Wall clock time and date at job start Mon Mar 30 2020 06:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30081 * 125.43719 * 2 1 4 4 C 1.35787 * 108.53391 * 180.16667 * 3 2 1 5 5 C 1.48307 * 126.37974 * 179.82469 * 4 3 2 6 6 N 1.30836 * 126.41810 * 179.71409 * 5 4 3 7 7 O 1.21288 * 110.07888 * 179.97438 * 6 5 4 8 8 C 1.33665 * 110.04287 * 359.97438 * 7 6 5 9 9 C 1.50706 * 126.43252 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47238 * 270.02769 * 9 8 7 11 11 H 1.08998 * 109.47192 * 54.99616 * 10 9 8 12 12 C 1.53000 * 109.47060 * 294.99946 * 10 9 8 13 13 C 1.50695 * 109.46942 * 174.99721 * 10 9 8 14 14 H 1.07997 * 120.00519 * 0.02562 * 13 10 9 15 15 C 1.37888 * 119.99951 * 179.97438 * 13 10 9 16 16 N 1.31512 * 119.99548 * 0.02562 * 15 13 10 17 17 Si 1.86794 * 119.99928 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47412 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47171 * 120.00158 * 17 15 13 20 20 H 1.48508 * 109.47089 * 239.99872 * 17 15 13 21 21 N 1.30968 * 107.13922 * 0.26037 * 8 7 6 22 22 C 1.35605 * 107.23454 * 359.55852 * 4 3 2 23 23 O 1.33985 * 125.43737 * 179.67688 * 2 1 3 24 24 H 1.09000 * 109.46743 * 180.29698 * 1 2 3 25 25 H 1.08997 * 109.47142 * 300.29846 * 1 2 3 26 26 H 1.08994 * 109.46851 * 60.30147 * 1 2 3 27 27 H 1.09001 * 109.46953 * 30.02380 * 9 8 7 28 28 H 1.09000 * 109.47318 * 150.01978 * 9 8 7 29 29 H 1.09000 * 109.47227 * 59.99725 * 12 10 9 30 30 H 1.09004 * 109.47014 * 180.02562 * 12 10 9 31 31 H 1.09006 * 109.46717 * 300.00177 * 12 10 9 32 32 H 0.97002 * 119.99896 * 180.02562 * 16 15 13 33 33 H 1.08000 * 126.50216 * 180.24117 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2612 1.0598 0.0000 4 6 3.5604 0.6650 -0.0037 5 6 4.7492 1.5517 -0.0087 6 7 6.0013 1.1721 -0.0071 7 8 6.7303 2.1415 -0.0129 8 6 6.0020 3.2623 -0.0195 9 6 6.5311 4.6734 -0.0274 10 6 6.7104 5.1589 1.4124 11 1 7.3460 4.4594 1.9553 12 6 5.3442 5.2427 2.0962 13 6 7.3537 6.5217 1.4065 14 1 7.6087 6.9944 0.4697 15 6 7.6156 7.1655 2.5974 16 7 7.3046 6.5901 3.7383 17 14 8.4124 8.8550 2.5901 18 1 8.6617 9.2788 1.1888 19 1 7.5086 9.8314 3.2496 20 1 9.7010 8.7979 3.3261 21 7 4.7423 2.9041 -0.0116 22 6 3.5683 -0.6910 0.0039 23 8 2.2839 -1.0916 0.0062 24 1 -0.3633 -1.0277 0.0053 25 1 -0.3633 0.5184 0.8873 26 1 -0.3633 0.5091 -0.8926 27 1 7.4920 4.6983 -0.5414 28 1 5.8254 5.3232 -0.5448 29 1 4.8789 4.2570 2.1004 30 1 5.4719 5.5891 3.1218 31 1 4.7085 5.9423 1.5532 32 1 7.4885 7.0431 4.5760 33 1 4.4402 -1.3284 0.0072 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310101343.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:33 Heat of formation + Delta-G solvation = 57.685661 kcal Electronic energy + Delta-G solvation = -18913.603396 eV Core-core repulsion = 15750.483767 eV Total energy + Delta-G solvation = -3163.119628 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.61242 -44.49865 -37.63442 -37.04704 -35.75285 -34.49691 -33.21722 -32.25105 -29.00446 -28.22791 -27.23124 -26.02664 -24.39010 -22.96581 -22.29831 -21.17317 -19.30748 -18.98686 -18.32724 -17.92363 -17.87100 -16.59011 -16.56671 -15.98244 -15.03799 -14.99449 -14.77332 -14.31231 -14.02165 -13.94778 -13.60767 -13.41790 -13.30025 -13.06195 -12.85038 -12.48574 -12.27484 -12.21944 -12.09800 -11.81971 -11.75381 -11.72968 -10.96918 -10.88975 -10.45509 -9.92062 -8.08351 -6.23190 -0.30281 0.29908 0.88248 1.47416 1.49698 1.51667 1.60833 1.76087 1.82699 2.15445 2.47276 2.66536 3.21887 3.34867 3.66238 3.95008 4.32444 4.34588 4.43544 4.49000 4.53423 4.64797 4.71057 4.76585 4.81167 4.93749 5.02545 5.14381 5.20007 5.32615 5.61052 5.83455 6.02747 6.28260 6.46000 6.87918 7.00604 7.46290 8.97899 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.038077 B = 0.003916 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.178243 B = 7149.227516 C = 7547.616506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.208 3.792 3 N -0.499 5.499 4 C 0.014 3.986 5 C 0.236 3.764 6 N -0.387 5.387 7 O 0.073 5.927 8 C 0.219 3.781 9 C -0.015 4.015 10 C 0.048 3.952 11 H 0.004 0.996 12 C -0.123 4.123 13 C -0.527 4.527 14 H 0.074 0.926 15 C 0.010 3.990 16 N -0.922 5.922 17 Si 0.962 3.038 18 H -0.258 1.258 19 H -0.286 1.286 20 H -0.284 1.284 21 N -0.491 5.491 22 C 0.006 3.994 23 O -0.191 6.191 24 H 0.120 0.880 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.009 0.991 30 H 0.054 0.946 31 H 0.032 0.968 32 H 0.260 0.740 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.975 -14.036 -8.672 19.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.001 4.001 3 N -0.229 5.229 4 C -0.104 4.104 5 C -0.035 4.035 6 N -0.098 5.098 7 O 0.015 5.985 8 C 0.000 4.000 9 C -0.054 4.054 10 C 0.029 3.971 11 H 0.022 0.978 12 C -0.181 4.181 13 C -0.565 4.565 14 H 0.092 0.908 15 C -0.189 4.189 16 N -0.561 5.561 17 Si 0.787 3.213 18 H -0.182 1.182 19 H -0.212 1.212 20 H -0.210 1.210 21 N -0.224 5.224 22 C -0.069 4.069 23 O -0.077 6.077 24 H 0.139 0.861 25 H 0.127 0.873 26 H 0.130 0.870 27 H 0.137 0.863 28 H 0.129 0.871 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -10.412 -14.162 -8.490 19.520 hybrid contribution 0.980 0.468 0.561 1.222 sum -9.432 -13.694 -7.929 18.422 Atomic orbital electron populations 1.20643 0.77019 1.07137 1.06428 1.27447 0.98259 0.77195 0.97239 1.70678 1.00690 1.31699 1.19812 1.18432 0.88576 0.90614 1.12731 1.22748 0.90785 0.88338 1.01582 1.74755 1.02255 1.09759 1.23021 1.85234 1.35316 1.11834 1.66105 1.29553 0.84662 0.94077 0.91694 1.20713 1.03013 0.80283 1.01412 1.18629 0.93623 0.95883 0.89004 0.97814 1.21649 0.97182 0.96911 1.02389 1.21471 1.39480 1.02204 0.93311 0.90760 1.25802 0.96156 1.01623 0.95270 1.70060 1.48448 1.39648 0.97949 0.85447 0.77716 0.79437 0.78687 1.18159 1.21211 1.21014 1.72176 1.19363 1.09353 1.21496 1.25486 0.86100 0.94091 1.01229 1.84490 1.16075 1.37600 1.69572 0.86124 0.87322 0.86957 0.86297 0.87060 0.97218 0.92717 0.94865 0.93075 0.72657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.51 71.24 0.75 0.17 16 2 C 0.21 4.65 8.32 88.37 0.73 5.38 16 3 N -0.50 -16.14 11.35 -292.68 -3.32 -19.47 16 4 C 0.01 0.47 7.10 40.60 0.29 0.76 16 5 C 0.24 9.04 8.08 137.23 1.11 10.15 16 6 N -0.39 -14.19 12.19 -59.02 -0.72 -14.91 16 7 O 0.07 2.74 11.29 74.65 0.84 3.59 16 8 C 0.22 8.62 6.96 88.36 0.62 9.24 16 9 C -0.02 -0.59 5.26 29.85 0.16 -0.43 16 10 C 0.05 2.35 2.29 -11.54 -0.03 2.32 16 11 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 12 C -0.12 -6.25 8.78 71.98 0.63 -5.61 16 13 C -0.53 -27.16 8.56 25.60 0.22 -26.94 16 14 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 15 C 0.01 0.54 5.30 84.66 0.45 0.99 16 16 N -0.92 -52.89 11.32 21.45 0.24 -52.64 16 17 Si 0.96 42.07 29.54 68.60 2.03 44.10 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 19 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 21 N -0.49 -20.55 10.88 -302.41 -3.29 -23.84 16 22 C 0.01 0.14 12.12 67.21 0.81 0.96 16 23 O -0.19 -4.06 10.74 -1.85 -0.02 -4.08 16 24 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 28 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 29 H 0.01 0.44 6.83 -2.39 -0.02 0.43 16 30 H 0.05 3.07 6.07 -2.39 -0.01 3.05 16 31 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 33 H 0.26 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -69.60 295.91 2.64 -66.96 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: 1.14 Total: 3.31 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 5.74 Total: -3.03 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -7.09 Total: -110.86 kcal Atomic # 8 Polarization: -1.31 SS G_CDS: 0.82 Total: -0.49 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -69.60 2.64 -66.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310101343.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.647 kcal (2) G-P(sol) polarization free energy of solvation -69.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds