Wall clock time and date at job start Mon Mar 30 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30081 * 125.43719 * 2 1 4 4 C 1.35787 * 108.53391 * 180.16667 * 3 2 1 5 5 C 1.48307 * 126.37974 * 179.82469 * 4 3 2 6 6 N 1.30836 * 126.41810 * 179.71409 * 5 4 3 7 7 O 1.21288 * 110.07888 * 179.97438 * 6 5 4 8 8 C 1.33665 * 110.04287 * 359.97438 * 7 6 5 9 9 C 1.50706 * 126.43252 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47238 * 270.02769 * 9 8 7 11 11 H 1.08998 * 109.47192 * 54.99616 * 10 9 8 12 12 C 1.53000 * 109.47060 * 294.99946 * 10 9 8 13 13 C 1.50695 * 109.46942 * 174.99721 * 10 9 8 14 14 H 1.07997 * 120.00519 * 0.02562 * 13 10 9 15 15 C 1.37888 * 119.99951 * 179.97438 * 13 10 9 16 16 N 1.31512 * 119.99548 * 0.02562 * 15 13 10 17 17 Si 1.86794 * 119.99928 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47412 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47171 * 120.00158 * 17 15 13 20 20 H 1.48508 * 109.47089 * 239.99872 * 17 15 13 21 21 N 1.30968 * 107.13922 * 0.26037 * 8 7 6 22 22 C 1.35605 * 107.23454 * 359.55852 * 4 3 2 23 23 O 1.33985 * 125.43737 * 179.67688 * 2 1 3 24 24 H 1.09000 * 109.46743 * 180.29698 * 1 2 3 25 25 H 1.08997 * 109.47142 * 300.29846 * 1 2 3 26 26 H 1.08994 * 109.46851 * 60.30147 * 1 2 3 27 27 H 1.09001 * 109.46953 * 30.02380 * 9 8 7 28 28 H 1.09000 * 109.47318 * 150.01978 * 9 8 7 29 29 H 1.09000 * 109.47227 * 59.99725 * 12 10 9 30 30 H 1.09004 * 109.47014 * 180.02562 * 12 10 9 31 31 H 1.09006 * 109.46717 * 300.00177 * 12 10 9 32 32 H 0.97002 * 119.99896 * 180.02562 * 16 15 13 33 33 H 1.08000 * 126.50216 * 180.24117 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2612 1.0598 0.0000 4 6 3.5604 0.6650 -0.0037 5 6 4.7492 1.5517 -0.0087 6 7 6.0013 1.1721 -0.0071 7 8 6.7303 2.1415 -0.0129 8 6 6.0020 3.2623 -0.0195 9 6 6.5311 4.6734 -0.0274 10 6 6.7104 5.1589 1.4124 11 1 7.3460 4.4594 1.9553 12 6 5.3442 5.2427 2.0962 13 6 7.3537 6.5217 1.4065 14 1 7.6087 6.9944 0.4697 15 6 7.6156 7.1655 2.5974 16 7 7.3046 6.5901 3.7383 17 14 8.4124 8.8550 2.5901 18 1 8.6617 9.2788 1.1888 19 1 7.5086 9.8314 3.2496 20 1 9.7010 8.7979 3.3261 21 7 4.7423 2.9041 -0.0116 22 6 3.5683 -0.6910 0.0039 23 8 2.2839 -1.0916 0.0062 24 1 -0.3633 -1.0277 0.0053 25 1 -0.3633 0.5184 0.8873 26 1 -0.3633 0.5091 -0.8926 27 1 7.4920 4.6983 -0.5414 28 1 5.8254 5.3232 -0.5448 29 1 4.8789 4.2570 2.1004 30 1 5.4719 5.5891 3.1218 31 1 4.7085 5.9423 1.5532 32 1 7.4885 7.0431 4.5760 33 1 4.4402 -1.3284 0.0072 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310101343.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:34 Heat of formation + Delta-G solvation = 81.268879 kcal Electronic energy + Delta-G solvation = -18912.580750 eV Core-core repulsion = 15750.483767 eV Total energy + Delta-G solvation = -3162.096983 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.14319 -43.49656 -36.04231 -35.54260 -34.49438 -32.96487 -31.99665 -30.64265 -28.02001 -26.56530 -25.20394 -24.75594 -22.92930 -21.83077 -20.88725 -19.61155 -17.87260 -17.67213 -16.94112 -16.68071 -16.29419 -15.44282 -14.66992 -14.37187 -14.09934 -13.72967 -13.40779 -13.07920 -12.85090 -12.65825 -12.31416 -12.24493 -11.64522 -11.28345 -11.02951 -10.83963 -10.78680 -10.62639 -10.59517 -10.16263 -10.12212 -9.88066 -9.34214 -8.92139 -8.79278 -8.40167 -6.04735 -4.13256 0.91396 1.55283 2.14672 2.43796 3.12137 3.21616 3.28330 3.34944 3.37340 3.40449 3.92094 4.36178 4.40233 4.77202 5.05683 5.11072 5.18069 5.26904 5.32070 5.52869 5.62777 5.84062 6.00579 6.08020 6.20145 6.39590 6.55195 6.94683 7.16640 7.26800 7.46176 7.64980 7.85721 8.07227 8.30992 8.49062 8.89401 9.52330 11.01401 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.038077 B = 0.003916 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.178243 B = 7149.227516 C = 7547.616506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.194 3.806 3 N -0.447 5.447 4 C 0.066 3.934 5 C 0.237 3.763 6 N -0.387 5.387 7 O 0.076 5.924 8 C 0.221 3.779 9 C -0.027 4.027 10 C 0.049 3.951 11 H 0.032 0.968 12 C -0.138 4.138 13 C -0.517 4.517 14 H 0.062 0.938 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 N -0.465 5.465 22 C -0.026 4.026 23 O -0.199 6.199 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.010 0.990 30 H 0.082 0.918 31 H 0.030 0.970 32 H 0.261 0.739 33 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.358 -13.328 -7.528 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.015 4.015 3 N -0.177 5.177 4 C -0.053 4.053 5 C -0.033 4.033 6 N -0.098 5.098 7 O 0.017 5.983 8 C 0.002 3.998 9 C -0.066 4.066 10 C 0.030 3.970 11 H 0.050 0.950 12 C -0.196 4.196 13 C -0.555 4.555 14 H 0.080 0.920 15 C -0.139 4.139 16 N -0.525 5.525 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.210 1.210 21 N -0.197 5.197 22 C -0.100 4.100 23 O -0.085 6.085 24 H 0.108 0.892 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.029 0.971 30 H 0.101 0.899 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -9.810 -13.461 -7.327 18.197 hybrid contribution 0.896 0.367 0.198 0.988 sum -8.914 -13.094 -7.128 17.370 Atomic orbital electron populations 1.20290 0.80721 1.04764 1.05479 1.26433 0.96754 0.78137 1.00190 1.70734 1.00253 1.29457 1.17256 1.18265 0.88842 0.89377 1.08854 1.22303 0.89822 0.88552 1.02652 1.74797 1.02430 1.10106 1.22444 1.85256 1.35251 1.11886 1.65918 1.29649 0.84682 0.93922 0.91595 1.20905 1.01226 0.80256 1.04221 1.18749 0.94943 0.96814 0.86522 0.94987 1.21829 0.96515 0.97225 1.03990 1.21062 1.40027 1.01555 0.92867 0.92018 1.24958 0.95467 0.97941 0.95514 1.69913 1.47121 1.38042 0.97375 0.86477 0.78989 0.83985 0.78185 1.19628 1.21012 1.21023 1.72200 1.18779 1.08022 1.20713 1.24976 0.85046 0.95220 1.04761 1.84431 1.16418 1.37791 1.69894 0.89214 0.88184 0.88261 0.88896 0.88095 0.97095 0.89908 0.95060 0.92909 0.75715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 36.01 0.38 0.01 16 2 C 0.19 2.34 8.32 -13.02 -0.11 2.23 16 3 N -0.45 -7.34 11.35 -7.55 -0.09 -7.42 16 4 C 0.07 1.10 7.10 -82.92 -0.59 0.51 16 5 C 0.24 4.53 8.08 -156.08 -1.26 3.27 16 6 N -0.39 -7.15 12.19 30.98 0.38 -6.77 16 7 O 0.08 1.44 11.29 18.05 0.20 1.65 16 8 C 0.22 4.33 6.96 -12.98 -0.09 4.24 16 9 C -0.03 -0.53 5.26 -27.88 -0.15 -0.67 16 10 C 0.05 1.19 2.29 -91.78 -0.21 0.98 16 11 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 12 C -0.14 -3.41 8.78 37.16 0.33 -3.09 16 13 C -0.52 -13.44 8.56 -34.44 -0.29 -13.74 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -24.97 11.32 55.43 0.63 -24.34 16 17 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 N -0.46 -9.65 10.88 -9.87 -0.11 -9.75 16 22 C -0.03 -0.33 12.12 29.79 0.36 0.04 16 23 O -0.20 -2.35 10.74 5.89 0.06 -2.29 16 24 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 28 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 29 H 0.01 0.25 6.83 -51.93 -0.35 -0.11 16 30 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.23 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 295.91 15.07 4.46 4.46 Total: -1.00 -31.74 295.91 -4.80 -36.55 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -3.59 Total: -3.07 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -1.73 Total: -4.61 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.81 Total: -48.29 kcal Atomic # 8 Polarization: -0.90 SS G_CDS: 0.27 Total: -0.64 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.74 -4.80 -36.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310101343.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.814 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds