Wall clock time and date at job start Mon Mar 30 2020 07:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35675 * 117.00248 * 2 1 4 4 C 1.38920 * 119.68357 * 179.97438 * 3 2 1 5 5 C 1.38381 * 119.11053 * 179.97438 * 4 3 2 6 6 C 1.38826 * 118.48535 * 359.97438 * 5 4 3 7 7 C 1.38047 * 119.28923 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.58228 * 179.97438 * 7 6 5 9 9 H 1.08998 * 110.55109 * 245.69637 * 8 7 6 10 10 C 1.54992 * 110.61907 * 122.81842 * 8 7 6 11 11 C 1.54985 * 102.01396 * 204.59785 * 10 8 7 12 12 C 1.54100 * 104.25181 * 20.66288 * 11 10 8 13 13 C 1.52996 * 110.00463 * 242.67473 * 12 11 10 14 14 C 1.50698 * 109.87516 * 121.59213 * 12 11 10 15 15 H 1.08006 * 120.00430 * 0.71843 * 14 12 11 16 16 C 1.37881 * 120.00148 * 180.71769 * 14 12 11 17 17 N 1.31517 * 119.99419 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00250 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47086 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47091 * 119.99888 * 18 16 14 21 21 H 1.48501 * 109.47146 * 239.99950 * 18 16 14 22 22 O 1.43743 * 107.29140 * 2.17306 * 12 11 10 23 23 N 1.31961 * 120.83639 * 359.73555 * 7 6 5 24 24 H 1.08998 * 109.46864 * 300.00240 * 1 2 3 25 25 H 1.08999 * 109.46969 * 59.99622 * 1 2 3 26 26 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.44509 * 359.96306 * 4 3 2 28 28 H 1.07998 * 120.75378 * 180.02562 * 5 4 3 29 29 H 1.08003 * 120.35720 * 179.97438 * 6 5 4 30 30 H 1.09003 * 110.90932 * 322.67630 * 10 8 7 31 31 H 1.09004 * 110.90674 * 86.27316 * 10 8 7 32 32 H 1.09002 * 110.33881 * 262.02879 * 11 10 8 33 33 H 1.08993 * 110.68763 * 139.48054 * 11 10 8 34 34 H 1.09000 * 109.46755 * 179.36140 * 13 12 11 35 35 H 1.08994 * 109.47052 * 299.35763 * 13 12 11 36 36 H 1.08994 * 109.47236 * 59.36163 * 13 12 11 37 37 H 0.96997 * 119.99478 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4327 1.2738 0.0005 5 6 4.0487 2.5130 0.0000 6 6 3.2507 3.6490 -0.0016 7 6 1.8773 3.5096 -0.0021 8 6 1.0047 4.7384 -0.0033 9 1 0.4403 4.8078 0.9266 10 6 0.0482 4.7274 -1.2228 11 6 -0.2510 6.2363 -1.4117 12 6 0.9134 6.9466 -0.6945 13 6 0.3797 7.7765 0.4747 14 6 1.6445 7.8388 -1.6643 15 1 1.3120 7.9092 -2.6895 16 6 2.7380 8.5653 -1.2429 17 7 3.1426 8.4800 0.0056 18 14 3.6438 9.6718 -2.4448 19 1 2.9941 9.5915 -3.7777 20 1 3.6008 11.0735 -1.9562 21 1 5.0571 9.2296 -2.5561 22 8 1.8000 5.9264 -0.2053 23 7 1.3187 2.3140 -0.0063 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 4.0230 0.3693 0.0016 28 1 5.1256 2.5944 0.0000 29 1 3.6996 4.6313 -0.0017 30 1 0.5442 4.3173 -2.1025 31 1 -0.8628 4.1728 -0.9976 32 1 -1.2013 6.4955 -0.9450 33 1 -0.2631 6.4969 -2.4699 34 1 1.2110 8.2657 0.9824 35 1 -0.3113 8.5311 0.0991 36 1 -0.1408 7.1240 1.1757 37 1 3.9121 8.9908 0.3020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310378854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:20 Heat of formation + Delta-G solvation = -63.694570 kcal Electronic energy + Delta-G solvation = -20197.844010 eV Core-core repulsion = 17133.001284 eV Total energy + Delta-G solvation = -3064.842726 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.69015 -40.17019 -38.69636 -35.07232 -33.67917 -32.81123 -32.21650 -30.68234 -28.29232 -27.43673 -26.58265 -23.93579 -23.78134 -21.94542 -21.19669 -19.11489 -18.81342 -17.58205 -17.09556 -16.85055 -16.74040 -16.44234 -15.85677 -15.27429 -15.01087 -14.75082 -14.47203 -14.19051 -14.15058 -13.62474 -13.20556 -13.08123 -12.79735 -12.66510 -12.53342 -12.36734 -12.24303 -12.05265 -11.94189 -11.81026 -11.36063 -10.96432 -10.81827 -10.58799 -10.54355 -9.91896 -9.37660 -8.02040 -6.24134 0.14565 0.35192 1.41931 1.44932 1.55008 2.12971 2.45062 2.75941 2.80663 3.26141 3.70877 3.89514 4.06810 4.13960 4.16450 4.24550 4.37567 4.45893 4.49088 4.55155 4.59000 4.73530 4.78191 4.80849 4.93458 5.02346 5.06715 5.16717 5.21626 5.30694 5.34047 5.41600 5.51222 5.69684 6.13527 6.24963 6.36035 6.59711 6.86157 7.04705 7.49819 8.99349 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.027537 B = 0.005692 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.582575 B = 4917.699393 C = 5483.876592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.315 6.315 3 C 0.300 3.700 4 C -0.191 4.191 5 C -0.037 4.037 6 C -0.197 4.197 7 C 0.164 3.836 8 C 0.111 3.889 9 H 0.069 0.931 10 C -0.115 4.115 11 C -0.138 4.138 12 C 0.212 3.788 13 C -0.141 4.141 14 C -0.541 4.541 15 H 0.056 0.944 16 C 0.035 3.965 17 N -0.886 5.886 18 Si 0.948 3.052 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.283 1.283 22 O -0.363 6.363 23 N -0.544 5.544 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.127 0.873 27 H 0.170 0.830 28 H 0.172 0.828 29 H 0.126 0.874 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.027 0.973 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.733 -13.806 0.387 14.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.222 6.222 3 C 0.121 3.879 4 C -0.211 4.211 5 C -0.062 4.062 6 C -0.218 4.218 7 C 0.029 3.971 8 C 0.051 3.949 9 H 0.086 0.914 10 C -0.153 4.153 11 C -0.175 4.175 12 C 0.174 3.826 13 C -0.199 4.199 14 C -0.579 4.579 15 H 0.075 0.925 16 C -0.167 4.167 17 N -0.524 5.524 18 Si 0.774 3.226 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.209 1.209 22 O -0.282 6.282 23 N -0.270 5.270 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.145 0.855 27 H 0.187 0.813 28 H 0.189 0.811 29 H 0.144 0.856 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.196 -14.040 0.544 14.409 hybrid contribution 0.950 1.116 -0.447 1.532 sum -2.246 -12.924 0.097 13.118 Atomic orbital electron populations 1.23027 0.76172 1.04576 1.02017 1.86213 1.24116 1.23721 1.88150 1.20071 0.90213 0.84513 0.93153 1.21354 0.91567 1.00315 1.07890 1.21764 1.01897 0.90181 0.92369 1.21927 0.94523 1.00870 1.04451 1.20562 0.92405 0.90781 0.93393 1.21564 0.90594 0.84638 0.98057 0.91392 1.22824 0.99155 0.96501 0.96831 1.23038 0.99001 0.94285 1.01222 1.19794 0.86591 0.85513 0.90677 1.22034 0.99854 0.99336 0.98657 1.21449 1.14905 1.25192 0.96310 0.92549 1.25705 0.97461 0.97150 0.96417 1.70103 1.25047 1.40753 1.16449 0.85675 0.78436 0.78750 0.79716 1.19301 1.20390 1.20909 1.89187 1.33464 1.19312 1.86279 1.66791 1.41580 0.98140 1.20458 0.92905 0.92959 0.85522 0.81281 0.81058 0.85613 0.92630 0.89130 0.90829 0.91817 0.92115 0.93917 0.95402 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.38 113.37 1.18 1.94 16 2 O -0.31 -8.31 10.48 -89.92 -0.94 -9.25 16 3 C 0.30 9.17 7.49 84.79 0.63 9.81 16 4 C -0.19 -5.04 10.04 22.47 0.23 -4.81 16 5 C -0.04 -1.04 10.17 22.44 0.23 -0.82 16 6 C -0.20 -7.37 9.43 22.37 0.21 -7.16 16 7 C 0.16 6.33 6.15 42.50 0.26 6.59 16 8 C 0.11 4.61 3.76 30.53 0.11 4.72 16 9 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 10 C -0.12 -4.34 6.47 31.95 0.21 -4.13 16 11 C -0.14 -5.65 6.27 31.65 0.20 -5.45 16 12 C 0.21 10.50 0.74 -11.17 -0.01 10.49 16 13 C -0.14 -6.80 8.40 71.98 0.60 -6.20 16 14 C -0.54 -29.60 8.25 25.60 0.21 -29.38 16 15 H 0.06 3.05 7.33 -2.91 -0.02 3.03 16 16 C 0.04 1.93 5.26 84.66 0.45 2.38 16 17 N -0.89 -50.59 10.94 21.45 0.23 -50.36 16 18 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 O -0.36 -18.39 8.63 -148.98 -1.29 -19.68 16 23 N -0.54 -18.91 8.97 -296.99 -2.66 -21.57 16 24 H 0.05 1.14 8.11 -2.39 -0.02 1.12 16 25 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 26 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.17 3.26 8.06 -2.91 -0.02 3.23 16 28 H 0.17 3.58 8.06 -2.91 -0.02 3.55 16 29 H 0.13 5.42 7.09 -2.91 -0.02 5.40 16 30 H 0.05 2.16 8.05 -2.39 -0.02 2.14 16 31 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 32 H 0.07 2.69 7.70 -2.39 -0.02 2.67 16 33 H 0.06 2.62 7.40 -2.39 -0.02 2.60 16 34 H 0.06 3.29 6.06 -2.39 -0.01 3.28 16 35 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -63.68 307.65 2.94 -60.75 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 1.06 Total: 16.90 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 4.51 Total: -22.02 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -2.43 Total: -71.93 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -2.23 Total: -28.93 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -63.68 2.94 -60.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310378854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.948 kcal (2) G-P(sol) polarization free energy of solvation -63.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds