Wall clock time and date at job start Mon Mar 30 2020 06:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37101 * 119.99938 * 2 1 4 4 H 1.08004 * 120.00054 * 204.32283 * 3 2 1 5 5 C 1.38957 * 120.00067 * 24.32096 * 3 2 1 6 6 N 1.31405 * 119.99702 * 12.94574 * 5 3 2 7 7 Si 1.86793 * 119.99878 * 192.94718 * 5 3 2 8 8 H 1.48505 * 109.47080 * 60.00049 * 7 5 3 9 9 H 1.48504 * 109.47054 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47605 * 299.99894 * 7 5 3 11 11 C 1.34775 * 120.00022 * 180.27687 * 2 1 3 12 12 O 1.21293 * 120.00038 * 180.02562 * 11 2 1 13 13 C 1.50693 * 119.99977 * 359.97438 * 11 2 1 14 14 C 1.50704 * 109.47238 * 180.02562 * 13 11 2 15 15 C 1.32562 * 120.00285 * 124.99973 * 14 13 11 16 16 C 1.47814 * 120.00299 * 179.97438 * 15 14 13 17 17 C 1.39558 * 120.13023 * 180.02562 * 16 15 14 18 18 C 1.37959 * 119.90847 * 180.02562 * 17 16 15 19 19 C 1.38334 * 120.16816 * 359.97438 * 18 17 16 20 20 C 1.38537 * 120.26153 * 0.02562 * 19 18 17 21 21 F 1.35100 * 119.95610 * 180.02562 * 20 19 18 22 22 C 1.38228 * 120.08967 * 359.71331 * 20 19 18 23 23 H 1.08997 * 109.47272 * 265.80279 * 1 2 3 24 24 H 1.09008 * 109.46897 * 25.80632 * 1 2 3 25 25 H 1.09000 * 109.47142 * 145.80282 * 1 2 3 26 26 H 0.96999 * 120.00133 * 180.02562 * 6 5 3 27 27 H 1.08998 * 109.47462 * 300.00321 * 13 11 2 28 28 H 1.09001 * 109.46833 * 60.00789 * 13 11 2 29 29 H 1.08001 * 119.99701 * 305.00248 * 14 13 11 30 30 H 1.08001 * 120.00014 * 0.02562 * 15 14 13 31 31 H 1.07999 * 120.04500 * 359.97438 * 17 16 15 32 32 H 1.07997 * 119.92018 * 180.02562 * 18 17 16 33 33 H 1.08001 * 119.86812 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.08777 * 180.29427 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1586 1.2289 -0.3852 5 6 1.5482 2.3373 0.4956 6 7 0.4365 2.2494 1.1907 7 14 2.3189 4.0082 0.1738 8 1 2.3939 4.2449 -1.2904 9 1 1.4885 5.0659 0.8039 10 1 3.6865 4.0421 0.7514 11 6 2.1389 -1.1672 -0.0056 12 8 3.3518 -1.1672 -0.0052 13 6 1.3854 -2.4722 -0.0114 14 6 2.3647 -3.6177 -0.0164 15 6 2.2950 -4.5535 0.9199 16 6 3.2551 -5.6773 0.9146 17 6 3.1838 -6.6643 1.8988 18 6 4.0826 -7.7109 1.8898 19 6 5.0539 -7.7847 0.9076 20 6 5.1311 -6.8088 -0.0727 21 9 6.0818 -6.8873 -1.0293 22 6 4.2326 -5.7584 -0.0771 23 1 -0.3633 -0.0752 1.0249 24 1 -0.3633 0.9253 -0.4474 25 1 -0.3633 -0.8500 -0.5776 26 1 0.0158 3.0521 1.5363 27 1 0.7590 -2.5341 0.8785 28 1 0.7585 -2.5258 -0.9015 29 1 3.1234 -3.6761 -0.7828 30 1 1.5360 -4.4953 1.6861 31 1 2.4265 -6.6084 2.6668 32 1 4.0273 -8.4749 2.6510 33 1 5.7548 -8.6064 0.9050 34 1 4.2899 -5.0002 -0.8441 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362998850.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:46 Heat of formation + Delta-G solvation = -37.092828 kcal Electronic energy + Delta-G solvation = -18402.807832 eV Core-core repulsion = 15215.658339 eV Total energy + Delta-G solvation = -3187.149493 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.90282 -39.14126 -38.44830 -35.07119 -34.31343 -31.74807 -30.85172 -30.56020 -27.38250 -26.06238 -24.31554 -23.18064 -22.14783 -19.73676 -18.62527 -17.52620 -16.86942 -16.29725 -16.10948 -15.81808 -15.59766 -14.96868 -14.43608 -14.27853 -13.95486 -13.70356 -13.50279 -12.69162 -12.56384 -12.33134 -12.16297 -11.91692 -11.49460 -11.30799 -11.29176 -11.02483 -10.90510 -10.81325 -10.41726 -10.26228 -10.07464 -9.01449 -8.87729 -8.48343 -8.00795 -7.67442 -6.33629 -3.89651 0.83636 1.15642 2.55899 3.18537 3.24032 3.28250 3.74808 3.88936 4.13961 4.19082 4.63189 4.67016 4.91088 5.01044 5.10634 5.11651 5.27499 5.35317 5.54954 5.77319 5.88840 5.93360 5.97368 6.01326 6.12364 6.17321 6.29528 6.41325 6.78821 6.82362 6.88044 6.95107 7.16749 7.55710 8.13044 8.47508 9.17748 9.41107 9.97073 10.71472 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.035702 B = 0.003556 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.074925 B = 7871.467108 C = 8289.816796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.447 5.447 3 C -0.308 4.308 4 H 0.097 0.903 5 C 0.031 3.969 6 N -0.883 5.883 7 Si 0.926 3.074 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.272 1.272 11 C 0.449 3.551 12 O -0.588 6.588 13 C -0.111 4.111 14 C -0.070 4.070 15 C -0.160 4.160 16 C -0.003 4.003 17 C -0.129 4.129 18 C -0.090 4.090 19 C -0.169 4.169 20 C 0.102 3.898 21 F -0.142 7.142 22 C -0.156 4.156 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.026 0.974 26 H 0.268 0.732 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.018 -16.154 0.048 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.166 5.166 3 C -0.436 4.436 4 H 0.115 0.885 5 C -0.172 4.172 6 N -0.522 5.522 7 Si 0.753 3.247 8 H -0.199 1.199 9 H -0.209 1.209 10 H -0.198 1.198 11 C 0.236 3.764 12 O -0.473 6.473 13 C -0.151 4.151 14 C -0.088 4.088 15 C -0.178 4.178 16 C -0.003 4.003 17 C -0.147 4.147 18 C -0.108 4.108 19 C -0.187 4.187 20 C 0.083 3.917 21 F -0.121 7.121 22 C -0.175 4.175 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.496 -15.983 0.108 15.991 hybrid contribution 0.312 0.934 -0.160 0.998 sum 0.808 -15.049 -0.052 15.071 Atomic orbital electron populations 1.21491 0.81255 0.99967 1.00596 1.43581 1.05461 1.04745 1.62784 1.19612 1.00615 0.84164 1.39217 0.88507 1.25339 0.96639 1.00138 0.95106 1.69978 1.19356 1.29740 1.33135 0.85997 0.79073 0.80913 0.78716 1.19908 1.20940 1.19765 1.19917 0.88021 0.84520 0.83896 1.90527 1.13963 1.87120 1.55696 1.20764 0.97813 0.92933 1.03561 1.23181 0.96389 0.92140 0.97120 1.21491 1.00174 0.95209 1.00956 1.18921 0.93894 0.94236 0.93236 1.21315 1.00080 0.94324 0.99003 1.20898 0.94142 0.98124 0.97625 1.21109 1.01726 0.99756 0.96145 1.17611 0.88824 0.96826 0.88461 1.91494 1.62248 1.96227 1.62105 1.21387 0.96050 0.98695 1.01361 0.92982 0.90713 0.95521 0.92195 0.89482 0.88929 0.86505 0.85965 0.85201 0.85154 0.85124 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.41 8.45 59.85 0.51 2.91 16 2 N -0.45 -11.39 3.01 -122.19 -0.37 -11.76 16 3 C -0.31 -8.63 9.24 -14.93 -0.14 -8.77 16 4 H 0.10 2.84 7.45 -52.48 -0.39 2.45 16 5 C 0.03 0.82 5.04 -17.47 -0.09 0.73 16 6 N -0.88 -23.49 10.85 55.50 0.60 -22.88 16 7 Si 0.93 20.78 29.57 -169.99 -5.03 15.75 16 8 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 C 0.45 10.80 7.62 -10.99 -0.08 10.71 16 12 O -0.59 -16.32 15.74 5.55 0.09 -16.23 16 13 C -0.11 -1.94 4.75 -29.04 -0.14 -2.07 16 14 C -0.07 -1.14 8.18 -36.21 -0.30 -1.43 16 15 C -0.16 -2.28 9.52 -37.57 -0.36 -2.64 16 16 C 0.00 -0.04 5.87 -105.02 -0.62 -0.65 16 17 C -0.13 -1.44 9.78 -39.19 -0.38 -1.82 16 18 C -0.09 -0.89 10.03 -39.65 -0.40 -1.29 16 19 C -0.17 -1.85 10.02 -39.44 -0.40 -2.24 16 20 C 0.10 1.35 7.29 -39.47 -0.29 1.06 16 21 F -0.14 -1.97 17.26 2.25 0.04 -1.93 16 22 C -0.16 -2.19 9.38 -39.12 -0.37 -2.56 16 23 H 0.05 1.16 7.83 -51.93 -0.41 0.75 16 24 H 0.07 1.73 6.80 -51.92 -0.35 1.37 16 25 H 0.03 0.46 6.60 -51.93 -0.34 0.12 16 26 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.09 1.39 7.78 -51.93 -0.40 0.98 16 28 H 0.09 1.40 7.41 -51.93 -0.38 1.02 16 29 H 0.12 1.94 6.04 -52.49 -0.32 1.62 16 30 H 0.12 1.53 7.87 -52.49 -0.41 1.11 16 31 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 34 H 0.14 1.96 6.17 -52.49 -0.32 1.64 16 LS Contribution 299.34 15.07 4.51 4.51 Total: -1.00 -31.44 299.34 -6.94 -38.38 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -3.74 Total: 2.22 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -3.04 Total: -8.06 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.23 Total: -34.64 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.09 Total: -16.23 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.44 -6.94 -38.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362998850.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.285 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds