Wall clock time and date at job start Mon Mar 30 2020 06:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 110.84636 * 2 1 4 4 S 1.83615 * 110.69156 * 123.29174 * 2 1 3 5 5 C 1.83958 * 94.79504 * 152.78986 * 4 2 1 6 6 C 1.54259 * 102.57855 * 325.52696 * 5 4 2 7 7 C 1.52338 * 112.58617 * 24.53289 * 6 5 4 8 8 H 1.08997 * 108.86727 * 120.67222 * 7 6 5 9 9 N 1.46496 * 108.86368 * 239.17536 * 7 6 5 10 10 C 1.39680 * 120.00357 * 275.76822 * 9 7 6 11 11 C 1.39339 * 119.95198 * 359.72744 * 10 9 7 12 12 C 1.38479 * 120.42898 * 180.27437 * 11 10 9 13 13 C 1.37695 * 120.31947 * 0.02562 * 12 11 10 14 14 C 1.40745 * 119.89479 * 359.97438 * 13 12 11 15 15 C 1.41406 * 120.20841 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00446 * 204.48318 * 15 14 13 17 17 C 1.39930 * 120.00045 * 24.47672 * 15 14 13 18 18 N 1.30836 * 119.99861 * 17.87109 * 17 15 14 19 19 Si 1.86799 * 120.00387 * 197.86773 * 17 15 14 20 20 H 1.48502 * 109.46872 * 60.00494 * 19 17 15 21 21 H 1.48496 * 109.47061 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47386 * 300.00547 * 19 17 15 23 23 C 1.38282 * 119.95451 * 180.02562 * 10 9 7 24 24 H 1.08995 * 109.46880 * 183.41984 * 1 2 3 25 25 H 1.09003 * 109.47065 * 303.41774 * 1 2 3 26 26 H 1.08994 * 109.47152 * 63.41679 * 1 2 3 27 27 H 1.09003 * 110.78610 * 207.25541 * 5 4 2 28 28 H 1.09005 * 110.78755 * 83.79981 * 5 4 2 29 29 H 1.08999 * 108.87259 * 263.70872 * 6 5 4 30 30 H 1.09004 * 108.86357 * 145.34460 * 6 5 4 31 31 H 0.97006 * 119.99928 * 95.77490 * 9 7 6 32 32 H 1.07998 * 119.78395 * 0.24951 * 11 10 9 33 33 H 1.07997 * 119.83899 * 179.97438 * 12 11 10 34 34 H 1.07997 * 120.04936 * 179.97438 * 13 12 11 35 35 H 0.96996 * 120.00481 * 179.97438 * 18 17 15 36 36 H 1.07996 * 120.15898 * 359.73997 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9179 1.0187 0.0000 4 16 2.1788 -0.9429 1.4358 5 6 3.7582 -1.4063 0.6145 6 6 3.3314 -1.5866 -0.8569 7 6 2.0775 -0.7942 -1.2037 8 1 2.3121 -0.0975 -2.0084 9 7 1.0439 -1.7225 -1.6685 10 6 1.0209 -2.1305 -3.0042 11 6 1.9782 -1.6494 -3.8951 12 6 1.9613 -2.0429 -5.2227 13 6 0.9969 -2.9143 -5.6771 14 6 0.0234 -3.4087 -4.7889 15 6 -0.9703 -4.3035 -5.2486 16 1 -1.9132 -4.3779 -4.7271 17 6 -0.7322 -5.0926 -6.3794 18 7 0.4919 -5.2749 -6.8039 19 14 -2.1619 -5.8860 -7.2827 20 1 -3.0862 -4.8308 -7.7700 21 1 -1.6468 -6.6651 -8.4372 22 1 -2.8891 -6.7931 -6.3589 23 6 0.0445 -3.0064 -3.4419 24 1 -0.3633 -1.0258 0.0613 25 1 -0.3633 0.5660 0.8578 26 1 -0.3633 0.4598 -0.9190 27 1 4.1467 -2.3397 1.0218 28 1 4.4927 -0.6064 0.7090 29 1 3.1427 -2.6441 -1.0422 30 1 4.1458 -1.2583 -1.5028 31 1 0.3754 -2.0539 -1.0486 32 1 2.7380 -0.9649 -3.5480 33 1 2.7075 -1.6637 -5.9051 34 1 0.9875 -3.2180 -6.7135 35 1 0.6571 -5.8222 -7.5875 36 1 -0.6983 -3.3795 -2.7524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313437209.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:54 Heat of formation + Delta-G solvation = 6.971380 kcal Electronic energy + Delta-G solvation = -17376.230059 eV Core-core repulsion = 14757.204509 eV Total energy + Delta-G solvation = -2619.025550 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.10053 -38.21725 -35.55097 -33.64209 -32.90837 -31.65235 -29.13903 -27.25109 -26.72802 -24.35318 -22.68029 -22.44856 -20.60014 -19.25932 -17.82694 -17.30892 -17.16580 -16.60466 -16.23303 -15.49174 -15.20205 -14.76203 -14.70803 -14.40880 -14.09802 -13.91567 -13.60984 -13.34093 -12.96873 -12.85453 -12.72729 -12.46852 -12.29233 -12.13631 -11.99058 -11.78738 -11.59299 -11.19095 -11.08023 -10.82664 -10.47130 -9.32090 -8.74293 -8.60101 -7.92647 -6.31352 0.86781 1.07087 1.29777 1.38149 1.40537 1.50307 1.61627 2.22938 2.71895 2.81591 3.39044 3.80844 3.87952 3.97223 4.06933 4.15034 4.32174 4.47274 4.53779 4.73765 4.77698 4.79947 4.86762 4.92955 5.14378 5.16604 5.17872 5.20199 5.30287 5.43644 5.60577 5.95706 6.03969 6.21974 6.33260 6.63989 6.91466 7.02146 7.04572 7.25028 8.37910 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.036588 B = 0.004418 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.084387 B = 6335.498702 C = 6621.765804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.029 4.029 3 H 0.123 0.877 4 S -0.339 6.339 5 C -0.048 4.048 6 C -0.141 4.141 7 C 0.156 3.844 8 H 0.089 0.911 9 N -0.742 5.742 10 C 0.238 3.762 11 C -0.299 4.299 12 C -0.075 4.075 13 C -0.233 4.233 14 C 0.113 3.887 15 C -0.505 4.505 16 H 0.070 0.930 17 C 0.037 3.963 18 N -0.824 5.824 19 Si 0.980 3.020 20 H -0.261 1.261 21 H -0.267 1.267 22 H -0.261 1.261 23 C -0.311 4.311 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.395 0.605 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.286 0.714 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.275 8.629 10.041 13.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 H 0.141 0.859 4 S -0.113 6.113 5 C -0.196 4.196 6 C -0.181 4.181 7 C 0.048 3.952 8 H 0.107 0.893 9 N -0.376 5.376 10 C 0.137 3.863 11 C -0.322 4.322 12 C -0.094 4.094 13 C -0.254 4.254 14 C 0.110 3.890 15 C -0.535 4.535 16 H 0.089 0.911 17 C -0.178 4.178 18 N -0.450 5.450 19 Si 0.800 3.200 20 H -0.185 1.185 21 H -0.191 1.191 22 H -0.185 1.185 23 C -0.335 4.335 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.232 0.768 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.126 8.381 11.008 14.438 hybrid contribution -0.295 -0.649 -1.424 1.593 sum 3.831 7.733 9.584 12.896 Atomic orbital electron populations 1.21571 0.91400 1.02550 1.03014 1.24149 0.99980 1.00844 0.90808 0.85913 1.88074 1.25267 1.70408 1.27572 1.24151 0.94930 1.05746 0.94821 1.22604 0.98133 1.01740 0.95630 1.21378 0.87146 0.90587 0.96123 0.89294 1.44835 1.34128 1.51944 1.06656 1.17468 0.92949 0.91593 0.84243 1.20161 1.05427 1.12813 0.93830 1.20731 0.96934 0.96223 0.95498 1.21096 1.00923 1.04069 0.99310 1.17678 0.91388 0.89186 0.90733 1.19782 1.01828 1.20539 1.11302 0.91138 1.26727 0.98923 0.95490 0.96611 1.69912 1.22501 1.30761 1.21781 0.85299 0.78206 0.78503 0.77942 1.18533 1.19098 1.18511 1.20483 1.05474 1.11891 0.95689 0.92504 0.90745 0.90830 0.87417 0.87074 0.92016 0.89269 0.76798 0.86609 0.87487 0.88789 0.90309 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.53 71.98 0.61 -2.10 16 2 C -0.03 -0.62 3.87 31.02 0.12 -0.50 16 3 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 4 S -0.34 -7.89 22.72 -56.49 -1.28 -9.17 16 5 C -0.05 -0.93 7.46 72.41 0.54 -0.39 16 6 C -0.14 -3.32 5.90 30.80 0.18 -3.14 16 7 C 0.16 3.94 2.57 45.20 0.12 4.06 16 8 H 0.09 2.28 6.38 -2.39 -0.02 2.26 16 9 N -0.74 -24.29 4.30 -318.15 -1.37 -25.66 16 10 C 0.24 10.16 6.61 38.17 0.25 10.41 16 11 C -0.30 -12.61 9.13 22.59 0.21 -12.40 16 12 C -0.07 -3.51 10.02 22.20 0.22 -3.28 16 13 C -0.23 -12.65 8.70 22.75 0.20 -12.45 16 14 C 0.11 6.31 5.57 -21.31 -0.12 6.19 16 15 C -0.50 -28.25 9.05 23.46 0.21 -28.04 16 16 H 0.07 3.83 7.91 -2.91 -0.02 3.80 16 17 C 0.04 1.95 5.14 85.25 0.44 2.38 16 18 N -0.82 -44.40 10.96 21.82 0.24 -44.16 16 19 Si 0.98 39.26 29.60 68.60 2.03 41.29 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 22 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 23 C -0.31 -15.61 9.63 22.86 0.22 -15.39 16 24 H 0.06 1.36 6.20 -2.39 -0.01 1.35 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.06 1.82 7.79 -2.39 -0.02 1.80 16 30 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.39 12.66 6.40 -92.70 -0.59 12.07 16 32 H 0.12 4.10 6.12 -2.91 -0.02 4.09 16 33 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 34 H 0.09 5.36 6.15 -2.91 -0.02 5.35 16 35 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 36 H 0.09 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -60.99 301.25 3.31 -57.68 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: 0.49 Total: 34.67 kcal Atomic # 6 Polarization: -57.85 SS G_CDS: 3.20 Total: -54.65 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -1.13 Total: -69.82 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -1.28 Total: -9.17 kcal Total: -60.99 3.31 -57.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313437209.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.650 kcal (2) G-P(sol) polarization free energy of solvation -60.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds