Wall clock time and date at job start Mon Mar 30 2020 06:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37097 * 120.00147 * 2 1 4 4 H 1.08001 * 120.00028 * 204.41928 * 3 2 1 5 5 C 1.38955 * 119.99950 * 24.41089 * 3 2 1 6 6 N 1.31403 * 119.99842 * 12.62338 * 5 3 2 7 7 Si 1.86794 * 119.99870 * 192.62178 * 5 3 2 8 8 H 1.48503 * 109.47383 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.46866 * 119.99874 * 7 5 3 10 10 H 1.48501 * 109.47312 * 239.99744 * 7 5 3 11 11 C 1.34783 * 120.00057 * 179.97438 * 2 1 3 12 12 O 1.21295 * 119.99730 * 180.02562 * 11 2 1 13 13 C 1.50698 * 119.99866 * 0.27747 * 11 2 1 14 14 C 1.50705 * 109.46828 * 179.72434 * 13 11 2 15 15 C 1.32572 * 119.99777 * 125.00549 * 14 13 11 16 16 C 1.47804 * 120.00021 * 179.97438 * 15 14 13 17 17 C 1.39547 * 120.11102 * 359.72470 * 16 15 14 18 18 C 1.37927 * 119.87967 * 179.74588 * 17 16 15 19 19 C 1.38580 * 120.11668 * 0.52637 * 18 17 16 20 20 F 1.35098 * 119.88620 * 179.74453 * 19 18 17 21 21 C 1.38579 * 120.23194 * 359.72443 * 19 18 17 22 22 C 1.37928 * 120.11412 * 0.02562 * 21 19 18 23 23 H 1.08991 * 109.47477 * 265.83563 * 1 2 3 24 24 H 1.08991 * 109.46982 * 25.84336 * 1 2 3 25 25 H 1.09007 * 109.46694 * 145.83709 * 1 2 3 26 26 H 0.97002 * 120.00438 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.47487 * 299.72516 * 13 11 2 28 28 H 1.09001 * 109.46750 * 59.72423 * 13 11 2 29 29 H 1.07997 * 120.00058 * 305.00316 * 14 13 11 30 30 H 1.08005 * 120.00294 * 359.97438 * 15 14 13 31 31 H 1.07997 * 120.06346 * 359.97438 * 17 16 15 32 32 H 1.07998 * 119.94736 * 180.24968 * 18 17 16 33 33 H 1.07999 * 119.94191 * 179.97438 * 21 19 18 34 34 H 1.08000 * 120.05751 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1581 1.2291 -0.3867 5 6 1.5489 2.3369 0.4973 6 7 0.4348 2.2490 1.1884 7 14 2.3241 4.0072 0.1835 8 1 3.5646 3.8352 -0.6146 9 1 1.3691 4.8632 -0.5652 10 1 2.6545 4.6511 1.4802 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3854 -2.4723 -0.0052 14 6 2.3648 -3.6177 -0.0102 15 6 2.2949 -4.5536 0.9261 16 6 3.2551 -5.6773 0.9210 17 6 4.2325 -5.7585 -0.0718 18 6 5.1293 -6.8063 -0.0690 19 6 5.0542 -7.7833 0.9110 20 9 5.9318 -8.8104 0.9062 21 6 4.0822 -7.7102 1.8960 22 6 3.1837 -6.6638 1.9054 23 1 -0.3634 -0.0746 1.0248 24 1 -0.3633 0.9248 -0.4479 25 1 -0.3633 -0.8504 -0.5771 26 1 0.0149 3.0514 1.5359 27 1 0.7587 -2.5340 0.8844 28 1 0.7588 -2.5261 -0.8955 29 1 3.1235 -3.6762 -0.7766 30 1 1.5364 -4.4950 1.6928 31 1 4.2889 -5.0002 -0.8387 32 1 5.8887 -6.8680 -0.8344 33 1 4.0277 -8.4744 2.6572 34 1 2.4264 -6.6080 2.6733 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353740811.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:43 Heat of formation + Delta-G solvation = -54.577216 kcal Electronic energy + Delta-G solvation = -18300.563226 eV Core-core repulsion = 15112.655553 eV Total energy + Delta-G solvation = -3187.907673 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.89661 -40.44144 -39.93230 -36.76727 -35.62634 -33.66195 -32.14882 -31.71611 -28.65295 -27.64683 -26.02369 -24.27033 -23.30299 -21.08491 -20.04570 -18.87444 -18.71290 -17.80711 -17.31741 -17.01669 -16.58949 -16.34547 -16.06302 -15.84767 -15.32049 -14.59747 -14.48604 -14.25017 -14.04088 -13.65622 -13.54373 -13.45254 -13.18939 -13.09452 -12.66452 -12.57639 -12.38948 -12.15370 -12.08005 -11.76216 -11.00500 -10.98462 -10.32521 -10.09681 -9.64512 -8.94928 -8.33531 -5.98530 -0.18730 0.28902 1.36040 1.40664 1.46752 1.55301 2.06397 2.29345 2.79330 3.09682 3.18147 3.28171 3.71155 3.75456 3.94484 4.09187 4.20681 4.30318 4.39136 4.54267 4.58449 4.73404 4.81904 4.98436 5.02682 5.07168 5.15142 5.25576 5.34330 5.40585 5.45513 5.70604 5.85340 5.94654 6.13121 6.50436 7.18675 7.49921 8.06229 8.69371 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.043881 B = 0.003279 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.930407 B = 8536.154019 C = 8856.548247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.467 5.467 3 C -0.345 4.345 4 H 0.068 0.932 5 C -0.002 4.002 6 N -0.896 5.896 7 Si 0.987 3.013 8 H -0.275 1.275 9 H -0.264 1.264 10 H -0.276 1.276 11 C 0.438 3.562 12 O -0.635 6.635 13 C -0.093 4.093 14 C -0.110 4.110 15 C -0.131 4.131 16 C -0.066 4.066 17 C -0.102 4.102 18 C -0.155 4.155 19 C 0.072 3.928 20 F -0.148 7.148 21 C -0.150 4.150 22 C -0.083 4.083 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.273 0.727 27 H 0.106 0.894 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.159 0.841 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.890 -16.392 -0.164 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.186 5.186 3 C -0.474 4.474 4 H 0.086 0.914 5 C -0.204 4.204 6 N -0.535 5.535 7 Si 0.811 3.189 8 H -0.199 1.199 9 H -0.189 1.189 10 H -0.202 1.202 11 C 0.228 3.772 12 O -0.522 6.522 13 C -0.132 4.132 14 C -0.129 4.129 15 C -0.149 4.149 16 C -0.067 4.067 17 C -0.120 4.120 18 C -0.174 4.174 19 C 0.053 3.947 20 F -0.127 7.127 21 C -0.168 4.168 22 C -0.101 4.101 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.124 0.876 28 H 0.136 0.864 29 H 0.125 0.875 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.176 0.824 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.445 -16.277 -0.075 16.284 hybrid contribution 0.646 0.967 -0.119 1.169 sum 0.201 -15.310 -0.194 15.313 Atomic orbital electron populations 1.21467 0.79234 1.00982 1.00710 1.43902 1.06861 1.04660 1.63134 1.19631 1.00386 0.86358 1.40990 0.91384 1.26061 0.97070 1.02874 0.94399 1.70053 1.19690 1.30666 1.33068 0.84973 0.78352 0.77411 0.78181 1.19946 1.18918 1.20201 1.21120 0.87974 0.86291 0.81805 1.90479 1.16364 1.88156 1.57240 1.20647 0.97736 0.89262 1.05582 1.22975 0.97630 0.93266 0.99013 1.21715 0.99478 0.94212 0.99466 1.19316 0.95984 0.95553 0.95800 1.21380 0.94179 0.97636 0.98817 1.21231 1.01598 0.94660 0.99864 1.18014 0.91216 0.86969 0.98474 1.91468 1.67614 1.57193 1.96399 1.21340 0.95270 1.01009 0.99211 1.21412 0.98720 0.91970 0.97972 0.93778 0.92615 0.90922 0.91721 0.87590 0.86427 0.87540 0.84232 0.84832 0.83533 0.82380 0.82192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.05 8.45 127.77 1.08 6.13 16 2 N -0.47 -23.87 3.01 -658.89 -1.98 -25.86 16 3 C -0.35 -19.78 9.24 84.04 0.78 -19.00 16 4 H 0.07 4.19 7.45 -2.91 -0.02 4.17 16 5 C 0.00 -0.12 5.04 84.93 0.43 0.31 16 6 N -0.90 -47.30 10.83 21.66 0.23 -47.06 16 7 Si 0.99 42.57 29.57 68.60 2.03 44.59 16 8 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 9 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 10 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 11 C 0.44 21.06 7.62 87.66 0.67 21.73 16 12 O -0.63 -35.95 15.75 -3.08 -0.05 -36.00 16 13 C -0.09 -3.06 4.76 29.10 0.14 -2.92 16 14 C -0.11 -3.41 8.18 24.53 0.20 -3.20 16 15 C -0.13 -3.39 9.52 23.65 0.23 -3.17 16 16 C -0.07 -1.63 5.87 -20.12 -0.12 -1.74 16 17 C -0.10 -2.56 9.40 22.51 0.21 -2.34 16 18 C -0.15 -3.54 10.01 22.28 0.22 -3.32 16 19 C 0.07 1.63 7.30 22.43 0.16 1.79 16 20 F -0.15 -3.44 17.26 44.97 0.78 -2.66 16 21 C -0.15 -2.88 10.01 22.28 0.22 -2.66 16 22 C -0.08 -1.64 9.78 22.51 0.22 -1.42 16 23 H 0.04 1.91 7.83 -2.39 -0.02 1.89 16 24 H 0.05 2.54 6.80 -2.39 -0.02 2.53 16 25 H 0.07 2.35 6.60 -2.38 -0.02 2.34 16 26 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 27 H 0.11 3.07 7.78 -2.39 -0.02 3.05 16 28 H 0.12 3.21 7.40 -2.39 -0.02 3.19 16 29 H 0.11 3.45 6.03 -2.91 -0.02 3.43 16 30 H 0.14 2.99 7.87 -2.91 -0.02 2.97 16 31 H 0.13 3.35 6.16 -2.91 -0.02 3.33 16 32 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 34 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -68.84 299.33 6.56 -62.28 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.11 Total: 14.53 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 4.44 Total: -9.82 kcal Atomic # 7 Polarization: -71.17 SS G_CDS: -1.75 Total: -72.92 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.05 Total: -36.00 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.78 Total: -2.66 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -68.84 6.56 -62.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353740811.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.707 kcal (2) G-P(sol) polarization free energy of solvation -68.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds