Wall clock time and date at job start Mon Mar 30 2020 06:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47003 * 2 1 4 4 C 1.50697 * 109.47044 * 239.99943 * 2 1 3 5 5 C 1.38234 * 119.99873 * 195.86850 * 4 2 1 6 6 C 1.38242 * 120.00050 * 179.80778 * 5 4 2 7 7 C 1.38227 * 119.99501 * 0.39842 * 6 5 4 8 8 C 1.38232 * 120.00605 * 359.85581 * 7 6 5 9 9 C 1.38231 * 120.00288 * 16.13844 * 4 2 1 10 10 N 1.46500 * 109.47080 * 119.99983 * 2 1 3 11 11 C 1.36939 * 119.99975 * 241.46947 * 10 2 1 12 12 H 1.07999 * 119.99887 * 356.81793 * 11 10 2 13 13 C 1.38810 * 120.00244 * 177.09882 * 11 10 2 14 14 N 1.31618 * 119.99724 * 12.15935 * 13 11 10 15 15 Si 1.86794 * 120.00129 * 192.16372 * 13 11 10 16 16 H 1.48501 * 109.47581 * 89.99903 * 15 13 11 17 17 H 1.48504 * 109.47264 * 209.99687 * 15 13 11 18 18 H 1.48503 * 109.47309 * 329.99821 * 15 13 11 19 19 C 1.46491 * 120.00222 * 61.46690 * 10 2 1 20 20 C 1.53045 * 113.15554 * 95.12368 * 19 10 2 21 21 S 1.81494 * 89.86404 * 211.86859 * 20 19 10 22 22 C 1.53042 * 113.15147 * 354.69381 * 19 10 2 23 23 H 1.08998 * 109.46906 * 290.56981 * 1 2 3 24 24 H 1.08997 * 109.47029 * 50.56762 * 1 2 3 25 25 H 1.09003 * 109.46963 * 170.57091 * 1 2 3 26 26 H 1.08007 * 120.00128 * 359.97438 * 5 4 2 27 27 H 1.07992 * 119.99682 * 180.22894 * 6 5 4 28 28 H 1.08007 * 119.99844 * 179.83057 * 7 6 5 29 29 H 1.07995 * 120.00338 * 179.97438 * 8 7 6 30 30 H 1.08002 * 119.99575 * 359.97438 * 9 4 2 31 31 H 0.97002 * 120.00137 * 185.01357 * 14 13 11 32 32 H 1.09001 * 112.49822 * 224.90785 * 19 10 2 33 33 H 1.08998 * 113.14207 * 327.11267 * 20 19 10 34 34 H 1.08996 * 113.15153 * 96.59106 * 20 19 10 35 35 H 1.09002 * 113.14795 * 263.40145 * 22 19 10 36 36 H 1.08994 * 113.14935 * 32.85086 * 22 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 3.3484 -1.1278 -1.2987 6 6 3.8082 -1.7830 -2.4258 7 6 2.9540 -2.0135 -3.4878 8 6 1.6394 -1.5914 -3.4218 9 6 1.1786 -0.9397 -2.2931 10 7 2.0184 -0.6906 1.1962 11 6 2.7806 -0.0166 2.1127 12 1 3.0649 1.0089 1.9289 13 6 3.1929 -0.6534 3.2752 14 7 3.0625 -1.9578 3.3926 15 14 3.9325 0.3410 4.6728 16 1 2.8529 0.7814 5.5925 17 1 4.9049 -0.4989 5.4174 18 1 4.6277 1.5310 4.1199 19 6 1.6912 -2.1021 1.4119 20 6 2.7823 -3.0551 0.9182 21 16 1.5153 -4.2916 0.5183 22 6 0.7291 -2.6640 0.3627 23 1 -0.3633 0.3611 0.9621 24 1 -0.3633 0.6527 -0.7937 25 1 -0.3633 -1.0138 -0.1684 26 1 4.0168 -0.9444 -0.4703 27 1 4.8354 -2.1123 -2.4775 28 1 3.3139 -2.5229 -4.3696 29 1 0.9722 -1.7711 -4.2517 30 1 0.1514 -0.6101 -2.2414 31 1 3.2824 -2.3937 4.2308 32 1 1.3757 -2.3054 2.4353 33 1 3.3104 -2.6834 0.0401 34 1 3.4606 -3.3761 1.7086 35 1 -0.3112 -2.6578 0.6883 36 1 0.8604 -2.2164 -0.6224 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261136319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:55 Heat of formation + Delta-G solvation = 86.550831 kcal Electronic energy + Delta-G solvation = -18814.588763 eV Core-core repulsion = 16199.014037 eV Total energy + Delta-G solvation = -2615.574726 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.03678 -38.35860 -34.68432 -34.31926 -31.95284 -31.30163 -29.62084 -26.71530 -25.99924 -24.39854 -23.11201 -22.14831 -20.50908 -19.30715 -17.96241 -16.93350 -16.72563 -16.07769 -15.75289 -15.65894 -15.37777 -14.75131 -14.51862 -14.14676 -14.07948 -13.47108 -13.34261 -13.08147 -12.86351 -12.77367 -12.56222 -12.43901 -12.30381 -12.14492 -11.96821 -11.65683 -11.41272 -11.16468 -10.89495 -10.55521 -9.60261 -9.38283 -8.92721 -8.53189 -7.75035 -5.15026 0.59017 0.63269 1.16514 1.36701 1.51475 1.54484 1.60240 2.54301 3.01190 3.35056 3.63193 3.99217 4.11007 4.16912 4.28712 4.37322 4.40195 4.55286 4.61087 4.67375 4.75996 4.77882 4.83098 4.87802 5.03799 5.23599 5.26593 5.30261 5.39772 5.49989 5.65208 5.73962 5.76005 5.90674 5.94738 6.26707 6.30011 7.19523 7.88012 8.27934 9.23703 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.008609 C = 0.007723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.915016 B = 3251.652654 C = 3624.482587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.197 3.803 3 H 0.075 0.925 4 C -0.095 4.095 5 C -0.114 4.114 6 C -0.135 4.135 7 C -0.130 4.130 8 C -0.123 4.123 9 C -0.130 4.130 10 N -0.588 5.588 11 C -0.244 4.244 12 H 0.083 0.917 13 C -0.050 4.050 14 N -0.929 5.929 15 Si 0.960 3.040 16 H -0.291 1.291 17 H -0.304 1.304 18 H -0.274 1.274 19 C 0.235 3.765 20 C -0.053 4.053 21 S -0.400 6.400 22 C -0.091 4.091 23 H 0.049 0.951 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.099 0.901 27 H 0.123 0.877 28 H 0.140 0.860 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.246 0.754 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 2.718 -11.931 12.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.090 3.910 3 H 0.093 0.907 4 C -0.097 4.097 5 C -0.133 4.133 6 C -0.153 4.153 7 C -0.148 4.148 8 C -0.141 4.141 9 C -0.149 4.149 10 N -0.309 5.309 11 C -0.374 4.374 12 H 0.100 0.900 13 C -0.243 4.243 14 N -0.578 5.578 15 Si 0.790 3.210 16 H -0.219 1.219 17 H -0.232 1.232 18 H -0.200 1.200 19 C 0.126 3.874 20 C -0.203 4.203 21 S -0.176 6.176 22 C -0.239 4.239 23 H 0.068 0.932 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.141 0.859 28 H 0.158 0.842 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.052 1.227 -11.908 12.639 hybrid contribution 1.119 1.114 1.413 2.119 sum -2.933 2.341 -10.495 11.146 Atomic orbital electron populations 1.22612 0.95297 1.02697 1.02060 1.19530 0.93902 0.94701 0.82835 0.90712 1.20723 0.93865 0.98625 0.96468 1.20939 0.96230 0.98824 0.97277 1.21307 1.00466 0.99531 0.93955 1.21353 0.94191 1.00418 0.98799 1.21429 0.96072 0.98184 0.98426 1.21379 1.00438 0.99987 0.93068 1.44337 1.58947 1.06751 1.20836 1.19682 1.24071 0.95584 0.98034 0.89958 1.25346 1.01989 0.96279 1.00710 1.70104 1.55548 1.07547 1.24582 0.85354 0.77228 0.77920 0.80460 1.21875 1.23178 1.19950 1.21593 0.88153 0.81880 0.95752 1.25803 1.00786 0.91476 1.02257 1.88385 1.21227 1.15671 1.92332 1.25801 1.02526 0.89375 1.06196 0.93176 0.90049 0.91607 0.88310 0.85864 0.84207 0.83570 0.83836 0.94379 0.88794 0.88968 0.90949 0.89555 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.91 7.66 71.98 0.55 -4.36 16 2 C 0.20 6.97 3.00 44.25 0.13 7.11 16 3 H 0.07 2.68 7.77 -2.39 -0.02 2.66 16 4 C -0.09 -3.10 3.36 -19.87 -0.07 -3.17 16 5 C -0.11 -4.03 6.22 22.27 0.14 -3.89 16 6 C -0.13 -4.04 10.02 22.27 0.22 -3.82 16 7 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 8 C -0.12 -2.94 10.05 22.27 0.22 -2.72 16 9 C -0.13 -3.47 7.51 22.27 0.17 -3.30 16 10 N -0.59 -25.91 2.04 -695.79 -1.42 -27.33 16 11 C -0.24 -12.04 9.80 84.03 0.82 -11.21 16 12 H 0.08 3.93 7.68 -2.91 -0.02 3.91 16 13 C -0.05 -2.56 5.39 84.86 0.46 -2.10 16 14 N -0.93 -50.42 8.05 21.65 0.17 -50.24 16 15 Si 0.96 43.09 29.57 68.60 2.03 45.12 16 16 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 17 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 19 C 0.24 10.68 2.53 45.02 0.11 10.79 16 20 C -0.05 -2.47 6.94 72.00 0.50 -1.97 16 21 S -0.40 -17.15 24.80 -56.49 -1.40 -18.55 16 22 C -0.09 -3.53 4.93 72.00 0.36 -3.17 16 23 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.08 1.83 7.42 -2.39 -0.02 1.82 16 25 H 0.07 1.90 4.16 -2.39 -0.01 1.89 16 26 H 0.10 4.08 7.47 -2.91 -0.02 4.06 16 27 H 0.12 3.34 8.06 -2.91 -0.02 3.31 16 28 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 30 H 0.14 3.13 6.13 -2.91 -0.02 3.12 16 31 H 0.25 13.41 8.32 -92.71 -0.77 12.64 16 32 H 0.09 5.03 6.25 -2.39 -0.01 5.01 16 33 H 0.09 4.12 4.13 -2.39 -0.01 4.11 16 34 H 0.07 3.79 6.76 -2.39 -0.02 3.77 16 35 H 0.09 3.11 7.50 -2.39 -0.02 3.09 16 36 H 0.13 4.66 2.69 -2.39 -0.01 4.66 16 Total: -1.00 -56.34 281.85 4.31 -52.03 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 1.09 Total: 23.84 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 3.84 Total: -24.86 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -1.25 Total: -77.57 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -17.15 SS G_CDS: -1.40 Total: -18.55 kcal Total: -56.34 4.31 -52.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.577 kcal (2) G-P(sol) polarization free energy of solvation -56.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds