Wall clock time and date at job start Mon Mar 30 2020 06:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 110.69610 * 2 1 4 4 S 1.83957 * 110.78734 * 236.48356 * 2 1 3 5 5 C 1.83954 * 94.80703 * 207.22928 * 4 2 1 6 6 C 1.54260 * 102.58035 * 34.49086 * 5 4 2 7 7 C 1.52333 * 112.59102 * 335.47572 * 6 5 4 8 8 H 1.08997 * 108.75376 * 239.26127 * 7 6 5 9 9 N 1.46497 * 108.87169 * 120.81639 * 7 6 5 10 10 C 1.39681 * 120.00073 * 84.76904 * 9 7 6 11 11 C 1.39337 * 119.94947 * 0.02562 * 10 9 7 12 12 C 1.38485 * 120.42274 * 179.97438 * 11 10 9 13 13 C 1.37683 * 120.32372 * 359.74390 * 12 11 10 14 14 C 1.40748 * 119.89347 * 0.50845 * 13 12 11 15 15 C 1.41406 * 120.20966 * 179.76538 * 14 13 12 16 16 H 1.08000 * 120.00568 * 149.70627 * 15 14 13 17 17 C 1.39933 * 119.99781 * 329.44004 * 15 14 13 18 18 N 1.30829 * 119.99849 * 161.98767 * 17 15 14 19 19 Si 1.86796 * 119.99949 * 341.98459 * 17 15 14 20 20 H 1.48507 * 109.46742 * 95.06432 * 19 17 15 21 21 H 1.48497 * 109.47038 * 215.05846 * 19 17 15 22 22 H 1.48498 * 109.47518 * 335.06328 * 19 17 15 23 23 C 1.38271 * 119.95146 * 180.02562 * 10 9 7 24 24 H 1.08998 * 109.46843 * 290.97051 * 1 2 3 25 25 H 1.08999 * 109.47336 * 50.97396 * 1 2 3 26 26 H 1.09001 * 109.46260 * 170.97677 * 1 2 3 27 27 H 1.08996 * 110.79041 * 152.76316 * 5 4 2 28 28 H 1.09002 * 110.79023 * 276.03153 * 5 4 2 29 29 H 1.08998 * 108.87120 * 214.65324 * 6 5 4 30 30 H 1.09001 * 108.86747 * 96.29083 * 6 5 4 31 31 H 0.97004 * 119.99701 * 264.76311 * 9 7 6 32 32 H 1.07999 * 119.78972 * 359.96086 * 11 10 9 33 33 H 1.07999 * 119.83289 * 179.97438 * 12 11 10 34 34 H 1.07993 * 120.05254 * 180.25870 * 13 12 11 35 35 H 0.96999 * 120.00249 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.16431 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9153 1.0197 0.0000 4 16 2.1829 -0.9496 -1.4339 5 6 3.7615 -1.4091 -0.6086 6 6 3.3327 -1.5847 0.8628 7 6 2.0776 -0.7922 1.2051 8 1 2.3122 -0.0940 2.0086 9 7 1.0440 -1.7198 1.6714 10 6 1.0126 -2.1144 3.0109 11 6 1.9646 -1.6248 3.9029 12 6 1.9424 -2.0092 5.2331 13 6 0.9752 -2.8760 5.6902 14 6 0.0102 -3.3830 4.7998 15 6 -0.9831 -4.2775 5.2609 16 1 -1.9555 -4.2937 4.7912 17 6 -0.7044 -5.1458 6.3224 18 7 -1.6843 -5.7109 6.9798 19 14 1.0666 -5.4979 6.8005 20 1 1.4712 -4.5903 7.9041 21 1 1.1869 -6.9081 7.2502 22 1 1.9498 -5.2754 5.6276 23 6 0.0369 -2.9904 3.4499 24 1 -0.3633 0.3678 0.9596 25 1 -0.3634 0.6471 -0.7983 26 1 -0.3632 -1.0150 -0.1612 27 1 4.1513 -2.3436 -1.0121 28 1 4.4966 -0.6103 -0.7076 29 1 4.1457 -1.2536 1.5088 30 1 3.1445 -2.6416 1.0513 31 1 0.3813 -2.0598 1.0499 32 1 2.7248 -0.9414 3.5545 33 1 2.6851 -1.6242 5.9161 34 1 0.9594 -3.1696 6.7293 35 1 -1.4911 -6.3130 7.7153 36 1 -0.7017 -3.3702 2.7596 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313437206.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:48 Heat of formation + Delta-G solvation = 5.059004 kcal Electronic energy + Delta-G solvation = -17469.778823 eV Core-core repulsion = 14850.670346 eV Total energy + Delta-G solvation = -2619.108477 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.24233 -38.33484 -35.51979 -33.89448 -32.98240 -32.00352 -29.51921 -27.20863 -26.68940 -24.34649 -22.86084 -22.53811 -20.61236 -19.38831 -17.97302 -17.52271 -17.19008 -16.66619 -16.39343 -15.52748 -15.15390 -15.08154 -14.75014 -14.42702 -14.21142 -14.11034 -13.81866 -13.49820 -13.13390 -12.94187 -12.69711 -12.56986 -12.27908 -12.22659 -11.99462 -11.81872 -11.57096 -11.33132 -11.08791 -10.82780 -10.56808 -9.44796 -8.85766 -8.74935 -8.06255 -6.48340 0.86198 0.88436 1.11154 1.29744 1.35105 1.45020 1.53612 2.17557 2.63784 2.69291 3.37674 3.63003 3.83320 3.96070 4.06610 4.15457 4.31185 4.40747 4.47050 4.67299 4.75293 4.78071 4.79039 4.86591 4.91146 5.04011 5.08952 5.18367 5.19476 5.26468 5.56036 5.79149 5.89106 6.02485 6.12661 6.41527 6.72372 6.84687 6.90187 7.08266 8.23523 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.034703 B = 0.004878 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.652822 B = 5738.659965 C = 5995.070322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.027 4.027 3 H 0.124 0.876 4 S -0.346 6.346 5 C -0.048 4.048 6 C -0.141 4.141 7 C 0.153 3.847 8 H 0.096 0.904 9 N -0.740 5.740 10 C 0.248 3.752 11 C -0.285 4.285 12 C -0.048 4.048 13 C -0.294 4.294 14 C 0.107 3.893 15 C -0.491 4.491 16 H 0.050 0.950 17 C 0.048 3.952 18 N -0.857 5.857 19 Si 0.972 3.028 20 H -0.259 1.259 21 H -0.281 1.281 22 H -0.255 1.255 23 C -0.295 4.295 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.397 0.603 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.292 0.708 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.984 10.797 -11.667 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.156 4.156 3 H 0.142 0.858 4 S -0.120 6.120 5 C -0.196 4.196 6 C -0.181 4.181 7 C 0.045 3.955 8 H 0.114 0.886 9 N -0.372 5.372 10 C 0.146 3.854 11 C -0.308 4.308 12 C -0.067 4.067 13 C -0.314 4.314 14 C 0.104 3.896 15 C -0.521 4.521 16 H 0.068 0.932 17 C -0.165 4.165 18 N -0.484 5.484 19 Si 0.796 3.204 20 H -0.184 1.184 21 H -0.208 1.208 22 H -0.179 1.179 23 C -0.319 4.319 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.233 0.767 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.529 10.511 -12.641 20.080 hybrid contribution 0.021 -0.628 1.276 1.423 sum 11.550 9.883 -11.365 18.980 Atomic orbital electron populations 1.21589 0.91546 1.02546 1.03068 1.24187 0.99793 1.00866 0.90740 0.85813 1.88218 1.25453 1.70204 1.28136 1.24151 0.94780 1.05765 0.94944 1.22610 0.98060 1.01883 0.95578 1.21468 0.87064 0.90629 0.96292 0.88594 1.44897 1.34488 1.51656 1.06187 1.17551 0.92599 0.90853 0.84432 1.20355 1.05056 1.11968 0.93418 1.20770 0.95812 0.94465 0.95612 1.20959 1.03572 1.08746 0.98122 1.17584 0.90501 0.90018 0.91512 1.19455 0.99395 1.18942 1.14344 0.93217 1.26811 1.03164 0.93606 0.92958 1.69740 1.36117 1.25243 1.17283 0.85397 0.78407 0.76674 0.79947 1.18414 1.20830 1.17851 1.20488 1.05207 1.10965 0.95273 0.90835 0.90816 0.92527 0.87474 0.87102 0.88731 0.91694 0.76663 0.85307 0.85645 0.89253 0.89808 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.35 71.98 0.60 -1.95 16 2 C -0.03 -0.51 3.88 31.02 0.12 -0.39 16 3 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 4 S -0.35 -7.44 22.73 -56.49 -1.28 -8.72 16 5 C -0.05 -0.81 7.46 72.41 0.54 -0.27 16 6 C -0.14 -2.80 5.94 30.80 0.18 -2.62 16 7 C 0.15 3.34 2.57 45.20 0.12 3.45 16 8 H 0.10 2.02 6.35 -2.39 -0.02 2.00 16 9 N -0.74 -21.59 4.27 -318.16 -1.36 -22.94 16 10 C 0.25 9.44 6.61 38.16 0.25 9.69 16 11 C -0.29 -10.28 9.15 22.59 0.21 -10.07 16 12 C -0.05 -1.91 10.02 22.20 0.22 -1.69 16 13 C -0.29 -14.07 7.18 22.75 0.16 -13.91 16 14 C 0.11 5.61 5.08 -21.31 -0.11 5.50 16 15 C -0.49 -28.69 9.57 23.46 0.22 -28.46 16 16 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 17 C 0.05 2.68 5.40 85.25 0.46 3.14 16 18 N -0.86 -48.71 13.93 21.82 0.30 -48.40 16 19 Si 0.97 44.58 24.53 68.60 1.68 46.26 16 20 H -0.26 -11.19 6.70 99.48 0.67 -10.53 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.25 -11.92 6.89 99.48 0.69 -11.24 16 23 C -0.30 -13.82 9.63 22.86 0.22 -13.60 16 24 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.26 6.53 -2.39 -0.02 1.24 16 27 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.64 7.79 -2.39 -0.02 1.62 16 31 H 0.40 11.58 6.56 -92.71 -0.61 10.97 16 32 H 0.13 3.70 6.12 -2.91 -0.02 3.68 16 33 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 34 H 0.09 4.34 4.80 -2.91 -0.01 4.33 16 35 H 0.29 14.89 8.30 -92.71 -0.77 14.12 16 36 H 0.09 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -62.62 296.46 2.96 -59.66 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.41 Total: 25.33 kcal Atomic # 6 Polarization: -54.38 SS G_CDS: 3.20 Total: -51.18 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -1.05 Total: -71.35 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.68 Total: 46.26 kcal Atomic # 16 Polarization: -7.44 SS G_CDS: -1.28 Total: -8.72 kcal Total: -62.62 2.96 -59.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313437206.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.715 kcal (2) G-P(sol) polarization free energy of solvation -62.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds