Wall clock time and date at job start Mon Mar 30 2020 06:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00462 * 2 1 4 4 C 1.50709 * 119.99802 * 180.02562 * 2 1 3 5 5 N 1.46502 * 109.46824 * 94.99794 * 4 2 1 6 6 C 1.40000 * 119.99414 * 179.97438 * 5 4 2 7 7 C 1.38641 * 120.10373 * 0.02562 * 6 5 4 8 8 C 1.38284 * 120.00818 * 179.97438 * 7 6 5 9 9 C 1.38275 * 120.20418 * 359.97438 * 8 7 6 10 10 C 1.38247 * 120.19312 * 0.02562 * 9 8 7 11 11 C 1.38724 * 119.99820 * 0.02562 * 10 9 8 12 12 S 1.76201 * 120.10569 * 179.97438 * 11 10 9 13 13 C 1.81406 * 102.99596 * 359.97438 * 12 11 10 14 14 C 1.50701 * 109.47044 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99746 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00074 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99904 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99958 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47040 * 90.00279 * 18 16 14 20 20 H 1.48499 * 109.46766 * 209.99903 * 18 16 14 21 21 H 1.48497 * 109.46987 * 330.00016 * 18 16 14 22 22 H 1.08002 * 120.00034 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.99484 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47282 * 269.99982 * 3 2 1 25 25 H 1.09004 * 109.47033 * 30.00191 * 3 2 1 26 26 H 1.08996 * 109.47284 * 149.99728 * 3 2 1 27 27 H 1.08999 * 109.46845 * 335.00169 * 4 2 1 28 28 H 1.08999 * 109.47083 * 214.99807 * 4 2 1 29 29 H 0.97001 * 120.00343 * 0.02562 * 5 4 2 30 30 H 1.07997 * 119.99368 * 359.95163 * 7 6 5 31 31 H 1.08004 * 119.90252 * 180.02562 * 8 7 6 32 32 H 1.07996 * 119.90390 * 179.74422 * 9 8 7 33 33 H 1.08007 * 120.00130 * 180.02562 * 10 9 8 34 34 H 1.08999 * 109.47274 * 300.00167 * 13 12 11 35 35 H 1.09004 * 109.46798 * 60.00268 * 13 12 11 36 36 H 0.96996 * 119.99847 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3052 -0.0006 5 7 2.4118 -1.6673 -1.3767 6 6 3.1198 -2.8478 -1.6320 7 6 3.4918 -3.6760 -0.5842 8 6 4.1905 -4.8418 -0.8386 9 6 4.5201 -5.1861 -2.1366 10 6 4.1533 -4.3665 -3.1878 11 6 3.4531 -3.1945 -2.9418 12 16 2.9849 -2.1474 -4.2794 13 6 3.6362 -3.0218 -5.7293 14 6 3.3118 -2.2391 -6.9755 15 1 2.7679 -1.3088 -6.9027 16 6 3.7085 -2.7109 -8.2088 17 7 3.4259 -2.0275 -9.2963 18 14 4.6473 -4.3209 -8.3349 19 1 3.6872 -5.4429 -8.4912 20 1 5.5515 -4.2756 -9.5120 21 1 5.4496 -4.5240 -7.1019 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5399 0.9354 0.0004 24 1 2.2453 1.6197 -1.0277 25 1 1.4746 2.0647 0.5139 26 1 3.0159 1.1746 0.5138 27 1 1.4385 -2.0857 0.4334 28 1 2.9742 -1.1992 0.5889 29 1 2.1526 -1.0888 -2.1109 30 1 3.2361 -3.4103 0.4309 31 1 4.4791 -5.4859 -0.0211 32 1 5.0695 -6.0957 -2.3294 33 1 4.4120 -4.6387 -4.2005 34 1 4.7173 -3.1246 -5.6363 35 1 3.1812 -4.0104 -5.7920 36 1 3.7046 -2.3597 -10.1639 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309614177.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:50 Heat of formation + Delta-G solvation = 34.390896 kcal Electronic energy + Delta-G solvation = -16695.050659 eV Core-core repulsion = 14077.214108 eV Total energy + Delta-G solvation = -2617.836550 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.11780 -36.89096 -33.96385 -33.10531 -30.83759 -29.42582 -28.99681 -27.46547 -25.71076 -22.83934 -22.51569 -21.09311 -18.89213 -17.58904 -16.77504 -16.28650 -15.95813 -15.10293 -14.65962 -14.49161 -14.14366 -13.78976 -13.44482 -13.33493 -13.24583 -13.10464 -12.79633 -12.48001 -12.12330 -11.86851 -11.64824 -11.21070 -11.02148 -10.86669 -10.39383 -10.19417 -9.92481 -9.71002 -9.40031 -9.19355 -9.14456 -8.74599 -7.56404 -6.42014 -6.23661 -4.27011 1.63739 1.86997 1.88639 2.43270 3.18919 3.26263 3.27489 3.48949 3.84743 4.11552 4.26798 4.55157 4.72687 5.07854 5.14346 5.24377 5.29890 5.42896 5.50311 5.51225 5.57945 5.67797 5.76567 5.81182 5.96560 6.18235 6.35538 6.43284 6.50643 6.59933 6.60430 6.63022 6.87547 7.08572 7.34983 7.52721 7.90959 8.22661 8.76709 9.31629 10.88152 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.020092 B = 0.005332 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.264560 B = 5250.274773 C = 6459.869599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.145 4.145 3 C -0.119 4.119 4 C 0.164 3.836 5 N -0.740 5.740 6 C 0.226 3.774 7 C -0.188 4.188 8 C -0.091 4.091 9 C -0.160 4.160 10 C -0.092 4.092 11 C -0.144 4.144 12 S -0.140 6.140 13 C 0.034 3.966 14 C -0.519 4.519 15 H 0.084 0.916 16 C 0.083 3.917 17 N -0.889 5.889 18 Si 0.876 3.124 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.264 1.264 22 H 0.100 0.900 23 H 0.101 0.899 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.406 0.594 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 -0.605 19.606 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.175 4.175 4 C 0.040 3.960 5 N -0.372 5.372 6 C 0.118 3.882 7 C -0.213 4.213 8 C -0.113 4.113 9 C -0.182 4.182 10 C -0.117 4.117 11 C -0.261 4.261 12 S 0.105 5.895 13 C -0.113 4.113 14 C -0.557 4.557 15 H 0.102 0.898 16 C -0.122 4.122 17 N -0.526 5.526 18 Si 0.702 3.298 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.189 1.189 22 H 0.118 0.882 23 H 0.120 0.880 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.242 0.758 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.141 0.859 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.004 0.543 19.496 19.606 hybrid contribution 1.066 -1.860 -0.551 2.213 sum -0.938 -1.317 18.945 19.014 Atomic orbital electron populations 1.23851 0.95182 1.02278 0.99311 1.21806 0.95523 0.95625 1.01590 1.20861 1.00009 0.94049 1.02631 1.20264 0.98099 0.93159 0.84495 1.44753 1.62056 1.23222 1.07197 1.17296 0.92373 0.87053 0.91467 1.20437 1.06663 0.97091 0.97099 1.20766 0.98099 0.96068 0.96387 1.20776 1.04269 1.00564 0.92579 1.21074 0.97672 0.93347 0.99647 1.21581 1.07467 1.01065 0.96006 1.85035 1.72685 1.33236 0.98565 1.21669 0.98507 0.97905 0.93262 1.20419 1.38536 1.09147 0.87641 0.89787 1.24825 0.95122 0.97155 0.95133 1.69857 1.45833 1.38690 0.98217 0.86829 0.80517 0.84053 0.78360 1.19729 1.20672 1.18913 0.88161 0.88021 0.91041 0.91804 0.91770 0.92080 0.92008 0.75760 0.86429 0.86627 0.86674 0.85853 0.94036 0.94509 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 13.89 29.01 0.40 -1.16 16 2 C -0.15 -1.46 5.42 -101.06 -0.55 -2.00 16 3 C -0.12 -1.07 10.03 36.00 0.36 -0.71 16 4 C 0.16 1.82 5.07 -5.19 -0.03 1.79 16 5 N -0.74 -10.73 5.68 -59.62 -0.34 -11.07 16 6 C 0.23 3.70 6.66 -83.49 -0.56 3.14 16 7 C -0.19 -2.66 9.31 -39.42 -0.37 -3.03 16 8 C -0.09 -1.25 10.04 -39.55 -0.40 -1.64 16 9 C -0.16 -2.43 10.04 -39.56 -0.40 -2.82 16 10 C -0.09 -1.66 9.36 -39.40 -0.37 -2.03 16 11 C -0.14 -2.73 6.12 -38.92 -0.24 -2.96 16 12 S -0.14 -2.99 20.37 -107.50 -2.19 -5.18 16 13 C 0.03 0.83 3.16 36.01 0.11 0.95 16 14 C -0.52 -14.65 9.68 -34.44 -0.33 -14.99 16 15 H 0.08 2.58 7.96 -52.48 -0.42 2.17 16 16 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 17 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 18 Si 0.88 20.85 27.47 -169.99 -4.67 16.18 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.26 -6.01 6.54 56.52 0.37 -5.65 16 22 H 0.10 0.91 7.99 -52.49 -0.42 0.49 16 23 H 0.10 0.82 8.04 -52.49 -0.42 0.39 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.48 8.06 -51.93 -0.42 0.07 16 26 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 27 H 0.06 0.64 7.80 -51.93 -0.41 0.23 16 28 H 0.06 0.64 7.91 -51.93 -0.41 0.23 16 29 H 0.41 6.32 7.01 -40.82 -0.29 6.03 16 30 H 0.12 1.37 6.74 -52.49 -0.35 1.02 16 31 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 32 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.12 2.31 5.88 -52.48 -0.31 2.00 16 34 H 0.04 1.00 6.81 -51.92 -0.35 0.64 16 35 H 0.04 0.87 7.17 -51.92 -0.37 0.50 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 314.49 15.07 4.74 4.74 Total: -1.00 -29.86 314.49 -9.16 -39.02 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.02 Total: 5.39 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -2.45 Total: -23.23 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.44 Total: -36.92 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.18 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -2.19 Total: -5.18 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.86 -9.16 -39.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309614177.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.408 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds