Wall clock time and date at job start Mon Mar 30 2020 07:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29414 * 119.99727 * 2 1 4 4 O 1.41599 * 119.99713 * 174.35152 * 3 2 1 5 5 C 1.47473 * 120.00410 * 179.72155 * 2 1 3 6 6 C 1.39637 * 120.18475 * 114.76916 * 5 2 1 7 7 C 1.37876 * 119.90252 * 179.74663 * 6 5 2 8 8 C 1.50697 * 119.86022 * 180.25740 * 7 6 5 9 9 C 1.38470 * 120.28092 * 0.50962 * 7 6 5 10 10 C 1.38156 * 120.37739 * 359.77027 * 9 7 6 11 11 C 1.38587 * 120.08799 * 359.97320 * 10 9 7 12 12 O 1.35772 * 120.14213 * 179.97438 * 11 10 9 13 13 C 1.42905 * 116.99574 * 0.02562 * 12 11 10 14 14 C 1.52997 * 109.46504 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46701 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00316 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00049 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99870 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00140 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46665 * 60.00116 * 19 17 15 21 21 H 1.48496 * 109.47076 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46888 * 300.00210 * 19 17 15 23 23 H 1.08996 * 109.47321 * 270.27485 * 1 2 3 24 24 H 1.08994 * 109.47306 * 30.27820 * 1 2 3 25 25 H 1.09004 * 109.47035 * 150.28005 * 1 2 3 26 26 H 0.96697 * 113.99807 * 180.02562 * 4 3 2 27 27 H 1.08001 * 120.04730 * 359.97438 * 6 5 2 28 28 H 1.09000 * 109.47389 * 270.25568 * 8 7 6 29 29 H 1.09003 * 109.47443 * 30.25376 * 8 7 6 30 30 H 1.09009 * 109.47530 * 150.25624 * 8 7 6 31 31 H 1.08004 * 119.81107 * 179.74200 * 9 7 6 32 32 H 1.07994 * 119.95266 * 179.97438 * 10 9 7 33 33 H 1.08994 * 109.47140 * 299.99974 * 13 12 11 34 34 H 1.08999 * 109.46829 * 60.00377 * 13 12 11 35 35 H 1.08994 * 109.47532 * 299.99895 * 14 13 12 36 36 H 1.08999 * 109.47139 * 60.00727 * 14 13 12 37 37 H 0.97004 * 119.99720 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1540 1.1208 0.0000 4 8 3.5648 1.1238 0.1207 5 6 2.2445 -1.2771 0.0062 6 6 3.0335 -1.6375 -1.0880 7 6 3.7246 -2.8305 -1.0739 8 6 4.5805 -3.2158 -2.2529 9 6 3.6316 -3.6784 0.0169 10 6 2.8497 -3.3360 1.1033 11 6 2.1526 -2.1383 1.1076 12 8 1.3835 -1.8009 2.1745 13 6 1.3384 -2.7284 3.2607 14 6 0.4289 -2.1798 4.3620 15 6 0.3808 -3.1582 5.5073 16 1 0.9423 -4.0792 5.4547 17 6 -0.3810 -2.8779 6.6218 18 7 -1.0659 -1.7570 6.6852 19 14 -0.4401 -4.0903 8.0418 20 1 0.9289 -4.2859 8.5828 21 1 -1.3229 -3.5579 9.1107 22 1 -0.9728 -5.3903 7.5608 23 1 -0.3634 0.0049 1.0276 24 1 -0.3633 0.8874 -0.5181 25 1 -0.3633 -0.8925 -0.5095 26 1 3.9585 2.0069 0.1111 27 1 3.1051 -0.9811 -1.9427 28 1 3.9804 -3.7764 -2.9696 29 1 4.9689 -2.3158 -2.7296 30 1 5.4112 -3.8340 -1.9123 31 1 4.1729 -4.6130 0.0182 32 1 2.7818 -4.0027 1.9502 33 1 0.9473 -3.6826 2.9077 34 1 2.3433 -2.8720 3.6578 35 1 0.8204 -1.2258 4.7149 36 1 -0.5760 -2.0359 3.9652 37 1 -1.6021 -1.5600 7.4692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309895156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:07 Heat of formation + Delta-G solvation = -25.012002 kcal Electronic energy + Delta-G solvation = -19300.938266 eV Core-core repulsion = 16237.772941 eV Total energy + Delta-G solvation = -3063.165324 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.01650 -37.57037 -36.79434 -34.24737 -33.40279 -31.71898 -30.46881 -29.90389 -28.10679 -26.33052 -24.90784 -23.27645 -21.78918 -20.47814 -19.36353 -18.02397 -16.97952 -16.13422 -15.90109 -15.55687 -15.25477 -14.55463 -14.25347 -14.17122 -13.71694 -13.64668 -13.24894 -13.13072 -12.46171 -12.43022 -12.33688 -12.25394 -12.09009 -11.60984 -11.38749 -11.21373 -10.88498 -10.82435 -10.62203 -9.86852 -9.83321 -9.67868 -9.42172 -9.31882 -8.72511 -8.46494 -7.74646 -6.12057 -4.16989 1.25209 1.58784 2.16028 3.27494 3.27774 3.32054 3.33563 3.74350 3.82749 4.39273 4.53241 4.91889 4.98441 5.24385 5.24568 5.32133 5.45169 5.54295 5.56563 5.67880 5.76292 5.80062 5.89177 5.99066 6.01397 6.06461 6.23343 6.39578 6.44150 6.62257 6.68112 6.88538 6.93937 7.46211 7.60899 7.75942 7.83326 8.00398 8.21152 8.88137 9.47467 10.99381 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.004590 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.466042 B = 6098.260431 C = 6951.913504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.200 3.800 3 N -0.341 5.341 4 O -0.408 6.408 5 C -0.134 4.134 6 C -0.047 4.047 7 C -0.142 4.142 8 C -0.103 4.103 9 C -0.068 4.068 10 C -0.210 4.210 11 C 0.166 3.834 12 O -0.310 6.310 13 C 0.064 3.936 14 C 0.027 3.973 15 C -0.528 4.528 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.899 3.101 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.275 1.275 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.395 0.605 27 H 0.121 0.879 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.122 0.878 32 H 0.134 0.866 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.547 -0.087 -16.631 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.009 3.991 3 N -0.083 5.083 4 O -0.314 6.314 5 C -0.137 4.137 6 C -0.067 4.067 7 C -0.142 4.142 8 C -0.160 4.160 9 C -0.087 4.087 10 C -0.229 4.229 11 C 0.117 3.883 12 O -0.222 6.222 13 C -0.010 4.010 14 C -0.010 4.010 15 C -0.566 4.566 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.527 5.527 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 H 0.117 0.883 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.241 0.759 27 H 0.139 0.861 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.152 0.848 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.150 0.564 -16.483 17.976 hybrid contribution 0.611 -1.050 1.036 1.597 sum 7.761 -0.486 -15.447 17.294 Atomic orbital electron populations 1.20705 0.86359 1.03363 1.04862 1.23569 0.96234 0.88192 0.91123 1.76579 0.91186 1.24251 1.16314 1.88557 1.13691 1.34235 1.94907 1.18580 1.04341 0.95816 0.94959 1.20676 0.94125 0.95620 0.96236 1.19578 1.01729 0.95704 0.97229 1.20651 0.98308 1.01491 0.95544 1.20879 0.96910 0.98567 0.92313 1.21293 1.02506 0.97907 1.01222 1.19145 0.89837 0.91806 0.87489 1.86144 1.62370 1.48076 1.25653 1.23382 1.01108 0.91323 0.85165 1.19107 0.94306 0.97393 0.90188 1.20921 1.29468 1.04883 1.01351 0.92433 1.24978 0.95135 0.95488 0.98468 1.69965 1.29521 1.23555 1.29645 0.86551 0.78107 0.81137 0.81603 1.20107 1.21090 1.20070 0.88334 0.90414 0.90015 0.75916 0.86123 0.91734 0.92017 0.91873 0.85991 0.84814 0.92923 0.93128 0.95466 0.95339 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.01 36.01 0.36 -0.90 16 2 C 0.20 3.19 6.14 -79.85 -0.49 2.70 16 3 N -0.34 -5.50 12.12 35.06 0.42 -5.07 16 4 O -0.41 -6.14 13.92 -11.47 -0.16 -6.30 16 5 C -0.13 -2.20 4.78 -104.91 -0.50 -2.70 16 6 C -0.05 -0.67 9.08 -39.19 -0.36 -1.03 16 7 C -0.14 -1.83 5.87 -104.67 -0.61 -2.45 16 8 C -0.10 -0.97 10.00 36.00 0.36 -0.61 16 9 C -0.07 -0.92 9.68 -39.53 -0.38 -1.30 16 10 C -0.21 -3.34 9.03 -39.48 -0.36 -3.70 16 11 C 0.17 2.97 6.68 -38.75 -0.26 2.71 16 12 O -0.31 -6.31 9.41 -19.03 -0.18 -6.49 16 13 C 0.06 1.36 4.68 37.16 0.17 1.53 16 14 C 0.03 0.70 5.34 -27.88 -0.15 0.56 16 15 C -0.53 -14.59 9.11 -34.44 -0.31 -14.90 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 19 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 26 H 0.39 3.90 9.28 45.56 0.42 4.32 16 27 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.06 0.53 8.08 -51.92 -0.42 0.11 16 31 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.13 2.04 6.30 -52.49 -0.33 1.71 16 33 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 34 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 323.53 15.07 4.88 4.88 Total: -1.00 -32.10 323.53 -6.41 -38.52 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -4.46 Total: 2.32 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -2.63 Total: -18.45 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 1.16 Total: -30.58 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.34 Total: -12.79 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.10 -6.41 -38.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309895156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.506 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds