Wall clock time and date at job start Mon Mar 30 2020 07:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00237 * 2 1 4 4 H 1.48499 * 109.47673 * 240.00300 * 3 2 1 5 5 H 1.48498 * 109.47173 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47023 * 120.00140 * 3 2 1 7 7 C 1.37875 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00204 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00557 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47766 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47368 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47133 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99982 * 180.02562 * 12 11 10 14 14 O 1.21610 * 119.99824 * 359.97438 * 13 12 11 15 15 C 1.47372 * 119.99766 * 179.97438 * 13 12 11 16 16 C 1.47022 * 127.19639 * 0.15361 * 15 13 12 17 17 C 1.34178 * 105.95398 * 180.26341 * 16 15 13 18 18 O 1.34212 * 109.12405 * 359.75797 * 17 16 15 19 19 C 1.33650 * 110.91128 * 0.02562 * 18 17 16 20 20 C 1.50706 * 125.80370 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.49681 * 300.02488 * 20 19 18 22 22 C 1.53002 * 60.02940 * 107.47810 * 21 20 19 23 23 H 0.97000 * 119.99578 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46763 * 59.99526 * 9 7 2 25 25 H 1.09005 * 109.46752 * 300.00373 * 9 7 2 26 26 H 1.09004 * 109.46963 * 59.99529 * 10 9 7 27 27 H 1.08998 * 109.46873 * 300.00552 * 10 9 7 28 28 H 1.08997 * 109.46749 * 60.00050 * 11 10 9 29 29 H 1.08996 * 109.47223 * 300.00436 * 11 10 9 30 30 H 0.96997 * 120.00034 * 359.97438 * 12 11 10 31 31 H 1.08000 * 127.02192 * 0.05342 * 16 15 13 32 32 H 1.08005 * 125.43705 * 179.79467 * 17 16 15 33 33 H 1.08999 * 115.56047 * 154.33935 * 20 19 18 34 34 H 1.09002 * 117.49833 * 214.97915 * 21 20 19 35 35 H 1.09002 * 117.49953 * 359.97438 * 21 20 19 36 36 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 37 37 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0018 11 6 1.4802 -4.9872 -0.0012 12 7 2.4322 -6.1007 -0.0018 13 6 1.9829 -7.3714 -0.0019 14 8 0.7872 -7.5936 -0.0010 15 6 2.9406 -8.4915 -0.0031 16 6 4.4083 -8.4060 -0.0011 17 6 4.8515 -9.6725 -0.0092 18 8 3.7999 -10.5064 -0.0104 19 6 2.6504 -9.8245 -0.0039 20 6 1.2686 -10.4259 -0.0036 21 6 0.8889 -11.3242 -1.1825 22 6 1.1569 -11.9399 0.1923 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8726 -3.6048 0.8877 27 1 2.8712 -3.6040 -0.8922 28 1 0.8526 -5.0447 -0.8905 29 1 0.8545 -5.0450 0.8894 30 1 3.3858 -5.9235 -0.0029 31 1 5.0073 -7.5074 0.0023 32 1 5.8889 -9.9729 -0.0133 33 1 0.4847 -9.8032 0.4275 34 1 -0.1448 -11.2925 -1.5270 35 1 1.6384 -11.4799 -1.9585 36 1 0.2995 -12.3134 0.7523 37 1 2.0829 -12.5004 0.3208 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336935935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:37 Heat of formation + Delta-G solvation = -15.950025 kcal Electronic energy + Delta-G solvation = -18681.749331 eV Core-core repulsion = 15618.976963 eV Total energy + Delta-G solvation = -3062.772368 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.77166 -39.16705 -37.31150 -35.35732 -33.44246 -32.91495 -31.07091 -29.88670 -26.93697 -24.27806 -23.10502 -22.72711 -22.42943 -20.67923 -20.58673 -19.47825 -17.91737 -16.46195 -16.41259 -16.13466 -15.51212 -15.43480 -15.13053 -14.67706 -14.43896 -13.73599 -13.69265 -13.05780 -12.75571 -12.31826 -12.23948 -11.83505 -11.80866 -11.72585 -11.15965 -10.88255 -10.74211 -10.69387 -10.62072 -9.96180 -9.91335 -9.85412 -9.38910 -9.12774 -8.82732 -8.56186 -8.36618 -6.01415 -4.04590 1.21011 1.89212 2.55278 3.32213 3.36904 3.38315 3.39053 3.48774 3.68388 4.12753 4.44549 4.48376 4.67514 4.70732 4.75817 5.05692 5.23931 5.34241 5.35251 5.52099 5.53879 5.75672 5.79443 5.80478 5.83078 5.90731 6.09926 6.18023 6.51494 6.61054 6.81624 6.88061 7.01143 7.63722 7.76594 7.76776 7.97328 8.37682 8.44047 9.01839 9.59480 11.09898 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040314 B = 0.003095 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.387716 B = 9044.793718 C = 9643.589318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.117 3.883 12 N -0.718 5.718 13 C 0.583 3.417 14 O -0.545 6.545 15 C -0.232 4.232 16 C -0.187 4.187 17 C -0.041 4.041 18 O -0.177 6.177 19 C 0.103 3.897 20 C -0.086 4.086 21 C -0.159 4.159 22 C -0.172 4.172 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.398 0.602 31 H 0.159 0.841 32 H 0.208 0.792 33 H 0.153 0.847 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.193 -22.964 -0.365 24.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.005 4.005 12 N -0.368 5.368 13 C 0.370 3.630 14 O -0.425 6.425 15 C -0.237 4.237 16 C -0.206 4.206 17 C -0.107 4.107 18 O -0.073 6.073 19 C 0.050 3.950 20 C -0.104 4.104 21 C -0.196 4.196 22 C -0.209 4.209 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.232 0.768 31 H 0.176 0.824 32 H 0.225 0.775 33 H 0.171 0.829 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.195 -23.271 -0.368 24.360 hybrid contribution 1.208 1.407 0.004 1.854 sum 8.403 -21.863 -0.364 23.425 Atomic orbital electron populations 1.69958 1.06059 1.26802 1.50476 1.25027 0.94863 0.99291 0.95270 0.86637 0.79557 0.83085 0.78579 1.20247 1.21263 1.20251 1.21173 0.92958 0.90972 1.51059 0.92705 1.19024 0.93840 0.90802 0.97673 1.21891 0.99791 0.93342 1.00874 1.21662 0.91828 0.84934 1.02084 1.46000 1.10812 1.05552 1.74424 1.17197 0.87122 0.82207 0.76427 1.90741 1.15924 1.84766 1.51031 1.21209 0.93689 0.93427 1.15340 1.22919 0.92849 0.98478 1.06356 1.23831 0.91422 0.88355 1.07048 1.83701 1.13747 1.38264 1.71596 1.21680 0.85880 0.89148 0.98297 1.20840 0.89981 0.93625 1.05962 1.23053 1.03300 1.01711 0.91560 1.23079 1.03997 0.93831 0.99994 0.92862 0.96253 0.96248 0.92730 0.92724 0.91647 0.91653 0.76835 0.82376 0.77530 0.82932 0.87463 0.88492 0.87707 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 11 C 0.12 2.12 5.67 -4.04 -0.02 2.10 16 12 N -0.72 -11.04 5.55 -61.40 -0.34 -11.38 16 13 C 0.58 9.50 7.81 -12.54 -0.10 9.40 16 14 O -0.54 -10.41 14.93 5.27 0.08 -10.34 16 15 C -0.23 -3.15 6.31 -103.28 -0.65 -3.80 16 16 C -0.19 -1.91 10.60 -37.45 -0.40 -2.31 16 17 C -0.04 -0.36 12.03 29.30 0.35 0.00 16 18 O -0.18 -1.92 10.23 7.67 0.08 -1.84 16 19 C 0.10 1.29 6.86 -34.96 -0.24 1.05 16 20 C -0.09 -0.99 5.62 -91.73 -0.52 -1.50 16 21 C -0.16 -1.46 10.23 -26.73 -0.27 -1.73 16 22 C -0.17 -1.46 10.17 -26.69 -0.27 -1.73 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.40 5.04 7.64 -40.82 -0.31 4.73 16 31 H 0.16 1.25 7.74 -52.49 -0.41 0.84 16 32 H 0.21 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.15 1.98 6.68 -51.93 -0.35 1.64 16 34 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.80 7.96 -51.93 -0.41 0.39 16 LS Contribution 322.37 15.07 4.86 4.86 Total: -1.00 -32.97 322.37 -7.67 -40.64 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.25 Total: 1.78 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -2.81 Total: -14.04 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.40 Total: -37.58 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.16 Total: -12.18 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.97 -7.67 -40.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336935935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.687 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds