Wall clock time and date at job start Mon Mar 30 2020 06:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00462 * 2 1 4 4 C 1.50709 * 119.99802 * 180.02562 * 2 1 3 5 5 N 1.46502 * 109.46824 * 94.99794 * 4 2 1 6 6 C 1.40000 * 119.99414 * 179.97438 * 5 4 2 7 7 C 1.38641 * 120.10373 * 0.02562 * 6 5 4 8 8 C 1.38284 * 120.00818 * 179.97438 * 7 6 5 9 9 C 1.38275 * 120.20418 * 359.97438 * 8 7 6 10 10 C 1.38247 * 120.19312 * 0.02562 * 9 8 7 11 11 C 1.38724 * 119.99820 * 0.02562 * 10 9 8 12 12 S 1.76201 * 120.10569 * 179.97438 * 11 10 9 13 13 C 1.81406 * 102.99596 * 359.97438 * 12 11 10 14 14 C 1.50701 * 109.47044 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99746 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00074 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99904 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99958 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47040 * 90.00279 * 18 16 14 20 20 H 1.48499 * 109.46766 * 209.99903 * 18 16 14 21 21 H 1.48497 * 109.46987 * 330.00016 * 18 16 14 22 22 H 1.08002 * 120.00034 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.99484 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47282 * 269.99982 * 3 2 1 25 25 H 1.09004 * 109.47033 * 30.00191 * 3 2 1 26 26 H 1.08996 * 109.47284 * 149.99728 * 3 2 1 27 27 H 1.08999 * 109.46845 * 335.00169 * 4 2 1 28 28 H 1.08999 * 109.47083 * 214.99807 * 4 2 1 29 29 H 0.97001 * 120.00343 * 0.02562 * 5 4 2 30 30 H 1.07997 * 119.99368 * 359.95163 * 7 6 5 31 31 H 1.08004 * 119.90252 * 180.02562 * 8 7 6 32 32 H 1.07996 * 119.90390 * 179.74422 * 9 8 7 33 33 H 1.08007 * 120.00130 * 180.02562 * 10 9 8 34 34 H 1.08999 * 109.47274 * 300.00167 * 13 12 11 35 35 H 1.09004 * 109.46798 * 60.00268 * 13 12 11 36 36 H 0.96996 * 119.99847 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3052 -0.0006 5 7 2.4118 -1.6673 -1.3767 6 6 3.1198 -2.8478 -1.6320 7 6 3.4918 -3.6760 -0.5842 8 6 4.1905 -4.8418 -0.8386 9 6 4.5201 -5.1861 -2.1366 10 6 4.1533 -4.3665 -3.1878 11 6 3.4531 -3.1945 -2.9418 12 16 2.9849 -2.1474 -4.2794 13 6 3.6362 -3.0218 -5.7293 14 6 3.3118 -2.2391 -6.9755 15 1 2.7679 -1.3088 -6.9027 16 6 3.7085 -2.7109 -8.2088 17 7 3.4259 -2.0275 -9.2963 18 14 4.6473 -4.3209 -8.3349 19 1 3.6872 -5.4429 -8.4912 20 1 5.5515 -4.2756 -9.5120 21 1 5.4496 -4.5240 -7.1019 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5399 0.9354 0.0004 24 1 2.2453 1.6197 -1.0277 25 1 1.4746 2.0647 0.5139 26 1 3.0159 1.1746 0.5138 27 1 1.4385 -2.0857 0.4334 28 1 2.9742 -1.1992 0.5889 29 1 2.1526 -1.0888 -2.1109 30 1 3.2361 -3.4103 0.4309 31 1 4.4791 -5.4859 -0.0211 32 1 5.0695 -6.0957 -2.3294 33 1 4.4120 -4.6387 -4.2005 34 1 4.7173 -3.1246 -5.6363 35 1 3.1812 -4.0104 -5.7920 36 1 3.7046 -2.3597 -10.1639 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309614177.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:50 Heat of formation + Delta-G solvation = 17.729640 kcal Electronic energy + Delta-G solvation = -16695.773145 eV Core-core repulsion = 14077.214108 eV Total energy + Delta-G solvation = -2618.559037 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27559 -37.81198 -35.32905 -34.88484 -32.19150 -31.30864 -30.13936 -28.19600 -26.70832 -24.80707 -23.74608 -22.34078 -19.80476 -19.25941 -18.42637 -17.49343 -17.16379 -16.39722 -15.93938 -15.76245 -15.42112 -14.97642 -14.93087 -14.89143 -14.50322 -14.28253 -14.15336 -13.93052 -13.13760 -13.02365 -12.71907 -12.58205 -12.43438 -12.17256 -11.99796 -11.93762 -11.64584 -11.02197 -10.95684 -10.88780 -10.46772 -10.16300 -8.84020 -8.42295 -7.88865 -6.52814 0.40689 0.69438 0.80903 1.11937 1.31212 1.32659 1.43198 1.83998 2.25426 2.75078 2.90362 2.92105 3.75492 3.95815 3.97915 4.23785 4.46686 4.51510 4.52711 4.56355 4.59376 4.64621 4.74715 4.77056 4.83065 4.96434 5.00488 5.11070 5.23269 5.29190 5.47529 5.61079 5.69990 5.84559 5.96218 6.00771 6.42789 6.50223 6.69102 7.10329 8.73282 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.020092 B = 0.005332 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.264560 B = 5250.274773 C = 6459.869599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.159 4.159 3 C -0.118 4.118 4 C 0.162 3.838 5 N -0.744 5.744 6 C 0.221 3.779 7 C -0.186 4.186 8 C -0.075 4.075 9 C -0.165 4.165 10 C -0.110 4.110 11 C -0.175 4.175 12 S -0.164 6.164 13 C 0.042 3.958 14 C -0.533 4.533 15 H 0.040 0.960 16 C 0.026 3.974 17 N -0.935 5.935 18 Si 0.948 3.052 19 H -0.260 1.260 20 H -0.273 1.273 21 H -0.248 1.248 22 H 0.101 0.899 23 H 0.114 0.886 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.396 0.604 30 H 0.149 0.851 31 H 0.157 0.843 32 H 0.140 0.860 33 H 0.108 0.892 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 -2.629 22.586 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.174 4.174 4 C 0.039 3.961 5 N -0.374 5.374 6 C 0.112 3.888 7 C -0.210 4.210 8 C -0.096 4.096 9 C -0.187 4.187 10 C -0.135 4.135 11 C -0.292 4.292 12 S 0.079 5.921 13 C -0.106 4.106 14 C -0.572 4.572 15 H 0.059 0.941 16 C -0.175 4.175 17 N -0.574 5.574 18 Si 0.770 3.230 19 H -0.185 1.185 20 H -0.198 1.198 21 H -0.171 1.171 22 H 0.120 0.880 23 H 0.132 0.868 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.231 0.769 30 H 0.166 0.834 31 H 0.175 0.825 32 H 0.158 0.842 33 H 0.126 0.874 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.242 -1.480 22.523 22.605 hybrid contribution 0.755 -1.172 -1.313 1.915 sum -0.488 -2.652 21.210 21.380 Atomic orbital electron populations 1.24030 0.95089 1.03023 0.97963 1.21857 0.95830 0.95572 1.02656 1.20862 1.00468 0.94096 1.02024 1.20458 0.98929 0.93986 0.82733 1.44978 1.61512 1.22532 1.08360 1.17555 0.92319 0.87918 0.91035 1.20842 1.05759 0.96644 0.97765 1.21270 0.95740 0.95762 0.96832 1.21082 1.04184 1.00915 0.92488 1.21138 0.98423 0.93873 1.00027 1.21517 1.10470 1.01626 0.95551 1.84909 1.73600 1.34534 0.99105 1.21373 0.98549 0.97608 0.93062 1.20598 1.38290 1.08252 0.90022 0.94137 1.25815 0.95975 1.01290 0.94437 1.69999 1.47319 1.40982 0.99051 0.85699 0.79336 0.78877 0.79138 1.18495 1.19823 1.17141 0.88019 0.86768 0.92411 0.90317 0.91375 0.90989 0.90882 0.76874 0.83387 0.82522 0.84215 0.87401 0.93949 0.94120 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 13.89 67.78 0.94 -1.83 16 2 C -0.16 -2.95 5.42 -16.49 -0.09 -3.04 16 3 C -0.12 -1.99 10.03 71.23 0.71 -1.28 16 4 C 0.16 3.25 5.07 85.64 0.43 3.68 16 5 N -0.74 -20.82 5.68 -342.52 -1.94 -22.77 16 6 C 0.22 6.87 6.66 38.25 0.25 7.13 16 7 C -0.19 -4.56 9.31 22.38 0.21 -4.35 16 8 C -0.08 -1.70 10.04 22.29 0.22 -1.48 16 9 C -0.17 -4.48 10.04 22.28 0.22 -4.26 16 10 C -0.11 -3.86 9.36 22.39 0.21 -3.65 16 11 C -0.17 -6.55 6.12 22.70 0.14 -6.41 16 12 S -0.16 -7.28 20.37 -56.49 -1.15 -8.43 16 13 C 0.04 2.10 3.16 71.24 0.23 2.32 16 14 C -0.53 -31.50 9.68 25.60 0.25 -31.25 16 15 H 0.04 2.67 7.96 -2.91 -0.02 2.65 16 16 C 0.03 1.49 5.47 84.65 0.46 1.95 16 17 N -0.93 -57.88 13.96 21.45 0.30 -57.58 16 18 Si 0.95 43.25 27.47 68.60 1.88 45.14 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 22 H 0.10 1.68 7.99 -2.91 -0.02 1.66 16 23 H 0.11 1.63 8.04 -2.91 -0.02 1.60 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 1.07 8.06 -2.38 -0.02 1.05 16 26 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 27 H 0.07 1.29 7.80 -2.39 -0.02 1.28 16 28 H 0.07 1.31 7.91 -2.39 -0.02 1.29 16 29 H 0.40 12.47 7.01 -92.71 -0.65 11.82 16 30 H 0.15 2.71 6.74 -2.91 -0.02 2.69 16 31 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 33 H 0.11 4.02 5.88 -2.91 -0.02 4.00 16 34 H 0.04 2.07 6.81 -2.39 -0.02 2.05 16 35 H 0.04 1.96 7.17 -2.39 -0.02 1.94 16 36 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -67.28 314.49 3.65 -63.63 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.36 Total: 22.48 kcal Atomic # 6 Polarization: -46.66 SS G_CDS: 4.20 Total: -42.47 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -1.64 Total: -80.35 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.88 Total: 45.14 kcal Atomic # 16 Polarization: -7.28 SS G_CDS: -1.15 Total: -8.43 kcal Total: -67.28 3.65 -63.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309614177.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.362 kcal (2) G-P(sol) polarization free energy of solvation -67.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds