Wall clock time and date at job start Mon Mar 30 2020 07:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86804 * 119.99980 * 2 1 4 4 H 1.48493 * 109.47256 * 269.99768 * 3 2 1 5 5 H 1.48497 * 109.47218 * 30.00253 * 3 2 1 6 6 H 1.48506 * 109.46739 * 149.99857 * 3 2 1 7 7 C 1.40050 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99666 * 180.02562 * 7 2 1 9 9 C 1.46368 * 120.00331 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99410 * 352.13763 * 9 7 2 11 11 N 1.34770 * 120.00380 * 172.13720 * 9 7 2 12 12 C 1.46499 * 120.00180 * 184.70946 * 11 9 7 13 13 C 1.50695 * 109.47243 * 275.24948 * 12 11 9 14 14 C 1.34520 * 125.78783 * 83.75246 * 13 12 11 15 15 C 1.41380 * 106.83954 * 179.88778 * 14 13 12 16 16 C 1.34515 * 106.84170 * 0.37093 * 15 14 13 17 17 O 1.34299 * 108.41992 * 359.77129 * 16 15 14 18 18 C 1.46502 * 120.00163 * 4.71221 * 11 9 7 19 19 C 1.55239 * 110.46781 * 228.74250 * 18 11 9 20 20 C 1.54888 * 102.58434 * 203.39047 * 19 18 11 21 21 C 1.54264 * 104.31686 * 37.93070 * 20 19 18 22 22 C 1.53879 * 106.59647 * 336.32381 * 21 20 19 23 23 H 0.97000 * 120.00082 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47165 * 35.25411 * 12 11 9 25 25 H 1.09005 * 109.47083 * 155.24843 * 12 11 9 26 26 H 1.08003 * 126.57970 * 0.02562 * 14 13 12 27 27 H 1.08005 * 126.57748 * 180.15461 * 15 14 13 28 28 H 1.07998 * 125.78972 * 179.74993 * 16 15 14 29 29 H 1.09006 * 110.42806 * 351.38913 * 18 11 9 30 30 H 1.08995 * 110.89752 * 85.10176 * 19 18 11 31 31 H 1.08995 * 110.76644 * 321.62227 * 19 18 11 32 32 H 1.09004 * 110.49041 * 279.18649 * 20 19 18 33 33 H 1.08998 * 110.48711 * 156.67818 * 20 19 18 34 34 H 1.09001 * 110.03520 * 95.60473 * 21 20 19 35 35 H 1.08998 * 110.03940 * 216.99135 * 21 20 19 36 36 H 1.09000 * 110.03232 * 119.28078 * 22 21 20 37 37 H 1.08997 * 110.03363 * 240.66146 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4000 5 1 1.4382 2.6527 0.7001 6 1 3.5382 1.4401 0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0017 10 8 0.0667 -2.4855 0.1420 11 7 1.9395 -3.6421 -0.1619 12 6 1.1984 -4.9014 -0.2665 13 6 0.8987 -5.4242 1.1148 14 6 -0.1374 -5.0535 1.8885 15 6 -0.0348 -5.7900 3.0909 16 6 1.0625 -6.5606 2.9835 17 8 1.6239 -6.3348 1.7845 18 6 3.4028 -3.6454 -0.2313 19 6 3.8866 -4.4795 -1.4479 20 6 5.3249 -4.8780 -1.0334 21 6 5.2218 -5.1583 0.4800 22 6 3.9997 -4.3746 0.9900 23 1 -0.4850 0.8400 -0.0004 24 1 0.2639 -4.7298 -0.8007 25 1 1.7983 -5.6320 -0.8092 26 1 -0.9024 -4.3333 1.6381 27 1 -0.7064 -5.7406 3.9353 28 1 1.4300 -7.2445 3.7342 29 1 3.7833 -2.6256 -0.2903 30 1 3.8996 -3.8740 -2.3541 31 1 3.2642 -5.3642 -1.5821 32 1 6.0176 -4.0580 -1.2232 33 1 5.6411 -5.7744 -1.5668 34 1 5.0802 -6.2251 0.6534 35 1 6.1242 -4.8148 0.9858 36 1 3.2650 -5.0611 1.4108 37 1 4.3085 -3.6506 1.7440 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274260792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:21 Heat of formation + Delta-G solvation = -43.284187 kcal Electronic energy + Delta-G solvation = -20651.753826 eV Core-core repulsion = 17587.796160 eV Total energy + Delta-G solvation = -3063.957666 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.43034 -40.27071 -38.16821 -35.26483 -34.42970 -33.79970 -31.69580 -29.53945 -28.65623 -28.19022 -26.32596 -22.58858 -22.13689 -21.68009 -21.07444 -20.61568 -18.63381 -18.20542 -17.73789 -16.99971 -16.44149 -16.33624 -15.82628 -15.65737 -14.82862 -14.72117 -14.27949 -14.13395 -13.70710 -13.67694 -13.43411 -13.17726 -12.92713 -12.80599 -12.70207 -12.22676 -12.16951 -12.03669 -11.95268 -11.86459 -11.27019 -11.15541 -10.92654 -10.78212 -9.84025 -9.35226 -9.11557 -8.28352 -6.82178 0.82917 1.37936 1.39235 1.53628 1.73041 2.09804 2.23460 2.49796 2.88396 3.57535 3.77866 3.86513 4.01467 4.10796 4.12478 4.20410 4.43682 4.56739 4.60671 4.63176 4.70275 4.78708 4.94996 4.98003 5.05872 5.12032 5.18125 5.25316 5.27872 5.31073 5.42471 5.49801 5.57938 5.63248 5.81588 6.13740 6.29986 6.36075 6.89201 7.41499 8.48124 8.67726 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.016376 B = 0.008288 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.377229 B = 3377.682737 C = 4525.673041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.032 3.968 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.251 1.251 7 C -0.568 4.568 8 H 0.088 0.912 9 C 0.545 3.455 10 O -0.617 6.617 11 N -0.625 5.625 12 C 0.202 3.798 13 C -0.027 4.027 14 C -0.219 4.219 15 C -0.233 4.233 16 C -0.037 4.037 17 O -0.177 6.177 18 C 0.135 3.865 19 C -0.133 4.133 20 C -0.112 4.112 21 C -0.110 4.110 22 C -0.145 4.145 23 H 0.273 0.727 24 H 0.075 0.925 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.162 0.838 28 H 0.248 0.752 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.490 -11.118 1.369 15.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.183 4.183 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.174 1.174 7 C -0.604 4.604 8 H 0.106 0.894 9 C 0.351 3.649 10 O -0.503 6.503 11 N -0.359 5.359 12 C 0.078 3.922 13 C -0.079 4.079 14 C -0.239 4.239 15 C -0.252 4.252 16 C -0.104 4.104 17 O -0.073 6.073 18 C 0.031 3.969 19 C -0.171 4.171 20 C -0.150 4.150 21 C -0.148 4.148 22 C -0.184 4.184 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.128 0.872 26 H 0.132 0.868 27 H 0.179 0.821 28 H 0.264 0.736 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.930 -11.154 1.313 14.991 hybrid contribution -0.673 1.160 0.368 1.391 sum 9.257 -9.994 1.680 13.726 Atomic orbital electron populations 1.70166 1.09331 1.28739 1.36765 1.26893 0.95467 1.04640 0.91331 0.85145 0.78840 0.75621 0.79539 1.18305 1.20027 1.17445 1.21465 0.94527 0.89928 1.54490 0.89387 1.18586 0.86597 0.83873 0.75849 1.90544 1.16596 1.87216 1.55894 1.48010 1.06265 1.04621 1.77033 1.19487 0.98026 0.87040 0.87600 1.23182 0.92760 0.93984 0.97941 1.21761 1.01941 1.03613 0.96617 1.22091 1.02135 1.01284 0.99712 1.24784 0.94985 1.03394 0.87211 1.83987 1.47522 1.49172 1.26652 1.22168 0.79161 1.00393 0.95157 1.22930 0.97520 0.99548 0.97134 1.22261 0.95234 1.02134 0.95355 1.22016 0.96699 0.99911 0.96196 1.22634 0.98614 0.99306 0.97844 0.91737 0.90702 0.87226 0.86764 0.82072 0.73596 0.89489 0.91448 0.90920 0.90873 0.89601 0.91117 0.90851 0.91805 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.32 11.86 21.84 0.26 -50.06 16 2 C 0.03 1.78 5.50 85.31 0.47 2.25 16 3 Si 0.99 41.32 29.56 68.60 2.03 43.35 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.57 -32.21 8.83 24.83 0.22 -32.00 16 8 H 0.09 4.54 5.65 -2.91 -0.02 4.52 16 9 C 0.55 31.55 7.53 86.36 0.65 32.20 16 10 O -0.62 -40.61 13.78 -4.33 -0.06 -40.67 16 11 N -0.63 -28.60 2.47 -800.56 -1.98 -30.57 16 12 C 0.20 8.23 5.41 85.63 0.46 8.69 16 13 C -0.03 -1.10 5.89 24.83 0.15 -0.95 16 14 C -0.22 -9.50 10.38 22.19 0.23 -9.27 16 15 C -0.23 -7.86 10.91 22.19 0.24 -7.61 16 16 C -0.04 -1.03 12.09 66.97 0.81 -0.22 16 17 O -0.18 -5.98 8.81 -2.44 -0.02 -6.00 16 18 C 0.14 5.03 3.17 46.19 0.15 5.17 16 19 C -0.13 -3.79 6.39 32.01 0.20 -3.59 16 20 C -0.11 -2.44 6.82 31.67 0.22 -2.22 16 21 C -0.11 -2.60 6.80 31.32 0.21 -2.38 16 22 C -0.15 -4.76 6.45 31.32 0.20 -4.56 16 23 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 24 H 0.07 3.35 7.66 -2.39 -0.02 3.33 16 25 H 0.11 3.60 5.72 -2.38 -0.01 3.58 16 26 H 0.11 5.81 7.49 -2.91 -0.02 5.78 16 27 H 0.16 4.54 8.06 -2.91 -0.02 4.52 16 28 H 0.25 3.99 8.06 -2.91 -0.02 3.96 16 29 H 0.09 3.55 5.31 -2.38 -0.01 3.54 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.98 5.80 -2.39 -0.01 1.97 16 32 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 2.26 4.47 -2.39 -0.01 2.24 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -75.74 299.34 5.52 -70.21 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 1.08 Total: 28.23 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 4.21 Total: -14.49 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -1.72 Total: -80.64 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -0.08 Total: -46.67 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -75.74 5.52 -70.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274260792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.930 kcal (2) G-P(sol) polarization free energy of solvation -75.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds