Wall clock time and date at job start Mon Mar 30 2020 06:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 110.84636 * 2 1 4 4 S 1.83615 * 110.69156 * 123.29174 * 2 1 3 5 5 C 1.83958 * 94.79504 * 152.78986 * 4 2 1 6 6 C 1.54259 * 102.57855 * 325.52696 * 5 4 2 7 7 C 1.52338 * 112.58617 * 24.53289 * 6 5 4 8 8 H 1.08997 * 108.86727 * 120.67222 * 7 6 5 9 9 N 1.46496 * 108.86368 * 239.17536 * 7 6 5 10 10 C 1.39680 * 120.00357 * 275.76822 * 9 7 6 11 11 C 1.39339 * 119.95198 * 359.72744 * 10 9 7 12 12 C 1.38479 * 120.42898 * 180.27437 * 11 10 9 13 13 C 1.37695 * 120.31947 * 0.02562 * 12 11 10 14 14 C 1.40745 * 119.89479 * 359.97438 * 13 12 11 15 15 C 1.41406 * 120.20841 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00446 * 204.48318 * 15 14 13 17 17 C 1.39930 * 120.00045 * 24.47672 * 15 14 13 18 18 N 1.30836 * 119.99861 * 17.87109 * 17 15 14 19 19 Si 1.86799 * 120.00387 * 197.86773 * 17 15 14 20 20 H 1.48502 * 109.46872 * 60.00494 * 19 17 15 21 21 H 1.48496 * 109.47061 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47386 * 300.00547 * 19 17 15 23 23 C 1.38282 * 119.95451 * 180.02562 * 10 9 7 24 24 H 1.08995 * 109.46880 * 183.41984 * 1 2 3 25 25 H 1.09003 * 109.47065 * 303.41774 * 1 2 3 26 26 H 1.08994 * 109.47152 * 63.41679 * 1 2 3 27 27 H 1.09003 * 110.78610 * 207.25541 * 5 4 2 28 28 H 1.09005 * 110.78755 * 83.79981 * 5 4 2 29 29 H 1.08999 * 108.87259 * 263.70872 * 6 5 4 30 30 H 1.09004 * 108.86357 * 145.34460 * 6 5 4 31 31 H 0.97006 * 119.99928 * 95.77490 * 9 7 6 32 32 H 1.07998 * 119.78395 * 0.24951 * 11 10 9 33 33 H 1.07997 * 119.83899 * 179.97438 * 12 11 10 34 34 H 1.07997 * 120.04936 * 179.97438 * 13 12 11 35 35 H 0.96996 * 120.00481 * 179.97438 * 18 17 15 36 36 H 1.07996 * 120.15898 * 359.73997 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9179 1.0187 0.0000 4 16 2.1788 -0.9429 1.4358 5 6 3.7582 -1.4063 0.6145 6 6 3.3314 -1.5866 -0.8569 7 6 2.0775 -0.7942 -1.2037 8 1 2.3121 -0.0975 -2.0084 9 7 1.0439 -1.7225 -1.6685 10 6 1.0209 -2.1305 -3.0042 11 6 1.9782 -1.6494 -3.8951 12 6 1.9613 -2.0429 -5.2227 13 6 0.9969 -2.9143 -5.6771 14 6 0.0234 -3.4087 -4.7889 15 6 -0.9703 -4.3035 -5.2486 16 1 -1.9132 -4.3779 -4.7271 17 6 -0.7322 -5.0926 -6.3794 18 7 0.4919 -5.2749 -6.8039 19 14 -2.1619 -5.8860 -7.2827 20 1 -3.0862 -4.8308 -7.7700 21 1 -1.6468 -6.6651 -8.4372 22 1 -2.8891 -6.7931 -6.3589 23 6 0.0445 -3.0064 -3.4419 24 1 -0.3633 -1.0258 0.0613 25 1 -0.3633 0.5660 0.8578 26 1 -0.3633 0.4598 -0.9190 27 1 4.1467 -2.3397 1.0218 28 1 4.4927 -0.6064 0.7090 29 1 3.1427 -2.6441 -1.0422 30 1 4.1458 -1.2583 -1.5028 31 1 0.3754 -2.0539 -1.0486 32 1 2.7380 -0.9649 -3.5480 33 1 2.7075 -1.6637 -5.9051 34 1 0.9875 -3.2180 -6.7135 35 1 0.6571 -5.8222 -7.5875 36 1 -0.6983 -3.3795 -2.7524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313437209.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:55 Heat of formation + Delta-G solvation = 20.281398 kcal Electronic energy + Delta-G solvation = -17375.652893 eV Core-core repulsion = 14757.204509 eV Total energy + Delta-G solvation = -2618.448384 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.59677 -36.65351 -33.76834 -32.29904 -31.70763 -29.76103 -27.57959 -25.76699 -25.08683 -23.34081 -20.96254 -20.72298 -19.25379 -17.57903 -16.60282 -15.78691 -15.68436 -15.09835 -14.51196 -14.32387 -13.91114 -13.59440 -13.25251 -12.91517 -12.69232 -12.35917 -12.09369 -11.87057 -11.62202 -11.36377 -11.19894 -11.06513 -10.91316 -10.80332 -10.57109 -10.42582 -9.83157 -9.77184 -9.32951 -9.23313 -8.77087 -7.74398 -7.39861 -6.71648 -6.23379 -4.31622 1.82812 2.26929 2.86683 3.09101 3.12059 3.22200 3.36179 3.96098 4.11856 4.42556 4.70462 4.84038 4.94713 5.03202 5.13056 5.28125 5.53639 5.68153 5.70100 5.80575 5.86199 6.00430 6.14959 6.27641 6.33119 6.52082 7.03188 7.03842 7.11392 7.33692 7.38213 7.76933 7.90052 8.13358 8.24009 8.50039 8.60678 8.78098 8.99482 9.11075 10.24414 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.036588 B = 0.004418 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.084387 B = 6335.498702 C = 6621.765804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.041 4.041 3 H 0.099 0.901 4 S -0.308 6.308 5 C -0.061 4.061 6 C -0.143 4.143 7 C 0.160 3.840 8 H 0.087 0.913 9 N -0.752 5.752 10 C 0.225 3.775 11 C -0.304 4.304 12 C -0.075 4.075 13 C -0.199 4.199 14 C 0.142 3.858 15 C -0.465 4.465 16 H 0.075 0.925 17 C 0.078 3.922 18 N -0.792 5.792 19 Si 0.906 3.094 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.288 4.288 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.392 0.608 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.279 0.721 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 7.445 9.133 12.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.170 4.170 3 H 0.117 0.883 4 S -0.082 6.082 5 C -0.210 4.210 6 C -0.184 4.184 7 C 0.051 3.949 8 H 0.105 0.895 9 N -0.388 5.388 10 C 0.126 3.874 11 C -0.327 4.327 12 C -0.094 4.094 13 C -0.219 4.219 14 C 0.139 3.861 15 C -0.494 4.494 16 H 0.093 0.907 17 C -0.140 4.140 18 N -0.417 5.417 19 Si 0.730 3.270 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.312 4.312 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.119 0.881 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.228 0.772 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.132 0.868 35 H 0.090 0.910 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.344 7.174 10.050 12.793 hybrid contribution -0.160 -0.377 -1.286 1.350 sum 3.184 6.797 8.764 11.539 Atomic orbital electron populations 1.21589 0.91444 1.03143 1.02463 1.24154 0.99994 1.00290 0.92528 0.88267 1.87889 1.23638 1.69894 1.26769 1.24109 0.95582 1.04423 0.96859 1.22701 0.98223 1.03692 0.93782 1.21124 0.87634 0.91020 0.95121 0.89532 1.44775 1.33434 1.52142 1.08405 1.17457 0.94368 0.93187 0.82340 1.19848 1.05135 1.13087 0.94599 1.20431 0.97461 0.97323 0.94188 1.21173 0.99044 1.01700 1.00031 1.17327 0.90755 0.88509 0.89516 1.19526 1.01552 1.18940 1.09419 0.90676 1.25887 0.96219 0.95384 0.96464 1.69852 1.20591 1.30046 1.21202 0.86415 0.81936 0.79477 0.79137 1.18866 1.20403 1.19086 1.20382 1.04167 1.10357 0.96254 0.91224 0.92250 0.90552 0.88113 0.89594 0.89355 0.90668 0.77178 0.89800 0.89767 0.86827 0.90979 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 8.53 37.16 0.32 -1.18 16 2 C -0.04 -0.49 3.87 -26.08 -0.10 -0.59 16 3 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 4 S -0.31 -3.96 22.72 -107.50 -2.44 -6.40 16 5 C -0.06 -0.69 7.46 37.82 0.28 -0.41 16 6 C -0.14 -1.89 5.90 -26.41 -0.16 -2.05 16 7 C 0.16 2.25 2.57 -67.62 -0.17 2.07 16 8 H 0.09 1.27 6.38 -51.93 -0.33 0.94 16 9 N -0.75 -12.82 4.30 -51.91 -0.22 -13.05 16 10 C 0.22 4.85 6.61 -83.86 -0.55 4.30 16 11 C -0.30 -6.64 9.13 -39.08 -0.36 -7.00 16 12 C -0.07 -1.77 10.02 -39.69 -0.40 -2.16 16 13 C -0.20 -5.23 8.70 -38.83 -0.34 -5.57 16 14 C 0.14 3.82 5.57 -106.85 -0.60 3.22 16 15 C -0.46 -12.46 9.05 -37.74 -0.34 -12.81 16 16 H 0.08 1.94 7.91 -52.48 -0.41 1.53 16 17 C 0.08 1.99 5.14 -17.34 -0.09 1.90 16 18 N -0.79 -20.70 10.96 55.55 0.61 -20.09 16 19 Si 0.91 18.82 29.60 -169.99 -5.03 13.79 16 20 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 C -0.29 -7.04 9.63 -38.68 -0.37 -7.41 16 24 H 0.07 0.88 6.20 -51.93 -0.32 0.55 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.38 7.79 -51.93 -0.40 0.98 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.39 6.44 6.40 -40.82 -0.26 6.18 16 32 H 0.08 1.63 6.12 -52.49 -0.32 1.31 16 33 H 0.08 1.79 8.06 -52.49 -0.42 1.36 16 34 H 0.11 3.09 6.15 -52.49 -0.32 2.77 16 35 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 36 H 0.09 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 301.25 15.07 4.54 4.54 Total: -1.00 -27.46 301.25 -10.32 -37.78 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -4.89 Total: 11.12 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -2.88 Total: -27.69 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.39 Total: -33.14 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Atomic # 16 Polarization: -3.96 SS G_CDS: -2.44 Total: -6.40 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.46 -10.32 -37.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313437209.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.059 kcal (2) G-P(sol) polarization free energy of solvation -27.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds