Wall clock time and date at job start Mon Mar 30 2020 07:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35685 * 116.99858 * 2 1 4 4 C 1.38919 * 119.68201 * 180.02562 * 3 2 1 5 5 C 1.38378 * 119.10775 * 180.02562 * 4 3 2 6 6 C 1.38826 * 118.48569 * 359.97438 * 5 4 3 7 7 C 1.50707 * 120.35371 * 179.97438 * 6 5 4 8 8 H 1.08998 * 110.27162 * 340.66135 * 7 6 5 9 9 C 1.54943 * 110.30691 * 102.85591 * 7 6 5 10 10 C 1.55310 * 100.94038 * 155.35828 * 9 7 6 11 11 C 1.54376 * 102.25223 * 325.86488 * 10 9 7 12 12 C 1.53005 * 109.83123 * 140.86823 * 11 10 9 13 13 C 1.50691 * 109.83287 * 261.84115 * 11 10 9 14 14 H 1.08000 * 119.99993 * 359.58816 * 13 11 10 15 15 C 1.37878 * 120.00308 * 179.58776 * 13 11 10 16 16 N 1.31516 * 119.99910 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00179 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46831 * 60.00367 * 17 15 13 19 19 H 1.48504 * 109.46849 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47133 * 300.00006 * 17 15 13 21 21 O 1.43239 * 107.58683 * 21.35925 * 11 10 9 22 22 C 1.38047 * 119.29165 * 359.97438 * 6 5 4 23 23 N 1.31960 * 120.83299 * 0.28440 * 22 6 5 24 24 H 1.08998 * 109.47180 * 299.99875 * 1 2 3 25 25 H 1.09002 * 109.47137 * 60.00345 * 1 2 3 26 26 H 1.08996 * 109.46880 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.44504 * 359.97438 * 4 3 2 28 28 H 1.08003 * 120.75613 * 180.02562 * 5 4 3 29 29 H 1.09004 * 111.12565 * 273.27398 * 9 7 6 30 30 H 1.09003 * 111.13133 * 37.44270 * 9 7 6 31 31 H 1.09000 * 110.84773 * 207.67217 * 10 9 7 32 32 H 1.09005 * 110.84525 * 84.05755 * 10 9 7 33 33 H 1.09009 * 109.47188 * 300.41571 * 12 11 10 34 34 H 1.09006 * 109.46995 * 60.40897 * 12 11 10 35 35 H 1.08997 * 109.47215 * 180.41779 * 12 11 10 36 36 H 0.97003 * 120.00346 * 179.97438 * 16 15 13 37 37 H 1.08002 * 119.58076 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5132 0.0000 6 6 3.2504 3.6492 0.0005 7 6 3.8767 5.0199 0.0017 8 1 4.9110 4.9622 0.3406 9 6 3.8066 5.6444 -1.4146 10 6 3.8668 7.1582 -1.0726 11 6 3.1017 7.2221 0.2668 12 6 3.7865 8.2145 1.2088 13 6 1.6769 7.6472 0.0218 14 1 1.3419 7.8599 -0.9826 15 6 0.8008 7.7645 1.0800 16 7 1.2086 7.5050 2.3031 17 14 -0.9652 8.2921 0.7764 18 1 -1.6245 7.3167 -0.1286 19 1 -1.6963 8.3406 2.0682 20 1 -0.9789 9.6377 0.1485 21 8 3.1256 5.9105 0.8419 22 6 1.8770 3.5097 0.0000 23 7 1.3186 2.3141 0.0045 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 4.0229 0.3695 -0.0005 28 1 5.1254 2.5948 -0.0008 29 1 4.6623 5.3439 -2.0192 30 1 2.8694 5.3906 -1.9100 31 1 3.3615 7.7489 -1.8366 32 1 4.8985 7.4865 -0.9461 33 1 4.8133 7.8956 1.3885 34 1 3.7880 9.2052 0.7542 35 1 3.2461 8.2495 2.1548 36 1 0.5924 7.5880 3.0477 37 1 1.2517 4.3903 0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383769532.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:30 Heat of formation + Delta-G solvation = -65.827697 kcal Electronic energy + Delta-G solvation = -20212.094592 eV Core-core repulsion = 17147.159366 eV Total energy + Delta-G solvation = -3064.935226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.65458 -40.14374 -38.67102 -35.08793 -33.64684 -32.69837 -32.53627 -30.48741 -28.23810 -27.28088 -26.21316 -24.39126 -23.49558 -21.89111 -21.17302 -19.34220 -18.79176 -17.99284 -16.97309 -16.91138 -16.41557 -16.27970 -15.45536 -15.29160 -15.08513 -14.63137 -14.46901 -14.13617 -13.99188 -13.57847 -13.41015 -13.16246 -12.79735 -12.76512 -12.60756 -12.36633 -12.21860 -12.08207 -11.93113 -11.64844 -11.38230 -10.93541 -10.77221 -10.56892 -10.53035 -9.77092 -9.27212 -7.98923 -6.20466 0.20258 0.32700 1.40402 1.42381 1.48048 2.15825 2.44280 2.75443 3.16356 3.39153 3.61915 3.90253 3.99249 4.11977 4.17652 4.30128 4.32554 4.39716 4.46206 4.61479 4.69285 4.74864 4.82175 4.88879 4.98038 5.06183 5.09047 5.15287 5.28960 5.30740 5.45952 5.50263 5.59954 5.72279 6.16344 6.23706 6.40192 6.70632 6.89630 7.18914 7.55003 9.00709 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.006826 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.425664 B = 4101.036013 C = 5112.051070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.316 6.316 3 C 0.289 3.711 4 C -0.185 4.185 5 C -0.029 4.029 6 C -0.166 4.166 7 C 0.114 3.886 8 H 0.080 0.920 9 C -0.128 4.128 10 C -0.137 4.137 11 C 0.214 3.786 12 C -0.135 4.135 13 C -0.543 4.543 14 H 0.052 0.948 15 C 0.038 3.962 16 N -0.887 5.887 17 Si 0.936 3.064 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.268 1.268 21 O -0.378 6.378 22 C 0.148 3.852 23 N -0.563 5.563 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.129 0.871 27 H 0.172 0.828 28 H 0.179 0.821 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.056 0.944 36 H 0.255 0.745 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.893 -11.208 -6.139 14.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.224 6.224 3 C 0.110 3.890 4 C -0.205 4.205 5 C -0.054 4.054 6 C -0.168 4.168 7 C 0.056 3.944 8 H 0.098 0.902 9 C -0.165 4.165 10 C -0.175 4.175 11 C 0.176 3.824 12 C -0.192 4.192 13 C -0.580 4.580 14 H 0.071 0.929 15 C -0.165 4.165 16 N -0.524 5.524 17 Si 0.762 3.238 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.193 1.193 21 O -0.299 6.299 22 C -0.007 4.007 23 N -0.287 5.287 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.148 0.852 27 H 0.190 0.810 28 H 0.197 0.803 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.916 -11.603 -5.750 13.851 hybrid contribution -0.831 0.882 0.056 1.213 sum 4.085 -10.720 -5.694 12.808 Atomic orbital electron populations 1.22992 0.76450 1.04547 1.01682 1.86186 1.23857 1.24130 1.88235 1.20294 0.90598 0.84656 0.93487 1.21332 0.91147 1.00443 1.07591 1.21610 1.01891 0.89411 0.92479 1.20906 0.94545 0.96813 1.04558 1.21666 0.94540 0.86891 0.91342 0.90193 1.23111 1.02346 0.94866 0.96181 1.23136 1.00033 0.96296 0.98029 1.19740 0.93220 0.80681 0.88741 1.21892 0.97183 0.97973 1.02191 1.21545 0.96867 1.46704 0.92930 0.92937 1.25611 1.01366 0.94377 0.95109 1.70088 1.35578 1.47734 0.99042 0.85983 0.81577 0.79053 0.77170 1.20294 1.21394 1.19272 1.88742 1.73263 1.20900 1.46950 1.22084 0.93779 0.92564 0.92244 1.67275 1.41988 0.99197 1.20251 0.93605 0.93079 0.85249 0.81006 0.80335 0.88090 0.92550 0.91465 0.90659 0.95041 0.94023 0.92530 0.93554 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.91 10.38 113.37 1.18 2.09 16 2 O -0.32 -9.12 10.48 -90.03 -0.94 -10.06 16 3 C 0.29 9.40 7.49 84.79 0.63 10.04 16 4 C -0.19 -4.88 10.04 22.47 0.23 -4.65 16 5 C -0.03 -0.77 9.83 22.44 0.22 -0.55 16 6 C -0.17 -5.86 5.04 -19.77 -0.10 -5.96 16 7 C 0.11 4.24 3.66 30.51 0.11 4.36 16 8 H 0.08 2.58 8.06 -2.39 -0.02 2.56 16 9 C -0.13 -4.29 6.55 32.05 0.21 -4.08 16 10 C -0.14 -5.21 6.08 31.85 0.19 -5.01 16 11 C 0.21 10.26 0.82 -11.07 -0.01 10.25 16 12 C -0.13 -6.40 8.52 71.98 0.61 -5.79 16 13 C -0.54 -29.23 8.23 25.60 0.21 -29.02 16 14 H 0.05 2.79 7.48 -2.91 -0.02 2.77 16 15 C 0.04 2.09 5.26 84.65 0.45 2.53 16 16 N -0.89 -51.74 10.93 21.45 0.23 -51.50 16 17 Si 0.94 44.08 29.54 68.60 2.03 46.11 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 21 O -0.38 -18.64 9.19 -148.98 -1.37 -20.01 16 22 C 0.15 6.08 10.44 84.63 0.88 6.96 16 23 N -0.56 -21.69 9.22 -308.94 -2.85 -24.53 16 24 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 25 H 0.05 1.27 8.11 -2.39 -0.02 1.25 16 26 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 28 H 0.18 3.22 8.06 -2.91 -0.02 3.19 16 29 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.06 2.07 7.97 -2.39 -0.02 2.05 16 31 H 0.07 2.55 7.60 -2.39 -0.02 2.53 16 32 H 0.07 2.49 7.85 -2.38 -0.02 2.47 16 33 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.06 3.07 6.06 -2.39 -0.01 3.05 16 36 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 37 H 0.13 6.43 7.77 -2.91 -0.02 6.40 16 Total: -1.00 -66.23 309.00 2.97 -63.26 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 1.05 Total: 15.58 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 4.82 Total: -18.84 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -2.61 Total: -76.04 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -2.31 Total: -30.07 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -66.23 2.97 -63.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383769532.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.572 kcal (2) G-P(sol) polarization free energy of solvation -66.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds