Wall clock time and date at job start Mon Mar 30 2020 06:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37097 * 120.00147 * 2 1 4 4 H 1.08001 * 120.00028 * 204.41928 * 3 2 1 5 5 C 1.38955 * 119.99950 * 24.41089 * 3 2 1 6 6 N 1.31403 * 119.99842 * 12.62338 * 5 3 2 7 7 Si 1.86794 * 119.99870 * 192.62178 * 5 3 2 8 8 H 1.48503 * 109.47383 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.46866 * 119.99874 * 7 5 3 10 10 H 1.48501 * 109.47312 * 239.99744 * 7 5 3 11 11 C 1.34783 * 120.00057 * 179.97438 * 2 1 3 12 12 O 1.21295 * 119.99730 * 180.02562 * 11 2 1 13 13 C 1.50698 * 119.99866 * 0.27747 * 11 2 1 14 14 C 1.50705 * 109.46828 * 179.72434 * 13 11 2 15 15 C 1.32572 * 119.99777 * 125.00549 * 14 13 11 16 16 C 1.47804 * 120.00021 * 179.97438 * 15 14 13 17 17 C 1.39547 * 120.11102 * 359.72470 * 16 15 14 18 18 C 1.37927 * 119.87967 * 179.74588 * 17 16 15 19 19 C 1.38580 * 120.11668 * 0.52637 * 18 17 16 20 20 F 1.35098 * 119.88620 * 179.74453 * 19 18 17 21 21 C 1.38579 * 120.23194 * 359.72443 * 19 18 17 22 22 C 1.37928 * 120.11412 * 0.02562 * 21 19 18 23 23 H 1.08991 * 109.47477 * 265.83563 * 1 2 3 24 24 H 1.08991 * 109.46982 * 25.84336 * 1 2 3 25 25 H 1.09007 * 109.46694 * 145.83709 * 1 2 3 26 26 H 0.97002 * 120.00438 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.47487 * 299.72516 * 13 11 2 28 28 H 1.09001 * 109.46750 * 59.72423 * 13 11 2 29 29 H 1.07997 * 120.00058 * 305.00316 * 14 13 11 30 30 H 1.08005 * 120.00294 * 359.97438 * 15 14 13 31 31 H 1.07997 * 120.06346 * 359.97438 * 17 16 15 32 32 H 1.07998 * 119.94736 * 180.24968 * 18 17 16 33 33 H 1.07999 * 119.94191 * 179.97438 * 21 19 18 34 34 H 1.08000 * 120.05751 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1581 1.2291 -0.3867 5 6 1.5489 2.3369 0.4973 6 7 0.4348 2.2490 1.1884 7 14 2.3241 4.0072 0.1835 8 1 3.5646 3.8352 -0.6146 9 1 1.3691 4.8632 -0.5652 10 1 2.6545 4.6511 1.4802 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3854 -2.4723 -0.0052 14 6 2.3648 -3.6177 -0.0102 15 6 2.2949 -4.5536 0.9261 16 6 3.2551 -5.6773 0.9210 17 6 4.2325 -5.7585 -0.0718 18 6 5.1293 -6.8063 -0.0690 19 6 5.0542 -7.7833 0.9110 20 9 5.9318 -8.8104 0.9062 21 6 4.0822 -7.7102 1.8960 22 6 3.1837 -6.6638 1.9054 23 1 -0.3634 -0.0746 1.0248 24 1 -0.3633 0.9248 -0.4479 25 1 -0.3633 -0.8504 -0.5771 26 1 0.0149 3.0514 1.5359 27 1 0.7587 -2.5340 0.8844 28 1 0.7588 -2.5261 -0.8955 29 1 3.1235 -3.6762 -0.7766 30 1 1.5364 -4.4950 1.6928 31 1 4.2889 -5.0002 -0.8387 32 1 5.8887 -6.8680 -0.8344 33 1 4.0277 -8.4744 2.6572 34 1 2.4264 -6.6080 2.6733 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353740811.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:43 Heat of formation + Delta-G solvation = -37.570827 kcal Electronic energy + Delta-G solvation = -18299.825774 eV Core-core repulsion = 15112.655553 eV Total energy + Delta-G solvation = -3187.170221 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.94558 -39.16226 -38.44733 -35.02187 -34.23831 -31.71388 -31.24863 -30.50099 -27.14991 -26.01378 -24.24336 -23.30237 -22.23775 -19.67508 -18.63103 -17.77988 -16.89028 -16.28496 -16.13925 -15.74304 -15.64101 -14.66650 -14.44792 -14.32749 -13.94661 -13.63681 -13.49777 -12.72153 -12.69899 -12.53934 -12.25820 -11.88034 -11.43180 -11.34634 -11.19806 -11.14038 -10.89544 -10.74041 -10.33504 -10.27075 -9.90326 -9.20545 -9.03442 -8.46491 -7.87825 -7.67620 -6.34148 -3.90448 0.81172 1.18175 2.54267 3.13944 3.24578 3.31500 3.75427 3.88737 4.13447 4.19783 4.60414 4.72799 4.78047 4.99999 5.10642 5.17867 5.22029 5.38759 5.56369 5.80691 5.82725 5.95041 6.00466 6.02561 6.05557 6.23251 6.26525 6.40669 6.78017 6.82146 6.89034 6.97187 7.16912 7.55342 8.13139 8.47042 9.17388 9.40737 9.96690 10.70891 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.043881 B = 0.003279 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.930407 B = 8536.154019 C = 8856.548247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.448 5.448 3 C -0.306 4.306 4 H 0.098 0.902 5 C 0.030 3.970 6 N -0.883 5.883 7 Si 0.925 3.075 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.449 3.551 12 O -0.588 6.588 13 C -0.110 4.110 14 C -0.076 4.076 15 C -0.156 4.156 16 C -0.042 4.042 17 C -0.092 4.092 18 C -0.148 4.148 19 C 0.081 3.919 20 F -0.145 7.145 21 C -0.151 4.151 22 C -0.090 4.090 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.026 0.974 26 H 0.267 0.733 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.176 -15.315 -0.910 15.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.167 5.167 3 C -0.434 4.434 4 H 0.116 0.884 5 C -0.173 4.173 6 N -0.522 5.522 7 Si 0.752 3.248 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.207 1.207 11 C 0.237 3.763 12 O -0.473 6.473 13 C -0.150 4.150 14 C -0.094 4.094 15 C -0.174 4.174 16 C -0.042 4.042 17 C -0.109 4.109 18 C -0.167 4.167 19 C 0.062 3.938 20 F -0.124 7.124 21 C -0.170 4.170 22 C -0.108 4.108 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.658 -15.188 -0.820 15.225 hybrid contribution 0.265 0.755 0.065 0.803 sum 0.923 -14.433 -0.755 14.482 Atomic orbital electron populations 1.21488 0.81262 0.99957 1.00595 1.43607 1.05470 1.04774 1.62823 1.19699 1.00650 0.84146 1.38943 0.88421 1.25350 0.96639 1.00165 0.95161 1.69992 1.19273 1.29533 1.33410 0.85875 0.79197 0.81474 0.78241 1.19214 1.20665 1.20732 1.19947 0.88027 0.84544 0.83771 1.90522 1.13970 1.87146 1.55673 1.20754 0.97825 0.92954 1.03487 1.23127 0.96647 0.92290 0.97348 1.21478 1.00020 0.95179 1.00739 1.19170 0.95528 0.94838 0.94656 1.21282 0.93727 0.97347 0.98582 1.21069 1.01392 0.94866 0.99325 1.17775 0.90921 0.87059 0.98052 1.91473 1.67444 1.57111 1.96363 1.21033 0.96157 1.00617 0.99199 1.21113 0.98485 0.92952 0.98276 0.93004 0.90702 0.95530 0.92306 0.89566 0.89016 0.86516 0.86242 0.84468 0.84824 0.84937 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.40 8.45 59.85 0.51 2.90 16 2 N -0.45 -11.32 3.01 -122.19 -0.37 -11.69 16 3 C -0.31 -8.52 9.24 -14.93 -0.14 -8.66 16 4 H 0.10 2.85 7.45 -52.49 -0.39 2.46 16 5 C 0.03 0.79 5.04 -17.47 -0.09 0.70 16 6 N -0.88 -23.39 10.83 55.50 0.60 -22.79 16 7 Si 0.93 20.66 29.57 -169.99 -5.03 15.63 16 8 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 11 C 0.45 10.69 7.62 -10.98 -0.08 10.60 16 12 O -0.59 -16.09 15.75 5.54 0.09 -16.00 16 13 C -0.11 -1.90 4.76 -29.03 -0.14 -2.04 16 14 C -0.08 -1.20 8.18 -36.21 -0.30 -1.49 16 15 C -0.16 -2.17 9.52 -37.58 -0.36 -2.53 16 16 C -0.04 -0.55 5.87 -105.01 -0.62 -1.16 16 17 C -0.09 -1.17 9.40 -39.21 -0.37 -1.53 16 18 C -0.15 -1.75 10.01 -39.57 -0.40 -2.15 16 19 C 0.08 0.98 7.30 -39.33 -0.29 0.69 16 20 F -0.15 -1.80 17.26 2.25 0.04 -1.76 16 21 C -0.15 -1.66 10.01 -39.57 -0.40 -2.06 16 22 C -0.09 -1.02 9.78 -39.21 -0.38 -1.40 16 23 H 0.05 1.15 7.83 -51.93 -0.41 0.74 16 24 H 0.07 1.72 6.80 -51.93 -0.35 1.37 16 25 H 0.03 0.46 6.60 -51.93 -0.34 0.12 16 26 H 0.27 6.67 8.31 -40.82 -0.34 6.34 16 27 H 0.09 1.37 7.78 -51.93 -0.40 0.96 16 28 H 0.09 1.37 7.40 -51.93 -0.38 0.99 16 29 H 0.12 1.84 6.03 -52.49 -0.32 1.53 16 30 H 0.12 1.48 7.87 -52.48 -0.41 1.07 16 31 H 0.14 1.67 6.16 -52.49 -0.32 1.35 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 299.33 15.07 4.51 4.51 Total: -1.00 -31.12 299.33 -6.94 -38.05 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -3.74 Total: 2.18 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -3.04 Total: -8.13 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.23 Total: -34.48 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.09 Total: -16.00 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.12 -6.94 -38.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353740811.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.482 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds