Wall clock time and date at job start Mon Mar 30 2020 07:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00237 * 2 1 4 4 H 1.48499 * 109.47673 * 240.00300 * 3 2 1 5 5 H 1.48498 * 109.47173 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47023 * 120.00140 * 3 2 1 7 7 C 1.37875 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00204 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00557 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47766 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47368 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47133 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99982 * 180.02562 * 12 11 10 14 14 O 1.21610 * 119.99824 * 359.97438 * 13 12 11 15 15 C 1.47372 * 119.99766 * 179.97438 * 13 12 11 16 16 C 1.47022 * 127.19639 * 0.15361 * 15 13 12 17 17 C 1.34178 * 105.95398 * 180.26341 * 16 15 13 18 18 O 1.34212 * 109.12405 * 359.75797 * 17 16 15 19 19 C 1.33650 * 110.91128 * 0.02562 * 18 17 16 20 20 C 1.50706 * 125.80370 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.49681 * 300.02488 * 20 19 18 22 22 C 1.53002 * 60.02940 * 107.47810 * 21 20 19 23 23 H 0.97000 * 119.99578 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46763 * 59.99526 * 9 7 2 25 25 H 1.09005 * 109.46752 * 300.00373 * 9 7 2 26 26 H 1.09004 * 109.46963 * 59.99529 * 10 9 7 27 27 H 1.08998 * 109.46873 * 300.00552 * 10 9 7 28 28 H 1.08997 * 109.46749 * 60.00050 * 11 10 9 29 29 H 1.08996 * 109.47223 * 300.00436 * 11 10 9 30 30 H 0.96997 * 120.00034 * 359.97438 * 12 11 10 31 31 H 1.08000 * 127.02192 * 0.05342 * 16 15 13 32 32 H 1.08005 * 125.43705 * 179.79467 * 17 16 15 33 33 H 1.08999 * 115.56047 * 154.33935 * 20 19 18 34 34 H 1.09002 * 117.49833 * 214.97915 * 21 20 19 35 35 H 1.09002 * 117.49953 * 359.97438 * 21 20 19 36 36 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 37 37 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0018 11 6 1.4802 -4.9872 -0.0012 12 7 2.4322 -6.1007 -0.0018 13 6 1.9829 -7.3714 -0.0019 14 8 0.7872 -7.5936 -0.0010 15 6 2.9406 -8.4915 -0.0031 16 6 4.4083 -8.4060 -0.0011 17 6 4.8515 -9.6725 -0.0092 18 8 3.7999 -10.5064 -0.0104 19 6 2.6504 -9.8245 -0.0039 20 6 1.2686 -10.4259 -0.0036 21 6 0.8889 -11.3242 -1.1825 22 6 1.1569 -11.9399 0.1923 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8726 -3.6048 0.8877 27 1 2.8712 -3.6040 -0.8922 28 1 0.8526 -5.0447 -0.8905 29 1 0.8545 -5.0450 0.8894 30 1 3.3858 -5.9235 -0.0029 31 1 5.0073 -7.5074 0.0023 32 1 5.8889 -9.9729 -0.0133 33 1 0.4847 -9.8032 0.4275 34 1 -0.1448 -11.2925 -1.5270 35 1 1.6384 -11.4799 -1.9585 36 1 0.2995 -12.3134 0.7523 37 1 2.0829 -12.5004 0.3208 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336935935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:36 Heat of formation + Delta-G solvation = -36.770188 kcal Electronic energy + Delta-G solvation = -18682.652161 eV Core-core repulsion = 15618.976963 eV Total energy + Delta-G solvation = -3063.675198 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.60143 -40.47587 -38.07649 -36.95394 -35.21904 -34.04096 -32.81340 -30.70270 -28.74975 -25.78166 -24.15664 -23.76575 -23.30660 -22.35983 -21.59606 -20.59863 -18.89083 -18.49367 -17.34301 -17.12969 -16.79221 -16.59116 -16.43198 -16.30621 -15.56372 -15.26376 -14.77019 -14.29664 -13.96798 -13.78033 -13.54200 -13.49683 -13.09348 -12.72236 -12.56497 -12.48163 -12.41737 -11.94224 -11.68773 -11.64037 -11.46111 -11.26289 -10.95709 -10.84066 -10.55188 -10.14054 -9.44375 -8.19734 -6.31544 0.24410 1.12106 1.41520 1.44763 1.52621 1.73491 2.24003 2.26551 2.42988 2.88096 3.13896 3.37922 3.69767 3.77530 3.91882 4.00070 4.15170 4.19024 4.24411 4.52636 4.52878 4.68843 4.74605 4.83984 4.92114 4.96328 5.01622 5.08681 5.14964 5.16393 5.35868 5.42927 5.51368 5.69348 5.83236 6.01202 6.21548 6.55390 6.85615 7.19226 7.38067 8.92321 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040314 B = 0.003095 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.387716 B = 9044.793718 C = 9643.589318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.101 4.101 11 C 0.131 3.869 12 N -0.708 5.708 13 C 0.579 3.421 14 O -0.583 6.583 15 C -0.264 4.264 16 C -0.198 4.198 17 C -0.024 4.024 18 O -0.177 6.177 19 C 0.099 3.901 20 C -0.119 4.119 21 C -0.155 4.155 22 C -0.149 4.149 23 H 0.264 0.736 24 H -0.008 1.008 25 H -0.008 1.008 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.413 0.587 31 H 0.181 0.819 32 H 0.255 0.745 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.113 -23.917 -0.448 26.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.013 4.013 10 C -0.139 4.139 11 C 0.007 3.993 12 N -0.359 5.359 13 C 0.369 3.631 14 O -0.465 6.465 15 C -0.268 4.268 16 C -0.217 4.217 17 C -0.089 4.089 18 O -0.073 6.073 19 C 0.046 3.954 20 C -0.137 4.137 21 C -0.191 4.191 22 C -0.186 4.186 23 H 0.072 0.928 24 H 0.011 0.989 25 H 0.011 0.989 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.250 0.750 31 H 0.198 0.802 32 H 0.271 0.729 33 H 0.146 0.854 34 H 0.132 0.868 35 H 0.119 0.881 36 H 0.138 0.862 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.164 -24.240 -0.450 26.289 hybrid contribution 0.287 1.632 0.032 1.657 sum 10.451 -22.608 -0.418 24.911 Atomic orbital electron populations 1.70110 1.07973 1.27896 1.51582 1.26035 0.95758 1.03595 0.94721 0.85455 0.78186 0.77838 0.79290 1.18982 1.21137 1.18995 1.21658 0.93772 0.92003 1.50660 0.91496 1.18935 0.94409 0.92901 0.95093 1.21598 0.98477 0.91692 1.02140 1.21264 0.91883 0.85325 1.00793 1.45755 1.11145 1.04686 1.74304 1.17653 0.87209 0.82865 0.75416 1.90717 1.17762 1.85332 1.52730 1.21145 0.95085 0.92812 1.17773 1.23190 0.91069 1.00283 1.07188 1.24747 0.92445 0.87530 1.04192 1.83728 1.13721 1.38498 1.71332 1.21820 0.86742 0.89123 0.97718 1.20770 0.89340 0.95125 1.08416 1.23146 1.03833 1.00457 0.91704 1.23180 1.04933 0.91302 0.99154 0.92779 0.98936 0.98930 0.91342 0.91337 0.93085 0.93081 0.74988 0.80185 0.72926 0.85431 0.86762 0.88059 0.86165 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.55 13.29 21.45 0.28 -57.27 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.54 -30.54 9.11 25.60 0.23 -30.31 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.10 -3.99 5.27 30.59 0.16 -3.83 16 11 C 0.13 4.86 5.67 86.38 0.49 5.35 16 12 N -0.71 -21.70 5.55 -466.43 -2.59 -24.28 16 13 C 0.58 19.27 7.81 86.65 0.68 19.95 16 14 O -0.58 -23.44 14.93 -4.06 -0.06 -23.50 16 15 C -0.26 -7.03 6.31 -18.99 -0.12 -7.15 16 16 C -0.20 -3.58 10.60 23.65 0.25 -3.33 16 17 C -0.02 -0.34 12.03 66.89 0.80 0.47 16 18 O -0.18 -3.44 10.23 4.52 0.05 -3.39 16 19 C 0.10 2.44 6.86 25.26 0.17 2.61 16 20 C -0.12 -2.73 5.62 -11.51 -0.06 -2.80 16 21 C -0.15 -2.72 10.23 30.60 0.31 -2.40 16 22 C -0.15 -2.31 10.17 30.62 0.31 -2.00 16 23 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 24 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 25 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 26 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 27 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.41 9.91 7.64 -92.71 -0.71 9.20 16 31 H 0.18 2.28 7.74 -2.91 -0.02 2.25 16 32 H 0.25 0.87 8.06 -2.91 -0.02 0.85 16 33 H 0.13 3.57 6.68 -2.39 -0.02 3.56 16 34 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.10 1.67 8.14 -2.39 -0.02 1.66 16 36 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.11 1.50 7.96 -2.39 -0.02 1.48 16 Total: -1.00 -73.43 322.37 3.91 -69.52 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.36 Total: 14.72 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 3.84 Total: -21.74 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -2.30 Total: -81.55 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.01 Total: -26.89 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -73.43 3.91 -69.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336935935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.748 kcal (2) G-P(sol) polarization free energy of solvation -73.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds