Wall clock time and date at job start Mon Mar 30 2020 06:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00177 * 2 1 4 4 H 1.48503 * 109.46978 * 269.99961 * 3 2 1 5 5 H 1.48494 * 109.47008 * 29.99976 * 3 2 1 6 6 H 1.48503 * 109.47122 * 150.00203 * 3 2 1 7 7 C 1.37884 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99886 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46906 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47092 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47245 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47141 * 179.97438 * 12 11 10 14 14 C 1.35656 * 117.00084 * 180.02562 * 13 12 11 15 15 C 1.38714 * 120.14894 * 359.97411 * 14 13 12 16 16 C 1.38051 * 120.08468 * 180.02562 * 15 14 13 17 17 C 1.38555 * 120.38906 * 0.02562 * 16 15 14 18 18 C 1.37786 * 120.30047 * 359.97438 * 17 16 15 19 19 C 1.39705 * 119.90585 * 0.02562 * 18 17 16 20 20 C 1.47544 * 120.19020 * 179.97438 * 19 18 17 21 21 N 1.34783 * 119.99517 * 359.97438 * 20 19 18 22 22 O 1.21581 * 119.99935 * 179.97438 * 20 19 18 23 23 H 0.96996 * 119.99447 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46967 * 60.00400 * 9 7 2 25 25 H 1.08996 * 109.47117 * 299.99977 * 9 7 2 26 26 H 1.09003 * 109.46852 * 60.00488 * 10 9 7 27 27 H 1.08996 * 109.47343 * 299.99997 * 10 9 7 28 28 H 1.08999 * 109.47100 * 59.99662 * 11 10 9 29 29 H 1.09010 * 109.46698 * 300.00325 * 11 10 9 30 30 H 1.09003 * 109.47097 * 60.00090 * 12 11 10 31 31 H 1.09001 * 109.47366 * 299.99889 * 12 11 10 32 32 H 1.07996 * 119.95854 * 0.02699 * 15 14 13 33 33 H 1.07997 * 119.80544 * 180.27727 * 16 15 14 34 34 H 1.07998 * 119.84739 * 179.97438 * 17 16 15 35 35 H 1.07996 * 120.04310 * 180.02562 * 18 17 16 36 36 H 0.96998 * 120.00167 * 0.02562 * 21 20 19 37 37 H 0.97000 * 119.99219 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4802 -4.9872 0.0020 12 6 2.4743 -6.1501 0.0024 13 8 1.7598 -7.3876 0.0035 14 6 2.4986 -8.5253 0.0045 15 6 3.8840 -8.4564 0.0039 16 6 4.6345 -9.6151 0.0044 17 6 4.0125 -10.8531 0.0050 18 6 2.6374 -10.9402 0.0056 19 6 1.8657 -9.7756 0.0051 20 6 0.3928 -9.8615 0.0052 21 7 -0.2119 -11.0661 0.0052 22 8 -0.2754 -8.8458 0.0052 23 1 -0.4849 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 2.8725 -3.6040 0.8910 27 1 2.8712 -3.6048 -0.8890 28 1 0.8531 -5.0450 -0.8877 29 1 0.8538 -5.0447 0.8923 30 1 3.1010 -6.0920 0.8923 31 1 3.1010 -6.0927 -0.8877 32 1 4.3762 -7.4951 0.0031 33 1 5.7129 -9.5561 0.0085 34 1 4.6082 -11.7540 0.0050 35 1 2.1568 -11.9073 0.0065 36 1 0.3212 -11.8764 0.0055 37 1 -1.1803 -11.1225 0.0049 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385294720.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:34 Heat of formation + Delta-G solvation = -72.058672 kcal Electronic energy + Delta-G solvation = -18710.849353 eV Core-core repulsion = 15645.643932 eV Total energy + Delta-G solvation = -3065.205421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.62437 -38.80592 -37.51332 -34.72762 -33.83117 -32.43617 -31.22246 -30.24908 -28.64881 -25.16253 -24.28756 -22.76626 -21.44954 -20.74297 -20.01313 -18.65955 -17.33264 -16.92256 -16.22121 -16.13406 -15.64112 -15.16708 -14.83660 -14.73959 -14.44082 -13.89743 -13.62124 -13.42828 -12.63157 -12.54120 -12.07270 -11.90433 -11.60943 -11.56070 -11.18878 -10.90958 -10.53860 -10.42700 -10.42207 -9.94437 -9.77774 -9.65635 -9.32072 -9.31879 -9.03382 -8.36855 -8.31142 -5.95969 -3.98682 0.65058 1.18872 2.80698 3.20299 3.34189 3.38379 3.40223 3.43505 3.68266 4.46691 4.49153 4.54743 4.74777 4.95462 5.07839 5.22596 5.25041 5.27381 5.39502 5.52464 5.62675 5.89155 6.01600 6.05944 6.11907 6.16882 6.45361 6.48631 6.67188 6.76752 6.92573 7.11588 7.19147 7.45761 7.72281 7.86970 8.04577 8.23944 8.45935 9.08598 9.65018 11.15405 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033706 B = 0.003207 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.521246 B = 8728.310213 C = 9527.780103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.106 4.106 11 C -0.115 4.115 12 C 0.053 3.947 13 O -0.278 6.278 14 C 0.196 3.804 15 C -0.222 4.222 16 C -0.050 4.050 17 C -0.177 4.177 18 C -0.049 4.049 19 C -0.186 4.186 20 C 0.561 3.439 21 N -0.859 5.859 22 O -0.513 6.513 23 H 0.260 0.740 24 H 0.017 0.983 25 H 0.018 0.982 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.396 0.604 37 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.408 -26.402 0.016 27.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.153 4.153 12 C -0.022 4.022 13 O -0.188 6.188 14 C 0.147 3.853 15 C -0.241 4.241 16 C -0.068 4.068 17 C -0.195 4.195 18 C -0.068 4.068 19 C -0.190 4.190 20 C 0.346 3.654 21 N -0.425 5.425 22 O -0.387 6.387 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.225 0.775 37 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 6.753 -25.439 0.022 26.320 hybrid contribution 0.617 0.498 -0.010 0.794 sum 7.370 -24.940 0.012 26.006 Atomic orbital electron populations 1.69974 1.06055 1.26570 1.50793 1.25042 0.94851 0.99259 0.95394 0.86594 0.79815 0.83519 0.78063 1.20686 1.21228 1.19905 1.21259 0.92994 0.91111 1.50611 0.92711 1.19091 0.93977 0.91046 0.97501 1.21585 0.99234 0.93170 1.00383 1.21674 0.97933 0.92127 1.03572 1.23220 0.96240 0.81730 1.01000 1.86393 1.34821 1.12231 1.85389 1.19156 0.89806 0.86690 0.89677 1.21394 0.92464 1.00496 1.09696 1.21156 1.00070 0.91816 0.93798 1.20932 0.94284 0.97918 1.06345 1.21081 0.93993 0.96387 0.95305 1.19284 0.93230 0.91673 1.14798 1.18042 0.87530 0.83567 0.76221 1.43750 1.11171 1.08013 1.79535 1.90931 1.65708 1.34486 1.47620 0.92997 0.96425 0.96410 0.93200 0.93206 0.91167 0.91175 0.92031 0.92025 0.84439 0.85324 0.85433 0.85284 0.77506 0.76605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 11 C -0.12 -2.15 5.58 -26.73 -0.15 -2.30 16 12 C 0.05 0.81 4.74 37.15 0.18 0.99 16 13 O -0.28 -4.72 8.21 -40.55 -0.33 -5.05 16 14 C 0.20 2.76 6.70 -38.70 -0.26 2.50 16 15 C -0.22 -2.49 9.03 -39.47 -0.36 -2.84 16 16 C -0.05 -0.43 10.03 -39.53 -0.40 -0.83 16 17 C -0.18 -1.35 10.02 -39.63 -0.40 -1.74 16 18 C -0.05 -0.40 9.53 -39.20 -0.37 -0.78 16 19 C -0.19 -2.29 5.89 -104.85 -0.62 -2.90 16 20 C 0.56 7.52 8.04 -12.46 -0.10 7.42 16 21 N -0.86 -6.88 8.82 30.46 0.27 -6.62 16 22 O -0.51 -9.53 16.00 -16.58 -0.27 -9.80 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 30 H 0.06 0.85 7.66 -51.93 -0.40 0.46 16 31 H 0.06 0.85 7.66 -51.93 -0.40 0.46 16 32 H 0.14 1.40 6.30 -52.49 -0.33 1.07 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.58 6.40 -52.49 -0.34 0.25 16 36 H 0.40 1.76 6.86 -40.82 -0.28 1.48 16 37 H 0.40 2.80 8.93 -40.82 -0.36 2.43 16 LS Contribution 316.27 15.07 4.77 4.77 Total: -1.00 -35.84 316.27 -8.04 -43.88 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.03 Total: -0.99 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -3.16 Total: -16.31 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 1.01 Total: -33.49 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.60 Total: -14.85 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.84 -8.04 -43.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385294720.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.177 kcal (2) G-P(sol) polarization free energy of solvation -35.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds