Wall clock time and date at job start Mon Mar 30 2020 07:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86804 * 119.99980 * 2 1 4 4 H 1.48493 * 109.47256 * 269.99768 * 3 2 1 5 5 H 1.48497 * 109.47218 * 30.00253 * 3 2 1 6 6 H 1.48506 * 109.46739 * 149.99857 * 3 2 1 7 7 C 1.40050 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99666 * 180.02562 * 7 2 1 9 9 C 1.46368 * 120.00331 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99410 * 352.13763 * 9 7 2 11 11 N 1.34770 * 120.00380 * 172.13720 * 9 7 2 12 12 C 1.46499 * 120.00180 * 184.70946 * 11 9 7 13 13 C 1.50695 * 109.47243 * 275.24948 * 12 11 9 14 14 C 1.34520 * 125.78783 * 83.75246 * 13 12 11 15 15 C 1.41380 * 106.83954 * 179.88778 * 14 13 12 16 16 C 1.34515 * 106.84170 * 0.37093 * 15 14 13 17 17 O 1.34299 * 108.41992 * 359.77129 * 16 15 14 18 18 C 1.46502 * 120.00163 * 4.71221 * 11 9 7 19 19 C 1.55239 * 110.46781 * 228.74250 * 18 11 9 20 20 C 1.54888 * 102.58434 * 203.39047 * 19 18 11 21 21 C 1.54264 * 104.31686 * 37.93070 * 20 19 18 22 22 C 1.53879 * 106.59647 * 336.32381 * 21 20 19 23 23 H 0.97000 * 120.00082 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47165 * 35.25411 * 12 11 9 25 25 H 1.09005 * 109.47083 * 155.24843 * 12 11 9 26 26 H 1.08003 * 126.57970 * 0.02562 * 14 13 12 27 27 H 1.08005 * 126.57748 * 180.15461 * 15 14 13 28 28 H 1.07998 * 125.78972 * 179.74993 * 16 15 14 29 29 H 1.09006 * 110.42806 * 351.38913 * 18 11 9 30 30 H 1.08995 * 110.89752 * 85.10176 * 19 18 11 31 31 H 1.08995 * 110.76644 * 321.62227 * 19 18 11 32 32 H 1.09004 * 110.49041 * 279.18649 * 20 19 18 33 33 H 1.08998 * 110.48711 * 156.67818 * 20 19 18 34 34 H 1.09001 * 110.03520 * 95.60473 * 21 20 19 35 35 H 1.08998 * 110.03940 * 216.99135 * 21 20 19 36 36 H 1.09000 * 110.03232 * 119.28078 * 22 21 20 37 37 H 1.08997 * 110.03363 * 240.66146 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4000 5 1 1.4382 2.6527 0.7001 6 1 3.5382 1.4401 0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0017 10 8 0.0667 -2.4855 0.1420 11 7 1.9395 -3.6421 -0.1619 12 6 1.1984 -4.9014 -0.2665 13 6 0.8987 -5.4242 1.1148 14 6 -0.1374 -5.0535 1.8885 15 6 -0.0348 -5.7900 3.0909 16 6 1.0625 -6.5606 2.9835 17 8 1.6239 -6.3348 1.7845 18 6 3.4028 -3.6454 -0.2313 19 6 3.8866 -4.4795 -1.4479 20 6 5.3249 -4.8780 -1.0334 21 6 5.2218 -5.1583 0.4800 22 6 3.9997 -4.3746 0.9900 23 1 -0.4850 0.8400 -0.0004 24 1 0.2639 -4.7298 -0.8007 25 1 1.7983 -5.6320 -0.8092 26 1 -0.9024 -4.3333 1.6381 27 1 -0.7064 -5.7406 3.9353 28 1 1.4300 -7.2445 3.7342 29 1 3.7833 -2.6256 -0.2903 30 1 3.8996 -3.8740 -2.3541 31 1 3.2642 -5.3642 -1.5821 32 1 6.0176 -4.0580 -1.2232 33 1 5.6411 -5.7744 -1.5668 34 1 5.0802 -6.2251 0.6534 35 1 6.1242 -4.8148 0.9858 36 1 3.2650 -5.0611 1.4108 37 1 4.3085 -3.6506 1.7440 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274260792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:21 Heat of formation + Delta-G solvation = -23.317290 kcal Electronic energy + Delta-G solvation = -20650.887996 eV Core-core repulsion = 17587.796160 eV Total energy + Delta-G solvation = -3063.091836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.99281 -38.64190 -36.44894 -33.50439 -32.37200 -32.34511 -30.14043 -28.30165 -26.86266 -26.68146 -24.60301 -21.15194 -20.46273 -20.23684 -19.84711 -18.93697 -16.92880 -16.76658 -15.75983 -15.51913 -14.98218 -14.80288 -14.24051 -14.05323 -13.26650 -13.12879 -12.79294 -12.57785 -12.29370 -12.08969 -11.72585 -11.49414 -11.26787 -11.11089 -11.04251 -10.85172 -10.73009 -10.65503 -10.42910 -10.25911 -10.09552 -9.64335 -9.31658 -8.87502 -8.03879 -7.52533 -7.34333 -6.22352 -4.66239 2.25433 3.12043 3.18803 3.21044 3.24072 3.51913 4.08066 4.52483 4.54514 5.04788 5.06993 5.26316 5.28676 5.49026 5.59717 5.68981 5.83659 5.88171 5.90274 5.99206 6.07062 6.07457 6.20182 6.26019 6.30510 6.39704 6.48068 6.59207 6.66267 6.69482 6.77053 6.88274 7.14682 7.44533 7.55192 7.77039 8.09958 8.29454 9.00327 9.37504 10.54114 10.72445 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.016376 B = 0.008288 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.377229 B = 3377.682737 C = 4525.673041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.089 3.911 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.072 0.928 9 C 0.560 3.440 10 O -0.570 6.570 11 N -0.626 5.626 12 C 0.201 3.799 13 C -0.016 4.016 14 C -0.188 4.188 15 C -0.214 4.214 16 C -0.065 4.065 17 O -0.180 6.180 18 C 0.147 3.853 19 C -0.139 4.139 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.148 4.148 23 H 0.268 0.732 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.153 0.847 27 H 0.139 0.861 28 H 0.193 0.807 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.296 -9.789 0.915 12.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.451 6.451 11 N -0.362 5.362 12 C 0.076 3.924 13 C -0.068 4.068 14 C -0.208 4.208 15 C -0.233 4.233 16 C -0.133 4.133 17 O -0.077 6.077 18 C 0.042 3.958 19 C -0.177 4.177 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.187 4.187 23 H 0.079 0.921 24 H 0.116 0.884 25 H 0.094 0.906 26 H 0.171 0.829 27 H 0.157 0.843 28 H 0.209 0.791 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.686 -9.778 0.871 11.878 hybrid contribution 0.353 0.848 0.453 1.024 sum 7.039 -8.930 1.324 11.447 Atomic orbital electron populations 1.69993 1.07000 1.27315 1.35273 1.25700 0.94608 1.00213 0.92580 0.86422 0.80262 0.81582 0.78849 1.19702 1.20458 1.18878 1.20968 0.93522 0.89176 1.54194 0.90959 1.18260 0.86903 0.82046 0.76144 1.90584 1.14639 1.85972 1.53947 1.48237 1.04658 1.05129 1.78177 1.19486 0.98637 0.87354 0.86902 1.23478 0.92504 0.92934 0.97857 1.21804 1.01893 1.03061 0.94053 1.21840 1.00376 1.00935 1.00191 1.23790 0.96746 1.04794 0.87973 1.83984 1.47923 1.49989 1.25817 1.21942 0.81405 1.00318 0.92136 1.22975 0.95649 1.00162 0.98963 1.22273 0.97186 1.00619 0.95860 1.22053 0.98093 0.99798 0.95746 1.22690 0.97301 0.99649 0.99017 0.92093 0.88359 0.90629 0.82934 0.84287 0.79061 0.87492 0.91354 0.91464 0.91756 0.92270 0.92450 0.92498 0.90596 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.49 11.86 55.55 0.66 -21.83 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.90 19.88 29.56 -169.99 -5.02 14.86 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.54 -14.88 8.83 -35.63 -0.31 -15.19 16 8 H 0.07 1.83 5.65 -52.49 -0.30 1.53 16 9 C 0.56 15.40 7.53 -12.99 -0.10 15.30 16 10 O -0.57 -17.50 13.78 5.19 0.07 -17.42 16 11 N -0.63 -13.87 2.47 -167.02 -0.41 -14.29 16 12 C 0.20 3.96 5.41 -5.20 -0.03 3.93 16 13 C -0.02 -0.32 5.89 -35.63 -0.21 -0.53 16 14 C -0.19 -3.89 10.38 -39.70 -0.41 -4.30 16 15 C -0.21 -3.68 10.91 -39.70 -0.43 -4.11 16 16 C -0.07 -1.01 12.09 29.42 0.36 -0.66 16 17 O -0.18 -3.22 8.81 5.72 0.05 -3.17 16 18 C 0.15 2.76 3.17 -66.08 -0.21 2.55 16 19 C -0.14 -2.12 6.39 -24.55 -0.16 -2.28 16 20 C -0.12 -1.56 6.82 -25.07 -0.17 -1.73 16 21 C -0.12 -1.62 6.80 -25.61 -0.17 -1.79 16 22 C -0.15 -2.53 6.45 -25.61 -0.17 -2.69 16 23 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 24 H 0.10 2.04 7.66 -51.93 -0.40 1.64 16 25 H 0.08 1.26 5.72 -51.93 -0.30 0.97 16 26 H 0.15 3.50 7.49 -52.48 -0.39 3.11 16 27 H 0.14 2.04 8.06 -52.48 -0.42 1.61 16 28 H 0.19 2.09 8.06 -52.49 -0.42 1.67 16 29 H 0.11 2.16 5.31 -51.93 -0.28 1.89 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.00 5.80 -51.93 -0.30 0.70 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.40 4.47 -51.93 -0.23 1.16 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 299.34 15.07 4.51 4.51 Total: -1.00 -32.32 299.34 -6.97 -39.29 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -4.71 Total: 7.22 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -2.11 Total: -9.17 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.25 Total: -36.11 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: 0.12 Total: -20.59 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.32 -6.97 -39.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274260792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.970 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds