Wall clock time and date at job start Mon Mar 30 2020 06:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46909 * 111.00286 * 2 1 4 4 C 1.50700 * 109.46831 * 66.04385 * 3 2 1 5 5 H 1.07999 * 120.00503 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00100 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99626 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00425 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47207 * 59.99973 * 8 6 4 10 10 H 1.48501 * 109.47301 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47340 * 300.00454 * 8 6 4 12 12 C 1.37953 * 111.00535 * 236.04714 * 2 1 3 13 13 N 1.30930 * 125.07408 * 123.92519 * 12 2 1 14 14 C 1.35966 * 109.61108 * 180.02562 * 13 12 2 15 15 C 1.40398 * 107.12085 * 0.02562 * 14 13 12 16 16 C 1.38700 * 119.96977 * 180.02562 * 15 14 13 17 17 C 1.37967 * 119.89454 * 0.02562 * 16 15 14 18 18 C 1.38685 * 120.44475 * 0.02562 * 17 16 15 19 19 C 1.37911 * 120.46638 * 359.97377 * 18 17 16 20 20 F 1.35096 * 120.12648 * 179.97438 * 19 18 17 21 21 N 1.36585 * 125.06257 * 303.95729 * 12 2 1 22 22 C 1.46498 * 126.37009 * 359.97438 * 21 12 2 23 23 H 1.08999 * 109.47334 * 183.95173 * 1 2 3 24 24 H 1.09002 * 109.47306 * 303.95742 * 1 2 3 25 25 H 1.08999 * 109.47065 * 63.95303 * 1 2 3 26 26 H 1.08991 * 109.47402 * 186.04423 * 3 2 1 27 27 H 1.08998 * 109.46737 * 306.04704 * 3 2 1 28 28 H 0.97008 * 119.99847 * 180.02562 * 7 6 4 29 29 H 1.08004 * 120.05103 * 180.02562 * 16 15 14 30 30 H 1.07999 * 119.78141 * 180.27591 * 17 16 15 31 31 H 1.08001 * 119.76731 * 179.97438 * 18 17 16 32 32 H 1.08993 * 109.47387 * 90.00030 * 22 21 12 33 33 H 1.09001 * 109.46592 * 210.00332 * 22 21 12 34 34 H 1.09002 * 109.47093 * 329.99464 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5113 2.0488 6 6 2.0268 3.3495 1.5285 7 7 2.7112 4.0022 0.6146 8 14 1.5818 4.1873 3.1376 9 1 2.1734 3.4304 4.2700 10 1 2.1130 5.5740 3.1372 11 1 0.1045 4.2237 3.2848 12 6 1.9635 -0.7193 -1.0683 13 7 2.7915 -0.2543 -1.9697 14 6 3.0719 -1.2274 -2.8769 15 6 2.3545 -2.3710 -2.4914 16 6 2.4493 -3.5339 -3.2414 17 6 3.2493 -3.5642 -4.3650 18 6 3.9616 -2.4386 -4.7511 19 6 3.8795 -1.2736 -4.0176 20 9 4.5767 -0.1813 -4.3996 21 7 1.6617 -2.0226 -1.3436 22 6 0.7708 -2.8903 -0.5694 23 1 -0.3634 -1.0252 0.0708 24 1 -0.3634 0.5740 0.8524 25 1 -0.3633 0.4513 -0.9233 26 1 3.0797 1.3445 -0.1082 27 1 1.5611 1.9274 -0.8309 28 1 2.9858 4.9184 0.7766 29 1 1.8977 -4.4143 -2.9463 30 1 3.3183 -4.4693 -4.9502 31 1 4.5849 -2.4746 -5.6323 32 1 -0.2462 -2.8001 -0.9510 33 1 1.1024 -3.9247 -0.6598 34 1 0.7934 -2.5919 0.4787 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334483308.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:31 Heat of formation + Delta-G solvation = 25.830778 kcal Electronic energy + Delta-G solvation = -19504.278244 eV Core-core repulsion = 16352.150074 eV Total energy + Delta-G solvation = -3152.128170 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.113 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.82024 -43.19141 -39.13176 -37.24465 -35.29382 -34.68395 -31.06955 -30.18397 -29.37704 -28.04661 -27.04412 -24.69163 -23.30718 -22.62822 -21.12931 -19.00250 -18.59411 -18.11194 -17.50134 -17.31925 -16.60573 -16.44640 -16.36056 -16.33585 -15.51159 -15.38990 -14.85414 -14.23056 -14.13395 -13.92251 -13.63549 -13.42536 -12.97008 -12.87891 -12.71175 -12.66769 -12.48099 -12.35270 -12.08674 -11.51802 -11.25847 -10.99139 -10.68615 -10.37269 -9.12026 -8.77654 -8.24331 -6.39790 -0.16371 0.38912 1.36160 1.43287 1.46605 1.55034 1.66456 2.37987 2.69316 2.81823 3.08864 3.25917 3.37707 3.80597 3.90933 4.16732 4.20475 4.33756 4.37406 4.41885 4.49280 4.65604 4.69290 4.83040 4.94792 5.03753 5.18196 5.24362 5.29651 5.41135 5.50365 5.66281 5.78000 5.92818 6.01488 6.52884 6.71123 6.95258 7.30814 8.87449 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.027764 B = 0.005399 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.240363 B = 5184.991876 C = 6082.841367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.462 5.462 3 C 0.237 3.763 4 C -0.536 4.536 5 H 0.081 0.919 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.983 3.017 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.258 1.258 12 C 0.459 3.541 13 N -0.578 5.578 14 C -0.017 4.017 15 C 0.061 3.939 16 C -0.102 4.102 17 C -0.074 4.074 18 C -0.146 4.146 19 C 0.093 3.907 20 F -0.156 7.156 21 N -0.492 5.492 22 C 0.070 3.930 23 H 0.104 0.896 24 H 0.093 0.907 25 H 0.019 0.981 26 H 0.002 0.998 27 H -0.029 1.029 28 H 0.266 0.734 29 H 0.171 0.829 30 H 0.191 0.809 31 H 0.168 0.832 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 -20.397 -6.538 22.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.183 5.183 3 C 0.111 3.889 4 C -0.574 4.574 5 H 0.099 0.901 6 C -0.198 4.198 7 N -0.574 5.574 8 Si 0.806 3.194 9 H -0.190 1.190 10 H -0.212 1.212 11 H -0.182 1.182 12 C 0.104 3.896 13 N -0.305 5.305 14 C -0.136 4.136 15 C -0.049 4.049 16 C -0.122 4.122 17 C -0.093 4.093 18 C -0.166 4.166 19 C 0.072 3.928 20 F -0.135 7.135 21 N -0.186 5.186 22 C -0.070 4.070 23 H 0.123 0.877 24 H 0.112 0.888 25 H 0.038 0.962 26 H 0.020 0.980 27 H -0.011 1.011 28 H 0.075 0.925 29 H 0.188 0.812 30 H 0.208 0.792 31 H 0.185 0.815 32 H 0.114 0.886 33 H 0.136 0.864 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.885 -19.672 -6.048 21.152 hybrid contribution -0.044 1.310 0.086 1.313 sum -4.928 -18.362 -5.962 19.925 Atomic orbital electron populations 1.22608 0.82528 1.04058 1.02110 1.58712 1.10678 1.17275 1.31681 1.19195 0.94061 0.79626 0.95971 1.21406 1.36427 0.97841 1.01710 0.90144 1.26081 0.94508 0.97938 1.01232 1.70174 1.38595 1.11990 1.36615 0.85240 0.79238 0.76845 0.78085 1.18980 1.21186 1.18233 1.21665 0.94141 0.83692 0.90120 1.71025 1.22649 1.30783 1.06043 1.19417 1.03409 0.92709 0.98101 1.18908 0.98317 0.97054 0.90586 1.20478 1.02074 0.94610 0.95068 1.21226 0.94046 0.98553 0.95522 1.21262 1.03595 0.90390 1.01400 1.17487 0.95377 0.85357 0.94594 1.91416 1.77288 1.54150 1.90626 1.45251 1.40678 1.09708 1.22995 1.22457 0.93262 0.94867 0.96384 0.87741 0.88797 0.96208 0.98014 1.01107 0.92512 0.81199 0.79209 0.81483 0.88647 0.86438 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.18 9.09 127.69 1.16 2.34 16 2 N -0.46 -21.25 4.70 -736.07 -3.46 -24.71 16 3 C 0.24 13.74 4.14 85.56 0.35 14.09 16 4 C -0.54 -30.64 8.46 25.60 0.22 -30.43 16 5 H 0.08 4.24 7.12 -2.91 -0.02 4.22 16 6 C 0.00 0.07 5.46 84.65 0.46 0.53 16 7 N -0.93 -59.11 13.29 21.45 0.28 -58.83 16 8 Si 0.98 44.12 29.54 68.60 2.03 46.14 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 12 C 0.46 20.40 7.08 260.49 1.84 22.25 16 13 N -0.58 -29.58 10.08 -190.21 -1.92 -31.49 16 14 C -0.02 -0.70 7.20 39.42 0.28 -0.42 16 15 C 0.06 1.93 6.87 38.72 0.27 2.19 16 16 C -0.10 -2.00 10.04 22.32 0.22 -1.78 16 17 C -0.07 -1.23 10.03 22.31 0.22 -1.00 16 18 C -0.15 -3.44 10.00 22.30 0.22 -3.22 16 19 C 0.09 3.41 7.34 22.58 0.17 3.58 16 20 F -0.16 -6.53 17.27 44.97 0.78 -5.75 16 21 N -0.49 -15.90 3.23 -541.35 -1.75 -17.65 16 22 C 0.07 1.31 9.34 127.77 1.19 2.51 16 23 H 0.10 2.68 5.08 -2.39 -0.01 2.67 16 24 H 0.09 3.42 6.76 -2.39 -0.02 3.40 16 25 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.00 0.11 7.70 -2.39 -0.02 0.09 16 27 H -0.03 -1.87 8.12 -2.39 -0.02 -1.89 16 28 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 29 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 30 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 31 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.10 1.34 7.71 -2.39 -0.02 1.33 16 33 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.81 7.41 -2.39 -0.02 1.80 16 Total: -1.00 -83.68 293.15 3.70 -79.98 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: 1.12 Total: 1.66 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 6.62 Total: 10.65 kcal Atomic # 7 Polarization: -125.84 SS G_CDS: -6.84 Total: -132.67 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.78 Total: -5.75 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -83.68 3.70 -79.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334483308.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.808 kcal (2) G-P(sol) polarization free energy of solvation -83.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds