Wall clock time and date at job start Mon Mar 30 2020 07:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29414 * 119.99727 * 2 1 4 4 O 1.41599 * 119.99713 * 174.35152 * 3 2 1 5 5 C 1.47473 * 120.00410 * 179.72155 * 2 1 3 6 6 C 1.39637 * 120.18475 * 114.76916 * 5 2 1 7 7 C 1.37876 * 119.90252 * 179.74663 * 6 5 2 8 8 C 1.50697 * 119.86022 * 180.25740 * 7 6 5 9 9 C 1.38470 * 120.28092 * 0.50962 * 7 6 5 10 10 C 1.38156 * 120.37739 * 359.77027 * 9 7 6 11 11 C 1.38587 * 120.08799 * 359.97320 * 10 9 7 12 12 O 1.35772 * 120.14213 * 179.97438 * 11 10 9 13 13 C 1.42905 * 116.99574 * 0.02562 * 12 11 10 14 14 C 1.52997 * 109.46504 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46701 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00316 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00049 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99870 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00140 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46665 * 60.00116 * 19 17 15 21 21 H 1.48496 * 109.47076 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46888 * 300.00210 * 19 17 15 23 23 H 1.08996 * 109.47321 * 270.27485 * 1 2 3 24 24 H 1.08994 * 109.47306 * 30.27820 * 1 2 3 25 25 H 1.09004 * 109.47035 * 150.28005 * 1 2 3 26 26 H 0.96697 * 113.99807 * 180.02562 * 4 3 2 27 27 H 1.08001 * 120.04730 * 359.97438 * 6 5 2 28 28 H 1.09000 * 109.47389 * 270.25568 * 8 7 6 29 29 H 1.09003 * 109.47443 * 30.25376 * 8 7 6 30 30 H 1.09009 * 109.47530 * 150.25624 * 8 7 6 31 31 H 1.08004 * 119.81107 * 179.74200 * 9 7 6 32 32 H 1.07994 * 119.95266 * 179.97438 * 10 9 7 33 33 H 1.08994 * 109.47140 * 299.99974 * 13 12 11 34 34 H 1.08999 * 109.46829 * 60.00377 * 13 12 11 35 35 H 1.08994 * 109.47532 * 299.99895 * 14 13 12 36 36 H 1.08999 * 109.47139 * 60.00727 * 14 13 12 37 37 H 0.97004 * 119.99720 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1540 1.1208 0.0000 4 8 3.5648 1.1238 0.1207 5 6 2.2445 -1.2771 0.0062 6 6 3.0335 -1.6375 -1.0880 7 6 3.7246 -2.8305 -1.0739 8 6 4.5805 -3.2158 -2.2529 9 6 3.6316 -3.6784 0.0169 10 6 2.8497 -3.3360 1.1033 11 6 2.1526 -2.1383 1.1076 12 8 1.3835 -1.8009 2.1745 13 6 1.3384 -2.7284 3.2607 14 6 0.4289 -2.1798 4.3620 15 6 0.3808 -3.1582 5.5073 16 1 0.9423 -4.0792 5.4547 17 6 -0.3810 -2.8779 6.6218 18 7 -1.0659 -1.7570 6.6852 19 14 -0.4401 -4.0903 8.0418 20 1 0.9289 -4.2859 8.5828 21 1 -1.3229 -3.5579 9.1107 22 1 -0.9728 -5.3903 7.5608 23 1 -0.3634 0.0049 1.0276 24 1 -0.3633 0.8874 -0.5181 25 1 -0.3633 -0.8925 -0.5095 26 1 3.9585 2.0069 0.1111 27 1 3.1051 -0.9811 -1.9427 28 1 3.9804 -3.7764 -2.9696 29 1 4.9689 -2.3158 -2.7296 30 1 5.4112 -3.8340 -1.9123 31 1 4.1729 -4.6130 0.0182 32 1 2.7818 -4.0027 1.9502 33 1 0.9473 -3.6826 2.9077 34 1 2.3433 -2.8720 3.6578 35 1 0.8204 -1.2258 4.7149 36 1 -0.5760 -2.0359 3.9652 37 1 -1.6021 -1.5600 7.4692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309895156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:06 Heat of formation + Delta-G solvation = -45.704706 kcal Electronic energy + Delta-G solvation = -19301.835569 eV Core-core repulsion = 16237.772941 eV Total energy + Delta-G solvation = -3064.062627 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.28441 -38.92709 -37.94876 -35.57792 -35.28429 -32.97582 -32.03407 -31.27614 -29.23709 -27.60862 -26.56971 -24.55968 -23.33373 -21.96126 -20.56057 -19.44843 -18.41261 -17.92256 -17.17413 -17.02325 -16.60142 -16.44285 -15.42342 -15.32890 -14.86425 -14.70513 -14.47990 -14.30207 -14.26369 -13.95584 -13.60333 -13.31702 -13.25841 -12.86969 -12.80488 -12.65498 -12.47299 -12.37484 -12.19553 -11.63199 -11.50779 -11.44033 -11.00302 -10.61309 -10.57710 -9.86847 -8.97271 -8.26308 -6.40059 0.10260 0.41653 0.96230 1.41148 1.44823 1.52795 2.17579 2.24634 2.48288 2.68033 3.08270 3.40802 3.86095 3.93054 4.12070 4.25629 4.32047 4.36417 4.46832 4.49522 4.61635 4.69005 4.71838 4.76200 4.89940 4.99876 5.10903 5.17367 5.32036 5.32894 5.33343 5.46774 5.59968 5.67736 5.84566 5.86780 6.07047 6.47940 6.74244 6.78860 7.30131 8.86434 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.004590 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.466042 B = 6098.260431 C = 6951.913504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.187 3.813 3 N -0.352 5.352 4 O -0.419 6.419 5 C -0.144 4.144 6 C -0.054 4.054 7 C -0.131 4.131 8 C -0.102 4.102 9 C -0.068 4.068 10 C -0.218 4.218 11 C 0.128 3.872 12 O -0.331 6.331 13 C 0.084 3.916 14 C 0.032 3.968 15 C -0.547 4.547 16 H 0.070 0.930 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.974 3.026 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.262 1.262 23 H 0.078 0.922 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.413 0.587 27 H 0.135 0.865 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.154 0.846 32 H 0.135 0.865 33 H 0.066 0.934 34 H 0.055 0.945 35 H -0.007 1.007 36 H 0.003 0.997 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.996 -1.925 -17.844 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.004 4.004 3 N -0.094 5.094 4 O -0.329 6.329 5 C -0.147 4.147 6 C -0.073 4.073 7 C -0.131 4.131 8 C -0.159 4.159 9 C -0.086 4.086 10 C -0.237 4.237 11 C 0.081 3.919 12 O -0.245 6.245 13 C 0.010 3.990 14 C -0.005 4.005 15 C -0.585 4.585 16 H 0.089 0.911 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.798 3.202 20 H -0.190 1.190 21 H -0.208 1.208 22 H -0.187 1.187 23 H 0.097 0.903 24 H 0.116 0.884 25 H 0.114 0.886 26 H 0.263 0.737 27 H 0.153 0.847 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.172 0.828 32 H 0.153 0.847 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.011 0.989 36 H 0.021 0.979 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.621 -1.265 -17.725 19.751 hybrid contribution 0.250 -0.418 1.271 1.361 sum 8.871 -1.683 -16.454 18.769 Atomic orbital electron populations 1.20738 0.85158 1.05116 1.04015 1.23958 0.97252 0.88232 0.90967 1.76539 0.91761 1.24459 1.16643 1.88516 1.13233 1.36301 1.94842 1.18812 1.04847 0.95786 0.95213 1.20936 0.93840 0.96547 0.95968 1.20061 1.00508 0.94547 0.98000 1.20740 0.98377 1.02441 0.94308 1.21256 0.96168 0.99802 0.91401 1.21450 1.02742 0.97196 1.02282 1.19418 0.91515 0.93615 0.87396 1.86064 1.63951 1.48145 1.26325 1.22905 1.00041 0.91446 0.84658 1.18922 0.93832 0.96015 0.91763 1.21361 1.29623 1.05519 1.02004 0.91148 1.26009 0.94493 0.97403 1.01576 1.70113 1.30399 1.25712 1.30677 0.85366 0.78520 0.78722 0.77639 1.19036 1.20809 1.18690 0.90327 0.88354 0.88630 0.73730 0.84738 0.90057 0.91141 0.90262 0.82788 0.84719 0.91607 0.92672 0.98852 0.97877 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.50 10.01 71.24 0.71 -1.79 16 2 C 0.19 6.00 6.14 45.35 0.28 6.28 16 3 N -0.35 -11.35 12.12 -42.98 -0.52 -11.87 16 4 O -0.42 -12.44 13.92 -38.78 -0.54 -12.97 16 5 C -0.14 -4.68 4.78 -20.05 -0.10 -4.78 16 6 C -0.05 -1.44 9.08 22.52 0.20 -1.23 16 7 C -0.13 -3.00 5.87 -19.90 -0.12 -3.11 16 8 C -0.10 -1.51 10.00 71.23 0.71 -0.80 16 9 C -0.07 -1.65 9.68 22.31 0.22 -1.43 16 10 C -0.22 -6.70 9.03 22.33 0.20 -6.50 16 11 C 0.13 4.61 6.68 22.81 0.15 4.76 16 12 O -0.33 -14.01 9.41 -90.99 -0.86 -14.86 16 13 C 0.08 3.65 4.68 71.98 0.34 3.98 16 14 C 0.03 1.73 5.34 29.85 0.16 1.89 16 15 C -0.55 -30.71 9.11 25.60 0.23 -30.48 16 16 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 17 C 0.00 0.22 5.46 84.65 0.46 0.69 16 18 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 19 Si 0.97 43.25 29.54 68.60 2.03 45.27 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 22 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 23 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 24 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.09 2.24 8.11 -2.38 -0.02 2.23 16 26 H 0.41 7.91 9.28 -74.06 -0.69 7.22 16 27 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 30 H 0.08 0.96 8.08 -2.38 -0.02 0.94 16 31 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.14 4.00 6.30 -2.91 -0.02 3.99 16 33 H 0.07 2.64 7.66 -2.39 -0.02 2.63 16 34 H 0.06 2.31 7.66 -2.39 -0.02 2.29 16 35 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H 0.00 0.16 8.14 -2.39 -0.02 0.15 16 37 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -70.51 323.53 4.24 -66.28 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.38 Total: 16.77 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 3.46 Total: -32.51 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -0.24 Total: -67.97 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -1.40 Total: -27.84 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -70.51 4.24 -66.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309895156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.575 kcal (2) G-P(sol) polarization free energy of solvation -70.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds