Wall clock time and date at job start Mon Mar 30 2020 06:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47542 * 2 1 4 4 C 1.50702 * 109.46867 * 239.99632 * 2 1 3 5 5 H 1.08000 * 120.00238 * 270.43944 * 4 2 1 6 6 C 1.37874 * 119.99805 * 90.44480 * 4 2 1 7 7 N 1.31515 * 119.99939 * 175.05109 * 6 4 2 8 8 Si 1.86804 * 120.00143 * 355.05151 * 6 4 2 9 9 H 1.48496 * 109.47061 * 92.18568 * 8 6 4 10 10 H 1.48499 * 109.47228 * 212.18965 * 8 6 4 11 11 H 1.48504 * 109.46874 * 332.18880 * 8 6 4 12 12 N 1.46901 * 109.46884 * 120.00095 * 2 1 3 13 13 C 1.46901 * 111.00037 * 275.93010 * 12 2 1 14 14 H 1.09000 * 108.60968 * 12.56243 * 13 12 2 15 15 C 1.51871 * 108.65888 * 130.59539 * 13 12 2 16 16 C 1.53531 * 108.97011 * 181.36515 * 15 13 12 17 17 S 1.81618 * 107.28015 * 287.30013 * 16 15 13 18 18 C 1.76470 * 102.60590 * 46.41908 * 17 16 15 19 19 C 1.39628 * 117.71116 * 167.19133 * 18 17 16 20 20 C 1.37744 * 120.62444 * 179.54519 * 19 18 17 21 21 C 1.38344 * 119.50721 * 359.88434 * 20 19 18 22 22 C 1.37763 * 120.01186 * 0.32973 * 21 20 19 23 23 C 1.38021 * 122.25706 * 346.98580 * 18 17 16 24 24 H 1.09001 * 109.47184 * 179.90256 * 1 2 3 25 25 H 1.08999 * 109.47167 * 59.90157 * 1 2 3 26 26 H 1.09002 * 109.46959 * 299.90356 * 1 2 3 27 27 H 0.97000 * 120.00060 * 179.97438 * 7 6 4 28 28 H 1.00900 * 111.00288 * 151.97915 * 12 2 1 29 29 H 1.09000 * 109.55532 * 301.21243 * 15 13 12 30 30 H 1.09000 * 109.55311 * 61.51935 * 15 13 12 31 31 H 1.09006 * 109.89474 * 46.74591 * 16 15 13 32 32 H 1.09006 * 109.89736 * 167.85706 * 16 15 13 33 33 H 1.07997 * 119.69072 * 359.51992 * 19 18 17 34 34 H 1.07998 * 120.24389 * 179.85808 * 20 19 18 35 35 H 1.07999 * 119.99550 * 180.30233 * 21 20 19 36 36 H 1.08000 * 119.46520 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.2055 -1.7762 -1.2058 6 6 2.2708 0.0001 -2.3877 7 7 2.8005 -0.6007 -3.4308 8 14 1.8415 1.8160 -2.4740 9 1 3.0251 2.6235 -2.0842 10 1 1.4394 2.1643 -3.8604 11 1 0.7185 2.1038 -1.5458 12 7 2.0196 -0.6925 1.1994 13 6 2.0615 0.2170 2.3523 14 1 1.5118 1.1238 2.1000 15 6 1.3748 -0.4564 3.5276 16 6 1.3842 0.5020 4.7271 17 16 3.0875 0.5644 5.3544 18 6 4.0340 0.7686 3.8791 19 6 5.3768 1.1272 4.0136 20 6 6.1734 1.2934 2.9022 21 6 5.6347 1.0999 1.6427 22 6 4.3091 0.7504 1.5064 23 6 3.4912 0.5823 2.6239 24 1 -0.3633 -1.0277 -0.0017 25 1 -0.3633 0.5154 -0.8891 26 1 -0.3633 0.5123 0.8909 27 1 2.9680 -0.1009 -4.2451 28 1 2.9242 -1.1077 1.0334 29 1 0.3456 -0.6962 3.2604 30 1 1.9085 -1.3707 3.7870 31 1 1.0690 1.4962 4.4100 32 1 0.7161 0.1304 5.5041 33 1 5.7946 1.2761 4.9982 34 1 7.2106 1.5730 3.0133 35 1 6.2534 1.2234 0.7661 36 1 3.8977 0.6020 0.5189 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381491959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:25 Heat of formation + Delta-G solvation = 23.624009 kcal Electronic energy + Delta-G solvation = -17968.992603 eV Core-core repulsion = 15350.689165 eV Total energy + Delta-G solvation = -2618.303438 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.56185 -36.73810 -34.17500 -32.07685 -30.76124 -30.57129 -28.70675 -25.63547 -24.58358 -22.84727 -22.42062 -20.21640 -19.87473 -17.70524 -16.99727 -15.87465 -15.51319 -15.20730 -14.84817 -14.23949 -13.91899 -13.60953 -13.14905 -13.05017 -12.68974 -12.57967 -12.52132 -12.25320 -11.93268 -11.36070 -11.21373 -11.13124 -10.75401 -10.64667 -10.52411 -10.34225 -9.98363 -9.75901 -9.49456 -9.09500 -8.71056 -8.66653 -7.60818 -7.26038 -6.19617 -4.20592 1.36715 1.50931 1.70101 2.45886 3.17407 3.28394 3.30657 3.84902 4.29967 4.66500 4.79326 4.93845 5.06717 5.12858 5.19799 5.32575 5.45759 5.57726 5.61857 5.65179 5.83105 5.98150 6.11462 6.18833 6.28314 6.34306 6.43459 6.56520 6.62099 6.74497 6.79087 6.82111 7.10525 7.31636 7.51920 7.82812 8.27260 8.54130 8.90122 9.43798 10.93055 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.022440 B = 0.007227 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.471274 B = 3873.479114 C = 4663.065440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.180 3.820 3 H 0.003 0.997 4 C -0.522 4.522 5 H 0.081 0.919 6 C 0.076 3.924 7 N -0.892 5.892 8 Si 0.865 3.135 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.259 1.259 12 N -0.672 5.672 13 C 0.117 3.883 14 H 0.074 0.926 15 C -0.104 4.104 16 C -0.101 4.101 17 S -0.143 6.143 18 C -0.071 4.071 19 C -0.108 4.108 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.106 4.106 23 C -0.097 4.097 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.018 0.982 27 H 0.265 0.735 28 H 0.347 0.653 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 4.566 14.778 15.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.071 3.929 3 H 0.021 0.979 4 C -0.560 4.560 5 H 0.099 0.901 6 C -0.127 4.127 7 N -0.530 5.530 8 Si 0.692 3.308 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.184 1.184 12 N -0.305 5.305 13 C 0.006 3.994 14 H 0.092 0.908 15 C -0.144 4.144 16 C -0.250 4.250 17 S 0.099 5.901 18 C -0.184 4.184 19 C -0.131 4.131 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.125 4.125 23 C -0.104 4.104 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.075 0.925 28 H 0.168 0.832 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.279 4.225 15.924 16.525 hybrid contribution 0.241 1.689 -1.831 2.503 sum 1.520 5.914 14.093 15.359 Atomic orbital electron populations 1.21958 0.98141 1.00662 0.98063 1.19645 0.92383 0.92344 0.88488 0.97906 1.21042 1.44279 0.96928 0.93757 0.90119 1.24967 0.94081 0.97881 0.95740 1.69898 1.42561 1.36783 1.03714 0.87064 0.79719 0.86208 0.77796 1.20373 1.21168 1.18352 1.60839 1.33286 1.31983 1.04351 1.20285 0.89695 0.95854 0.93575 0.90790 1.21596 1.02755 0.97843 0.92175 1.23819 0.94899 1.04035 1.02239 1.85211 1.02584 1.92110 1.10244 1.21229 0.97117 1.04982 0.95116 1.20806 0.92092 1.01238 0.98938 1.20998 0.99402 1.00302 0.92367 1.21123 0.95460 0.99789 0.97464 1.21751 0.93965 0.97358 0.99470 1.20464 0.97397 1.00564 0.91954 0.92838 0.93690 0.96278 0.92505 0.83196 0.89426 0.90266 0.89387 0.87265 0.86013 0.85801 0.85759 0.84044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.05 37.16 0.34 -2.40 16 2 C 0.18 4.02 0.92 -68.86 -0.06 3.96 16 3 H 0.00 0.08 4.90 -51.93 -0.25 -0.18 16 4 C -0.52 -13.87 8.83 -34.44 -0.30 -14.18 16 5 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 7 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 8 Si 0.87 20.63 26.32 -169.99 -4.47 16.16 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.26 -5.91 5.79 56.52 0.33 -5.59 16 12 N -0.67 -13.26 5.81 -103.12 -0.60 -13.86 16 13 C 0.12 1.97 2.13 -69.76 -0.15 1.82 16 14 H 0.07 1.31 7.06 -51.93 -0.37 0.95 16 15 C -0.10 -1.47 5.39 -27.03 -0.15 -1.62 16 16 C -0.10 -1.21 6.53 37.43 0.24 -0.96 16 17 S -0.14 -1.92 21.99 -107.50 -2.36 -4.28 16 18 C -0.07 -1.10 6.04 -39.14 -0.24 -1.34 16 19 C -0.11 -1.51 9.65 -39.24 -0.38 -1.89 16 20 C -0.11 -1.50 10.06 -39.72 -0.40 -1.90 16 21 C -0.12 -1.83 10.03 -39.72 -0.40 -2.23 16 22 C -0.11 -1.88 8.51 -39.28 -0.33 -2.21 16 23 C -0.10 -1.64 5.45 -104.55 -0.57 -2.21 16 24 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.04 0.97 6.42 -51.93 -0.33 0.64 16 26 H 0.02 0.34 7.78 -51.93 -0.40 -0.06 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.35 7.17 6.60 -39.29 -0.26 6.91 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.08 1.17 8.03 -51.93 -0.42 0.75 16 31 H 0.09 1.03 8.08 -51.93 -0.42 0.61 16 32 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.12 1.46 8.05 -52.49 -0.42 1.04 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.14 2.87 5.57 -52.49 -0.29 2.57 16 LS Contribution 295.55 15.07 4.45 4.45 Total: -1.00 -28.19 295.55 -9.62 -37.81 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -4.92 Total: 8.30 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -2.50 Total: -23.15 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.17 Total: -39.30 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.47 Total: 16.16 kcal Atomic # 16 Polarization: -1.92 SS G_CDS: -2.36 Total: -4.28 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.19 -9.62 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381491959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.438 kcal (2) G-P(sol) polarization free energy of solvation -28.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds