Wall clock time and date at job start Mon Mar 30 2020 06:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46909 * 111.00286 * 2 1 4 4 C 1.50700 * 109.46831 * 66.04385 * 3 2 1 5 5 H 1.07999 * 120.00503 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00100 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99626 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00425 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47207 * 59.99973 * 8 6 4 10 10 H 1.48501 * 109.47301 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47340 * 300.00454 * 8 6 4 12 12 C 1.37953 * 111.00535 * 236.04714 * 2 1 3 13 13 N 1.30930 * 125.07408 * 123.92519 * 12 2 1 14 14 C 1.35966 * 109.61108 * 180.02562 * 13 12 2 15 15 C 1.40398 * 107.12085 * 0.02562 * 14 13 12 16 16 C 1.38700 * 119.96977 * 180.02562 * 15 14 13 17 17 C 1.37967 * 119.89454 * 0.02562 * 16 15 14 18 18 C 1.38685 * 120.44475 * 0.02562 * 17 16 15 19 19 C 1.37911 * 120.46638 * 359.97377 * 18 17 16 20 20 F 1.35096 * 120.12648 * 179.97438 * 19 18 17 21 21 N 1.36585 * 125.06257 * 303.95729 * 12 2 1 22 22 C 1.46498 * 126.37009 * 359.97438 * 21 12 2 23 23 H 1.08999 * 109.47334 * 183.95173 * 1 2 3 24 24 H 1.09002 * 109.47306 * 303.95742 * 1 2 3 25 25 H 1.08999 * 109.47065 * 63.95303 * 1 2 3 26 26 H 1.08991 * 109.47402 * 186.04423 * 3 2 1 27 27 H 1.08998 * 109.46737 * 306.04704 * 3 2 1 28 28 H 0.97008 * 119.99847 * 180.02562 * 7 6 4 29 29 H 1.08004 * 120.05103 * 180.02562 * 16 15 14 30 30 H 1.07999 * 119.78141 * 180.27591 * 17 16 15 31 31 H 1.08001 * 119.76731 * 179.97438 * 18 17 16 32 32 H 1.08993 * 109.47387 * 90.00030 * 22 21 12 33 33 H 1.09001 * 109.46592 * 210.00332 * 22 21 12 34 34 H 1.09002 * 109.47093 * 329.99464 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5113 2.0488 6 6 2.0268 3.3495 1.5285 7 7 2.7112 4.0022 0.6146 8 14 1.5818 4.1873 3.1376 9 1 2.1734 3.4304 4.2700 10 1 2.1130 5.5740 3.1372 11 1 0.1045 4.2237 3.2848 12 6 1.9635 -0.7193 -1.0683 13 7 2.7915 -0.2543 -1.9697 14 6 3.0719 -1.2274 -2.8769 15 6 2.3545 -2.3710 -2.4914 16 6 2.4493 -3.5339 -3.2414 17 6 3.2493 -3.5642 -4.3650 18 6 3.9616 -2.4386 -4.7511 19 6 3.8795 -1.2736 -4.0176 20 9 4.5767 -0.1813 -4.3996 21 7 1.6617 -2.0226 -1.3436 22 6 0.7708 -2.8903 -0.5694 23 1 -0.3634 -1.0252 0.0708 24 1 -0.3634 0.5740 0.8524 25 1 -0.3633 0.4513 -0.9233 26 1 3.0797 1.3445 -0.1082 27 1 1.5611 1.9274 -0.8309 28 1 2.9858 4.9184 0.7766 29 1 1.8977 -4.4143 -2.9463 30 1 3.3183 -4.4693 -4.9502 31 1 4.5849 -2.4746 -5.6323 32 1 -0.2462 -2.8001 -0.9510 33 1 1.1024 -3.9247 -0.6598 34 1 0.7934 -2.5919 0.4787 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334483308.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:32 Heat of formation + Delta-G solvation = 47.284287 kcal Electronic energy + Delta-G solvation = -19503.347950 eV Core-core repulsion = 16352.150074 eV Total energy + Delta-G solvation = -3151.197876 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.113 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.44958 -41.86082 -37.73846 -35.81181 -34.02338 -32.57945 -29.92838 -28.83393 -27.45096 -26.95032 -25.49706 -22.92628 -22.06673 -21.24716 -19.66057 -17.52761 -17.29484 -16.32013 -16.06973 -15.92611 -15.24532 -15.03712 -14.99980 -14.66728 -14.13743 -13.91978 -13.42933 -12.91977 -12.81512 -12.72689 -12.05152 -11.92963 -11.61602 -11.55648 -11.29401 -11.06150 -10.84619 -10.65746 -10.12507 -10.00937 -9.59313 -9.46073 -8.84703 -8.44452 -7.92470 -7.30201 -6.07894 -4.13546 1.04841 1.51785 2.63887 3.02522 3.29411 3.34567 3.36232 3.88324 4.14927 4.38489 4.48995 4.66415 4.77408 4.95651 5.14474 5.18104 5.26989 5.38780 5.43547 5.51046 5.66106 5.79672 5.87846 6.11675 6.29639 6.34286 6.46786 6.51621 6.67806 6.90930 7.15545 7.44066 7.59482 7.75700 7.99876 8.32852 8.36232 8.91699 9.50153 11.02151 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.027764 B = 0.005399 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.240363 B = 5184.991876 C = 6082.841367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.459 5.459 3 C 0.210 3.790 4 C -0.526 4.526 5 H 0.065 0.935 6 C 0.062 3.938 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.487 3.513 13 N -0.512 5.512 14 C 0.039 3.961 15 C 0.064 3.936 16 C -0.116 4.116 17 C -0.097 4.097 18 C -0.166 4.166 19 C 0.141 3.859 20 F -0.131 7.131 21 N -0.504 5.504 22 C 0.083 3.917 23 H 0.056 0.944 24 H 0.098 0.902 25 H 0.033 0.967 26 H 0.052 0.948 27 H 0.014 0.986 28 H 0.265 0.735 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.722 -16.323 -6.717 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.181 5.181 3 C 0.087 3.913 4 C -0.565 4.565 5 H 0.083 0.917 6 C -0.142 4.142 7 N -0.524 5.524 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.133 3.867 13 N -0.237 5.237 14 C -0.082 4.082 15 C -0.046 4.046 16 C -0.137 4.137 17 C -0.117 4.117 18 C -0.188 4.188 19 C 0.119 3.881 20 F -0.110 7.110 21 N -0.198 5.198 22 C -0.059 4.059 23 H 0.075 0.925 24 H 0.117 0.883 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.140 0.860 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.244 -15.523 -6.217 17.034 hybrid contribution -0.592 0.245 0.345 0.728 sum -3.836 -15.278 -5.872 16.811 Atomic orbital electron populations 1.22496 0.84769 1.01221 1.03069 1.58799 1.08720 1.20233 1.30331 1.19854 0.97224 0.76805 0.97421 1.21031 1.36613 0.97380 1.01465 0.91720 1.24963 0.94977 0.97126 0.97094 1.69984 1.37035 1.11566 1.33861 0.86502 0.78656 0.78468 0.83413 1.20101 1.21182 1.20187 1.21879 0.93209 0.81727 0.89919 1.71254 1.21144 1.27346 1.03959 1.18912 1.00663 0.91597 0.97078 1.18418 0.98930 0.96764 0.90467 1.19843 1.02680 0.95082 0.96101 1.20502 0.96963 0.97861 0.96359 1.20743 1.04404 0.91800 1.01804 1.16799 0.93785 0.84142 0.93354 1.91495 1.76549 1.52554 1.90358 1.45135 1.40681 1.11151 1.22881 1.22001 0.92836 0.94056 0.97036 0.92518 0.88345 0.94872 0.93036 0.96840 0.92537 0.85960 0.84816 0.84581 0.91150 0.90142 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.09 60.06 0.55 1.10 16 2 N -0.46 -10.03 4.70 -184.01 -0.86 -10.90 16 3 C 0.21 5.61 4.14 -4.97 -0.02 5.59 16 4 C -0.53 -14.45 8.46 -34.44 -0.29 -14.74 16 5 H 0.06 1.69 7.12 -52.49 -0.37 1.32 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.49 10.27 7.08 -319.96 -2.26 8.00 16 13 N -0.51 -12.01 10.08 -11.47 -0.12 -12.13 16 14 C 0.04 0.77 7.20 -84.62 -0.61 0.16 16 15 C 0.06 1.05 6.87 -83.86 -0.58 0.48 16 16 C -0.12 -1.43 10.04 -39.51 -0.40 -1.83 16 17 C -0.10 -1.08 10.03 -39.52 -0.40 -1.47 16 18 C -0.17 -2.19 10.00 -39.54 -0.40 -2.58 16 19 C 0.14 2.49 7.34 -39.10 -0.29 2.21 16 20 F -0.13 -2.53 17.27 2.25 0.04 -2.49 16 21 N -0.50 -8.37 3.23 -122.46 -0.40 -8.77 16 22 C 0.08 0.92 9.34 59.85 0.56 1.48 16 23 H 0.06 0.77 5.08 -51.93 -0.26 0.51 16 24 H 0.10 1.78 6.76 -51.93 -0.35 1.43 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 1.55 7.70 -51.93 -0.40 1.15 16 27 H 0.01 0.40 8.12 -51.93 -0.42 -0.03 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.07 0.65 7.71 -51.93 -0.40 0.25 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.06 7.41 -51.93 -0.38 0.68 16 LS Contribution 293.15 15.07 4.42 4.42 Total: -1.00 -33.22 293.15 -9.28 -42.50 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -3.84 Total: -3.01 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -4.23 Total: 0.04 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.64 Total: -57.60 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.22 -9.28 -42.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334483308.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.780 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds