Wall clock time and date at job start Mon Mar 30 2020 06:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47542 * 2 1 4 4 C 1.50702 * 109.46867 * 239.99632 * 2 1 3 5 5 H 1.08000 * 120.00238 * 270.43944 * 4 2 1 6 6 C 1.37874 * 119.99805 * 90.44480 * 4 2 1 7 7 N 1.31515 * 119.99939 * 175.05109 * 6 4 2 8 8 Si 1.86804 * 120.00143 * 355.05151 * 6 4 2 9 9 H 1.48496 * 109.47061 * 92.18568 * 8 6 4 10 10 H 1.48499 * 109.47228 * 212.18965 * 8 6 4 11 11 H 1.48504 * 109.46874 * 332.18880 * 8 6 4 12 12 N 1.46901 * 109.46884 * 120.00095 * 2 1 3 13 13 C 1.46901 * 111.00037 * 275.93010 * 12 2 1 14 14 H 1.09000 * 108.60968 * 12.56243 * 13 12 2 15 15 C 1.51871 * 108.65888 * 130.59539 * 13 12 2 16 16 C 1.53531 * 108.97011 * 181.36515 * 15 13 12 17 17 S 1.81618 * 107.28015 * 287.30013 * 16 15 13 18 18 C 1.76470 * 102.60590 * 46.41908 * 17 16 15 19 19 C 1.39628 * 117.71116 * 167.19133 * 18 17 16 20 20 C 1.37744 * 120.62444 * 179.54519 * 19 18 17 21 21 C 1.38344 * 119.50721 * 359.88434 * 20 19 18 22 22 C 1.37763 * 120.01186 * 0.32973 * 21 20 19 23 23 C 1.38021 * 122.25706 * 346.98580 * 18 17 16 24 24 H 1.09001 * 109.47184 * 179.90256 * 1 2 3 25 25 H 1.08999 * 109.47167 * 59.90157 * 1 2 3 26 26 H 1.09002 * 109.46959 * 299.90356 * 1 2 3 27 27 H 0.97000 * 120.00060 * 179.97438 * 7 6 4 28 28 H 1.00900 * 111.00288 * 151.97915 * 12 2 1 29 29 H 1.09000 * 109.55532 * 301.21243 * 15 13 12 30 30 H 1.09000 * 109.55311 * 61.51935 * 15 13 12 31 31 H 1.09006 * 109.89474 * 46.74591 * 16 15 13 32 32 H 1.09006 * 109.89736 * 167.85706 * 16 15 13 33 33 H 1.07997 * 119.69072 * 359.51992 * 19 18 17 34 34 H 1.07998 * 120.24389 * 179.85808 * 20 19 18 35 35 H 1.07999 * 119.99550 * 180.30233 * 21 20 19 36 36 H 1.08000 * 119.46520 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.2055 -1.7762 -1.2058 6 6 2.2708 0.0001 -2.3877 7 7 2.8005 -0.6007 -3.4308 8 14 1.8415 1.8160 -2.4740 9 1 3.0251 2.6235 -2.0842 10 1 1.4394 2.1643 -3.8604 11 1 0.7185 2.1038 -1.5458 12 7 2.0196 -0.6925 1.1994 13 6 2.0615 0.2170 2.3523 14 1 1.5118 1.1238 2.1000 15 6 1.3748 -0.4564 3.5276 16 6 1.3842 0.5020 4.7271 17 16 3.0875 0.5644 5.3544 18 6 4.0340 0.7686 3.8791 19 6 5.3768 1.1272 4.0136 20 6 6.1734 1.2934 2.9022 21 6 5.6347 1.0999 1.6427 22 6 4.3091 0.7504 1.5064 23 6 3.4912 0.5823 2.6239 24 1 -0.3633 -1.0277 -0.0017 25 1 -0.3633 0.5154 -0.8891 26 1 -0.3633 0.5123 0.8909 27 1 2.9680 -0.1009 -4.2451 28 1 2.9242 -1.1077 1.0334 29 1 0.3456 -0.6962 3.2604 30 1 1.9085 -1.3707 3.7870 31 1 1.0690 1.4962 4.4100 32 1 0.7161 0.1304 5.5041 33 1 5.7946 1.2761 4.9982 34 1 7.2106 1.5730 3.0133 35 1 6.2534 1.2234 0.7661 36 1 3.8977 0.6020 0.5189 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381491959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:25 Heat of formation + Delta-G solvation = 6.956034 kcal Electronic energy + Delta-G solvation = -17969.715380 eV Core-core repulsion = 15350.689165 eV Total energy + Delta-G solvation = -2619.026215 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.82055 -38.13885 -35.75459 -33.93967 -32.09028 -31.71438 -30.21445 -27.40581 -26.11819 -23.98276 -23.60838 -21.73540 -21.42256 -19.18010 -18.69781 -17.24825 -16.79484 -16.51947 -16.28985 -15.58474 -15.50295 -14.95844 -14.58179 -14.50901 -14.18789 -13.97788 -13.77522 -13.60744 -13.25506 -13.01438 -12.82788 -12.50920 -12.32942 -12.27800 -12.10899 -11.72891 -11.61195 -11.20152 -10.92379 -10.79458 -10.62120 -9.95975 -9.14710 -8.34437 -8.34377 -6.38971 0.18947 0.31150 0.65467 1.26609 1.31164 1.40706 1.40785 2.27748 2.65387 2.99041 3.38861 3.59189 3.80801 3.98954 4.06768 4.15347 4.25541 4.36599 4.43114 4.52574 4.56874 4.73228 4.77758 4.84821 4.95452 4.96413 5.00577 5.02655 5.24382 5.28143 5.44724 5.47977 5.57174 5.66990 5.92912 5.98710 6.45628 6.62612 6.76280 7.29486 8.82137 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.022440 B = 0.007227 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.471274 B = 3873.479114 C = 4663.065440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.187 3.813 3 H -0.001 1.001 4 C -0.519 4.519 5 H 0.037 0.963 6 C 0.023 3.977 7 N -0.941 5.941 8 Si 0.926 3.074 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.239 1.239 12 N -0.672 5.672 13 C 0.118 3.882 14 H 0.067 0.933 15 C -0.098 4.098 16 C -0.095 4.095 17 S -0.129 6.129 18 C -0.083 4.083 19 C -0.108 4.108 20 C -0.100 4.100 21 C -0.129 4.129 22 C -0.131 4.131 23 C -0.113 4.113 24 H 0.048 0.952 25 H 0.038 0.962 26 H 0.048 0.952 27 H 0.266 0.734 28 H 0.338 0.662 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.132 0.868 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 6.268 17.581 18.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.078 3.922 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.056 0.944 6 C -0.176 4.176 7 N -0.581 5.581 8 Si 0.750 3.250 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.162 1.162 12 N -0.303 5.303 13 C 0.008 3.992 14 H 0.085 0.915 15 C -0.137 4.137 16 C -0.244 4.244 17 S 0.112 5.888 18 C -0.196 4.196 19 C -0.131 4.131 20 C -0.120 4.120 21 C -0.149 4.149 22 C -0.151 4.151 23 C -0.120 4.120 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.157 0.843 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.177 0.823 35 H 0.149 0.851 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.983 5.928 18.762 19.701 hybrid contribution 0.398 1.071 -2.625 2.863 sum 1.381 6.999 16.137 17.643 Atomic orbital electron populations 1.21863 0.96618 1.00759 0.99187 1.19478 0.93366 0.91561 0.87758 0.98321 1.21227 1.43602 0.95191 0.95719 0.94432 1.25739 0.94070 1.02455 0.95289 1.70040 1.44648 1.38792 1.04576 0.86084 0.80155 0.80682 0.78084 1.19918 1.21056 1.16222 1.60835 1.32693 1.32470 1.04288 1.20360 0.90368 0.95190 0.93248 0.91481 1.21506 1.02508 0.97805 0.91916 1.23890 0.94609 1.03923 1.01971 1.85155 1.03162 1.91782 1.08674 1.21509 0.98290 1.04469 0.95375 1.21205 0.91574 1.00017 1.00286 1.21361 1.00961 0.98521 0.91124 1.21311 0.94718 0.99850 0.99027 1.21592 0.95441 0.99767 0.98331 1.20401 0.97174 1.01899 0.92492 0.93314 0.94325 0.93281 0.92456 0.84305 0.88739 0.91005 0.88671 0.84193 0.83460 0.82254 0.85055 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 9.05 71.98 0.65 -4.51 16 2 C 0.19 8.47 0.92 44.17 0.04 8.51 16 3 H 0.00 -0.04 4.90 -2.39 -0.01 -0.05 16 4 C -0.52 -28.75 8.83 25.60 0.23 -28.52 16 5 H 0.04 2.35 8.06 -2.91 -0.02 2.33 16 6 C 0.02 1.31 5.47 84.65 0.46 1.77 16 7 N -0.94 -57.52 13.96 21.45 0.30 -57.22 16 8 Si 0.93 43.10 26.32 68.60 1.81 44.91 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.24 -10.25 5.79 99.48 0.58 -9.68 16 12 N -0.67 -26.91 5.81 -480.15 -2.79 -29.70 16 13 C 0.12 3.91 2.13 43.59 0.09 4.00 16 14 H 0.07 2.29 7.06 -2.39 -0.02 2.28 16 15 C -0.10 -2.56 5.39 30.40 0.16 -2.40 16 16 C -0.10 -1.96 6.53 72.16 0.47 -1.49 16 17 S -0.13 -3.08 21.99 -56.49 -1.24 -4.32 16 18 C -0.08 -2.41 6.04 22.55 0.14 -2.27 16 19 C -0.11 -2.72 9.65 22.49 0.22 -2.51 16 20 C -0.10 -2.46 10.06 22.18 0.22 -2.23 16 21 C -0.13 -3.92 10.03 22.18 0.22 -3.70 16 22 C -0.13 -4.75 8.51 22.46 0.19 -4.56 16 23 C -0.11 -3.74 5.45 -19.82 -0.11 -3.85 16 24 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.04 1.60 6.42 -2.39 -0.02 1.59 16 26 H 0.05 1.70 7.78 -2.39 -0.02 1.68 16 27 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 28 H 0.34 14.63 6.60 -89.69 -0.59 14.03 16 29 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.07 2.00 8.03 -2.39 -0.02 1.98 16 31 H 0.09 1.89 8.08 -2.38 -0.02 1.87 16 32 H 0.14 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.15 2.94 8.05 -2.91 -0.02 2.92 16 34 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.11 4.56 5.57 -2.91 -0.02 4.54 16 Total: -1.00 -62.98 295.55 1.42 -61.56 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.36 Total: 26.54 kcal Atomic # 6 Polarization: -44.75 SS G_CDS: 2.99 Total: -41.76 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -2.49 Total: -86.92 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.81 Total: 44.91 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -1.24 Total: -4.32 kcal Total: -62.98 1.42 -61.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381491959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.513 kcal (2) G-P(sol) polarization free energy of solvation -62.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds