1 12 12 H 1.07999 * 119.99887 * 356.81793 * 11 10 2 13 13 C 1.38810 * 120.00244 * 177.09882 * 11 10 2 14 14 N 1.31618 * 119.99724 * 12.15935 * 13 11 10 15 15 Si 1.86794 * 120.00129 * 192.16372 * 13 11 10 16 16 H 1.48501 * 109.47581 * 89.99903 * 15 13 11 17 17 H 1.48504 * 109.47264 * 209.99687 * 15 13 11 18 18 H 1.48503 * 109.47309 * 329.99821 * 15 13 11 19 19 C 1.46491 * 120.00222 * 61.46690 * 10 2 1 20 20 C 1.53045 * 113.15554 * 95.12368 * 19 10 2 21 21 S 1.81494 * 89.86404 * 211.86859 * 20 19 10 22 22 C 1.53042 * 113.15147 * 354.69381 * 19 10 2 23 23 H 1.08998 * 109.46906 * 290.56981 * 1 2 3 24 24 H 1.08997 * 109.47029 * 50.56762 * 1 2 3 25 25 H 1.09003 * 109.46963 * 170.57091 * 1 2 3 26 26 H 1.08007 * 120.00128 * 359.97438 * 5 4 2 27 27 H 1.07992 * 119.99682 * 180.22894 * 6 5 4 28 28 H 1.08007 * 119.99844 * 179.83057 * 7 6 5 29 29 H 1.07995 * 120.00338 * 179.97438 * 8 7 6 30 30 H 1.08002 * 119.99575 * 359.97438 * 9 4 2 31 31 H 0.97002 * 120.00137 * 185.01357 * 14 13 11 32 32 H 1.09001 * 112.49822 * 224.90785 * 19 10 2 33 33 H 1.08998 * 113.14207 * 327.11267 * 20 19 10 34 34 H 1.08996 * 113.15153 * 96.59106 * 20 19 10 35 35 H 1.09002 * 113.14795 * 263.40145 * 22 19 10 36 36 H 1.08994 * 113.14935 * 32.85086 * 22 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 3.3484 -1.1278 -1.2987 6 6 3.8082 -1.7830 -2.4258 7 6 2.9540 -2.0135 -3.4878 8 6 1.6394 -1.5914 -3.4218 9 6 1.1786 -0.9397 -2.2931 10 7 2.0184 -0.6906 1.1962 11 6 2.7806 -0.0166 2.1127 12 1 3.0649 1.0089 1.9289 13 6 3.1929 -0.6534 3.2752 14 7 3.0625 -1.9578 3.3926 15 14 3.9325 0.3410 4.6728 16 1 2.8529 0.7814 5.5925 17 1 4.9049 -0.4989 5.4174 18 1 4.6277 1.5310 4.1199 19 6 1.6912 -2.1021 1.4119 20 6 2.7823 -3.0551 0.9182 21 16 1.5153 -4.2916 0.5183 22 6 0.7291 -2.6640 0.3627 23 1 -0.3633 0.3611 0.9621 24 1 -0.3633 0.6527 -0.7937 25 1 -0.3633 -1.0138 -0.1684 26 1 4.0168 -0.9444 -0.4703 27 1 4.8354 -2.1123 -2.4775 28 1 3.3139 -2.5229 -4.3696 29 1 0.9722 -1.7711 -4.2517 30 1 0.1514 -0.6101 -2.2414 31 1 3.2824 -2.3937 4.2308 32 1 1.3757 -2.3054 2.4353 33 1 3.3104 -2.6834 0.0401 34 1 3.4606 -3.3761 1.7086 35 1 -0.3112 -2.6578 0.6883 36 1 0.8604 -2.2164 -0.6224 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261136319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:56 Heat of formation + Delta-G solvation = 97.546269 kcal Electronic energy + Delta-G solvation = -18814.111965 eV Core-core repulsion = 16199.014037 eV Total energy + Delta-G solvation = -2615.097928 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.66160 -36.85776 -33.16678 -32.49755 -30.65303 -29.78230 -28.24795 -24.99948 -24.26334 -22.95039 -21.87755 -20.63945 -18.94520 -17.56369 -16.62946 -15.29020 -14.98419 -14.58335 -14.42198 -14.11329 -13.74112 -13.36534 -12.97109 -12.82378 -12.55931 -11.94456 -11.74169 -11.55268 -11.33636 -11.10852 -11.01176 -10.93255 -10.60125 -10.53321 -10.36265 -10.23295 -9.84184 -9.45771 -9.20063 -8.68149 -8.38259 -8.05172 -7.13443 -6.79961 -5.83682 -3.24967 1.80358 1.85643 2.84389 3.15914 3.33977 3.40822 3.42602 4.20485 4.42142 5.19203 5.22240 5.32330 5.39578 5.42514 5.56589 5.75909 5.88695 5.93619 5.96072 6.03275 6.11389 6.27022 6.32167 6.45294 6.52578 6.55782 6.56321 6.63162 6.81121 6.91946 6.97189 7.20682 7.29192 7.47836 7.59031 7.79264 8.14716 9.09120 9.68486 10.12072 11.17545 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.008609 C = 0.007723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.915016 B = 3251.652654 C = 3624.482587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.203 3.797 3 H 0.080 0.920 4 C -0.081 4.081 5 C -0.093 4.093 6 C -0.125 4.125 7 C -0.132 4.132 8 C -0.127 4.127 9 C -0.130 4.130 10 N -0.581 5.581 11 C -0.247 4.247 12 H 0.080 0.920 13 C -0.001 4.001 14 N -0.909 5.909 15 Si 0.907 3.093 16 H -0.288 1.288 17 H -0.292 1.292 18 H -0.282 1.282 19 C 0.232 3.768 20 C -0.059 4.059 21 S -0.391 6.391 22 C -0.112 4.112 23 H 0.061 0.939 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.132 0.868 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.256 0.744 32 H 0.131 0.869 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.584 2.192 -9.369 9.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.095 3.905 3 H 0.098 0.902 4 C -0.084 4.084 5 C -0.111 4.111 6 C -0.144 4.144 7 C -0.150 4.150 8 C -0.146 4.146 9 C -0.149 4.149 10 N -0.301 5.301 11 C -0.376 4.376 12 H 0.098 0.902 13 C -0.197 4.197 14 N -0.556 5.556 15 Si 0.737 3.263 16 H -0.215 1.215 17 H -0.218 1.218 18 H -0.207 1.207 19 C 0.123 3.877 20 C -0.208 4.208 21 S -0.167 6.167 22 C -0.260 4.260 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.150 0.850 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.139 0.861 31 H 0.067 0.933 32 H 0.149 0.851 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.687 0.675 -9.318 9.721 hybrid contribution 0.676 1.244 0.722 1.589 sum -2.011 1.919 -8.596 9.035 Atomic orbital electron populations 1.22728 0.97541 1.01898 1.01390 1.19324 0.92366 0.95141 0.83636 0.90226 1.20890 0.93725 0.97639 0.96107 1.21108 0.96060 0.96786 0.97172 1.21118 0.99428 0.99760 0.94058 1.20974 0.94181 1.01240 0.98594 1.20998 0.95752 0.99796 0.98013 1.21132 0.99777 1.00382 0.93592 1.44253 1.59213 1.06892 1.19756 1.19425 1.24933 0.95455 0.97753 0.90207 1.24777 1.00547 0.95590 0.98825 1.69905 1.54024 1.06661 1.25036 0.86202 0.78330 0.79054 0.82718 1.21537 1.21832 1.20747 1.22028 0.87465 0.81346 0.96813 1.25916 1.00965 0.90961 1.02987 1.88406 1.21244 1.14688 1.92374 1.25850 1.02688 0.91269 1.06155 0.91959 0.93450 0.91757 0.85035 0.86828 0.87068 0.86959 0.86123 0.93253 0.85148 0.89637 0.87775 0.90888 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 7.66 37.16 0.28 -2.53 16 2 C 0.20 3.72 3.00 -69.08 -0.21 3.51 16 3 H 0.08 1.45 7.77 -51.93 -0.40 1.05 16 4 C -0.08 -1.40 3.36 -104.63 -0.35 -1.75 16 5 C -0.09 -1.66 6.22 -39.58 -0.25 -1.91 16 6 C -0.13 -1.99 10.02 -39.58 -0.40 -2.38 16 7 C -0.13 -1.91 10.05 -39.59 -0.40 -2.31 16 8 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 9 C -0.13 -1.98 7.51 -39.58 -0.30 -2.28 16 10 N -0.58 -12.69 2.04 -171.27 -0.35 -13.04 16 11 C -0.25 -5.98 9.80 -15.06 -0.15 -6.13 16 12 H 0.08 1.89 7.68 -52.49 -0.40 1.48 16 13 C 0.00 -0.03 5.39 -17.43 -0.09 -0.13 16 14 N -0.91 -23.67 8.05 55.49 0.45 -23.22 16 15 Si 0.91 20.41 29.57 -169.99 -5.03 15.38 16 16 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 C 0.23 5.20 2.53 -67.89 -0.17 5.02 16 20 C -0.06 -1.33 6.94 37.18 0.26 -1.07 16 21 S -0.39 -8.48 24.80 -107.50 -2.67 -11.15 16 22 C -0.11 -2.23 4.93 37.18 0.18 -2.05 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.05 0.63 7.42 -51.93 -0.39 0.24 16 25 H 0.06 1.03 4.16 -51.93 -0.22 0.82 16 26 H 0.13 2.61 7.47 -52.48 -0.39 2.22 16 27 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.12 1.63 6.13 -52.49 -0.32 1.31 16 31 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 32 H 0.13 3.37 6.25 -51.93 -0.32 3.05 16 33 H 0.09 1.87 4.13 -51.93 -0.21 1.66 16 34 H 0.10 2.60 6.76 -51.93 -0.35 2.25 16 35 H 0.07 1.39 7.50 -51.93 -0.39 1.00 16 36 H 0.11 2.15 2.69 -51.93 -0.14 2.01 16 LS Contribution 281.85 15.07 4.25 4.25 Total: -1.00 -25.68 281.85 -9.70 -35.38 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.37 Total: 8.61 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -1.98 Total: -16.21 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.10 Total: -36.26 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -2.67 Total: -11.15 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -25.68 -9.70 -35.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.926 kcal (2) G-P(sol) polarization free energy of solvation -25.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds